Wall clock time and date at job start Mon Mar 30 2020 00:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47350 * 2 1 4 4 C 1.38588 * 110.99791 * 75.21718 * 3 2 1 5 5 N 1.31214 * 126.47053 * 60.57708 * 4 3 2 6 6 N 1.28531 * 109.85704 * 179.97438 * 5 4 3 7 7 C 1.30299 * 110.05296 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.34562 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47073 * 90.03192 * 8 7 6 10 10 C 1.50697 * 109.47346 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99802 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00083 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00016 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99918 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47074 * 90.00140 * 14 12 10 16 16 H 1.48496 * 109.46792 * 209.99663 * 14 12 10 17 17 H 1.48499 * 109.47125 * 329.99741 * 14 12 10 18 18 N 1.36455 * 126.47074 * 240.86084 * 4 3 2 19 19 C 1.46497 * 127.13810 * 0.02562 * 18 4 3 20 20 C 1.46895 * 111.00011 * 199.17168 * 3 2 1 21 21 C 1.52999 * 109.46945 * 65.61029 * 20 3 2 22 22 C 1.52998 * 109.46872 * 185.61151 * 20 3 2 23 23 H 1.09000 * 109.47295 * 181.15464 * 1 2 3 24 24 H 1.09003 * 109.47235 * 301.15237 * 1 2 3 25 25 H 1.09003 * 109.47059 * 61.14878 * 1 2 3 26 26 H 1.08997 * 109.46832 * 239.99724 * 2 1 3 27 27 H 1.09002 * 109.46713 * 119.99698 * 2 1 3 28 28 H 1.09001 * 109.47223 * 330.02518 * 8 7 6 29 29 H 1.09006 * 109.47248 * 210.02686 * 8 7 6 30 30 H 1.08993 * 109.47160 * 59.99174 * 9 8 7 31 31 H 1.09006 * 109.46670 * 299.99848 * 9 8 7 32 32 H 0.96998 * 119.99894 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.47082 * 273.40978 * 19 18 4 34 34 H 1.09006 * 109.47374 * 33.40616 * 19 18 4 35 35 H 1.08996 * 109.47091 * 153.40660 * 19 18 4 36 36 H 1.09001 * 109.47055 * 305.60926 * 20 3 2 37 37 H 1.08997 * 109.47178 * 54.21286 * 21 20 3 38 38 H 1.09005 * 109.46992 * 174.20539 * 21 20 3 39 39 H 1.08991 * 109.47405 * 294.20803 * 21 20 3 40 40 H 1.09007 * 109.46824 * 180.02562 * 22 20 3 41 41 H 1.08994 * 109.47426 * 299.99542 * 22 20 3 42 42 H 1.08997 * 109.47443 * 60.00019 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8741 1.9632 1.2510 5 7 2.4239 1.5520 2.3692 6 7 2.0748 2.3228 3.3367 7 6 1.2885 3.2640 2.8966 8 6 0.6655 4.3637 3.7174 9 6 1.6003 5.5748 3.7406 10 6 0.9777 6.6743 4.5619 11 1 0.0116 6.5244 5.0210 12 6 1.6413 7.8714 4.7272 13 7 2.8179 8.0537 4.1686 14 14 0.8691 9.2346 5.7446 15 1 1.2876 9.0919 7.1622 16 1 1.3162 10.5526 5.2268 17 1 -0.6103 9.1429 5.6536 18 7 1.1274 3.0646 1.5535 19 6 0.3234 3.8690 0.6301 20 6 3.4165 1.4495 -0.4504 21 6 3.4993 1.0242 -1.9177 22 6 3.9336 2.8820 -0.3045 23 1 -0.3634 -1.0274 0.0207 24 1 -0.3634 0.5316 0.8795 25 1 -0.3633 0.4959 -0.9001 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5036 4.0100 4.7356 29 1 -0.2892 4.6501 3.2761 30 1 1.7622 5.9284 2.7225 31 1 2.5550 5.2883 4.1819 32 1 3.2845 8.8961 4.2846 33 1 0.9519 4.6324 0.1715 34 1 -0.0913 3.2255 -0.1459 35 1 -0.4885 4.3475 1.1775 36 1 4.0253 0.7798 0.1570 37 1 2.8118 1.6278 -2.5103 38 1 4.5165 1.1698 -2.2813 39 1 3.2287 -0.0278 -2.0070 40 1 4.9700 2.9299 -0.6391 41 1 3.3249 3.5517 -0.9118 42 1 3.8746 3.1850 0.7408 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121494375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:49 Heat of formation + Delta-G solvation = 51.753779 kcal Electronic energy + Delta-G solvation = -21059.733980 eV Core-core repulsion = 18075.285925 eV Total energy + Delta-G solvation = -2984.448054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.02144 -39.52101 -36.35566 -35.59933 -34.18725 -33.62401 -31.39394 -29.42937 -28.39528 -28.12930 -27.06371 -24.07587 -23.70230 -22.76173 -21.53556 -20.73418 -18.63899 -18.26212 -17.77011 -16.96248 -16.57770 -16.27285 -15.74703 -15.34727 -15.01008 -14.85964 -14.39233 -14.21346 -13.94551 -13.69186 -13.51024 -13.19032 -13.14933 -12.98854 -12.86578 -12.68111 -12.66486 -12.45686 -12.30911 -12.13465 -12.04158 -11.81327 -11.69991 -11.54041 -11.30814 -11.03219 -10.57780 -9.94901 -9.84984 -8.20570 -6.33192 0.75180 1.31264 1.43415 1.45119 1.55761 1.77840 2.42070 2.66465 3.13915 3.47677 3.70742 3.83151 3.90047 4.05515 4.09894 4.24967 4.27099 4.33492 4.38842 