Wall clock time and date at job start Mon Mar 30 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.52999 * 109.47303 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46762 * 184.82464 * 4 3 2 6 6 C 1.36930 * 119.99707 * 95.54413 * 5 4 3 7 7 H 1.08003 * 120.00331 * 230.62082 * 6 5 4 8 8 C 1.38813 * 120.00059 * 50.62065 * 6 5 4 9 9 N 1.31620 * 119.99990 * 201.90259 * 8 6 5 10 10 Si 1.86801 * 120.00056 * 21.90739 * 8 6 5 11 11 H 1.48502 * 109.46942 * 174.20298 * 10 8 6 12 12 H 1.48496 * 109.47074 * 294.20016 * 10 8 6 13 13 H 1.48494 * 109.47220 * 54.20267 * 10 8 6 14 14 C 1.46496 * 119.99979 * 275.53796 * 5 4 3 15 15 H 1.08997 * 109.43029 * 359.89758 * 14 5 4 16 16 C 1.53135 * 109.42832 * 240.00100 * 14 5 4 17 17 C 1.53715 * 108.88701 * 185.90824 * 16 14 5 18 18 H 1.09004 * 112.12775 * 188.36848 * 17 16 14 19 19 C 1.54606 * 107.81043 * 312.38202 * 17 16 14 20 20 C 1.54283 * 104.84069 * 88.56092 * 19 17 16 21 21 C 1.54604 * 104.84542 * 359.97438 * 20 19 17 22 22 H 1.08997 * 112.21926 * 146.86445 * 21 20 19 23 23 C 1.53141 * 109.42723 * 119.73944 * 14 5 4 24 24 N 1.48714 * 107.23965 * 64.09421 * 17 16 14 25 25 C 1.46894 * 111.00107 * 168.34424 * 24 17 16 26 26 H 1.08992 * 109.47325 * 300.00076 * 1 2 3 27 27 H 1.09001 * 109.46793 * 60.00436 * 1 2 3 28 28 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47551 * 239.99382 * 2 1 3 30 30 H 1.09005 * 109.47251 * 119.99688 * 2 1 3 31 31 H 1.09001 * 109.47294 * 59.99225 * 3 2 1 32 32 H 1.09005 * 109.46685 * 300.00034 * 3 2 1 33 33 H 1.09006 * 109.47122 * 64.83212 * 4 3 2 34 34 H 1.08997 * 109.47490 * 304.82315 * 4 3 2 35 35 H 0.96999 * 120.00362 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.57158 * 305.73171 * 16 14 5 37 37 H 1.09004 * 109.56638 * 65.97109 * 16 14 5 38 38 H 1.08996 * 110.36498 * 207.40242 * 19 17 16 39 39 H 1.08997 * 110.36574 * 329.71863 * 19 17 16 40 40 H 1.09004 * 110.36617 * 118.84290 * 20 19 17 41 41 H 1.09006 * 110.36485 * 241.15270 * 20 19 17 42 42 H 1.08998 * 109.56744 * 293.92057 * 23 14 5 43 43 H 1.09006 * 109.56440 * 54.27495 * 23 14 5 44 44 H 1.08996 * 109.47375 * 60.00080 * 25 24 17 45 45 H 1.09000 * 109.47343 * 179.97438 * 25 24 17 46 46 H 1.08997 * 109.47183 * 299.99560 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8189 0.1168 6 6 4.3939 3.3249 1.3441 7 1 3.9922 4.2747 1.6649 8 6 5.2506 2.6171 2.1760 9 7 5.2461 2.8447 3.4724 10 14 6.4098 1.3416 1.4557 11 1 7.3094 0.8322 2.5218 12 1 5.6203 0.2160 0.8947 13 1 7.2212 1.9626 0.3782 14 6 4.1875 3.6537 -1.0800 15 1 3.8780 3.0828 -1.9554 16 6 5.6472 4.0864 -1.2441 17 6 5.7434 5.0792 -2.4137 18 1 6.7769 5.3104 -2.6721 19 6 4.9623 4.4817 -3.6066 20 6 3.5132 4.9766 -3.4178 21 6 3.5503 5.8276 -2.1276 22 1 2.8481 6.6606 -2.1629 23 6 3.2947 4.8898 -0.9376 24 7 4.9622 6.2860 -2.0330 25 6 5.2198 7.3945 -2.9618 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 1.0052 -0.9293 34 1 3.9331 0.8557 0.8445 35 1 4.6440 3.5068 3.8465 36 1 5.9907 4.5671 -0.3281 37 1 6.2656 3.2133 -1.4523 38 1 5.3689 4.8493 -4.5487 39 1 4.9981 3.3927 -3.5763 40 1 3.2073 5.5876 -4.2670 41 1 2.8365 4.1309 -3.2947 42 1 2.2481 4.5854 -0.9308 43 1 3.5325 5.4066 -0.0078 44 1 4.9339 7.0971 -3.9706 45 1 4.6357 8.2641 -2.6605 46 1 6.2805 7.6448 -2.9436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169146098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:45 Heat of formation + Delta-G solvation = 10.200049 kcal Electronic energy + Delta-G solvation = -22300.203932 eV Core-core repulsion = 19417.494316 eV Total energy + Delta-G solvation = -2882.709616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39883 -36.43343 -34.13581 -32.29714 -31.15365 -30.