4.51541 4.60439 4.62385 4.67624 4.71880 4.73943 4.81479 4.87887 4.91480 5.00615 5.02393 5.11981 5.12949 5.25419 5.35949 5.43508 5.58252 5.61090 5.76972 5.77872 6.15347 6.27077 6.82776 7.37140 7.71952 8.91658 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004433 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.332154 B = 6314.449646 C = 6662.315644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.453 5.453 4 C 0.354 3.646 5 N -0.354 5.354 6 N -0.336 5.336 7 C 0.196 3.804 8 C -0.015 4.015 9 C 0.045 3.955 10 C -0.539 4.539 11 H 0.073 0.927 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.255 1.255 18 N -0.465 5.465 19 C 0.076 3.924 20 C 0.087 3.913 21 C -0.132 4.132 22 C -0.144 4.144 23 H 0.081 0.919 24 H 0.022 0.978 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.098 0.902 30 H -0.006 1.006 31 H -0.020 1.020 32 H 0.263 0.737 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -13.444 -15.633 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.180 5.180 4 C -0.003 4.003 5 N -0.198 5.198 6 N -0.176 5.176 7 C -0.073 4.073 8 C -0.055 4.055 9 C 0.006 3.994 10 C -0.577 4.577 11 H 0.091 0.909 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.179 1.179 18 N -0.156 5.156 19 C -0.065 4.065 20 C -0.020 4.020 21 C -0.189 4.189 22 C -0.202 4.202 23 H 0.100 0.900 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.138 0.862 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.012 0.988 31 H -0.002 1.002 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.723 -13.897 -15.077 21.041 hybrid contribution -0.004 1.325 0.577 1.445 sum -4.727 -12.572 -14.500 19.764 Atomic orbital electron populations 1.21728 0.93678 1.02743 1.01574 1.22396 0.97063 0.85106 1.02835 1.59185 1.22647 1.20283 1.15934 1.22424 0.95338 0.89761 0.92790 1.74357 1.23849 1.24505 0.97063 1.73917 1.14568 1.04972 1.24140 1.25355 0.99903 0.99491 0.82511 1.20151 0.98545 0.89160 0.97614 1.18812 0.93548 0.91488 0.95510 1.21597 1.05272 0.98927 1.31927 0.90870 1.25994 0.95211 1.01503 0.96926 1.70128 1.15479 1.26146 1.45766 0.85395 0.79375 0.77564 0.78400 1.20209 1.20988 1.17909 1.46373 1.37301 1.23219 1.08750 1.22278 0.95385 0.95727 0.93119 1.21796 0.84717 0.96890 0.98642 1.21838 1.03486 1.02306 0.91290 1.21864 1.02514 0.96325 0.99506 0.89972 0.95894 0.90346 0.86216 0.94988 0.89450 0.88385 0.98752 1.00182 0.92812 0.90361 0.86577 0.88052 0.93952 0.90884 0.90242 0.90690 0.89807 0.91366 0.97220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.02 71.98 0.72 -1.77 16 2 C 0.05 1.06 5.55 86.30 0.48 1.54 16 3 N -0.45 -11.25 4.36 -682.09 -2.97 -14.22 16 4 C 0.35 11.96 3.91 260.11 1.02 12.98 16 5 N -0.35 -14.79 11.92 -58.00 -0.69 -15.48 16 6 N -0.34 -15.49 12.18 -49.54 -0.60 -16.09 16 7 C 0.20 8.14 7.32 137.64 1.01 9.14 16 8 C -0.02 -0.63 5.52 29.85 0.16 -0.46 16 9 C 0.04 2.37 4.95 29.85 0.15 2.52 16 10 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 11 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 14 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 N -0.46 -15.83 3.21 -538.18 -1.73 -17.56 16 19 C 0.08 1.88 11.08 127.77 1.42 3.29 16 20 C 0.09 1.98 2.64 44.92 0.12 2.10 16 21 C -0.13 -1.83 9.02 71.98 0.65 -1.18 16 22 C -0.14 -3.86 8.88 71.98 0.64 -3.22 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.02 0.53 7.67 -2.39 -0.02 0.51 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.12 1.64 5.96 -2.39 -0.01 1.63 16 27 H 0.03 0.81 7.74 -2.39 -0.02 0.79 16 28 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.10 3.48 7.20 -2.38 -0.02 3.46 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.10 2.27 7.15 -2.39 -0.02 2.25 16 36 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 0.80 6.48 -2.39 -0.02 0.79 16 40 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.01 0.32 7.00 -2.39 -0.02 0.30 16 Total: -1.00 -73.69 342.21 4.35 -69.34 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.98 Total: 9.41 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 7.05 Total: -4.03 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.71 Total: -120.09 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.69 4.35 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.093 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds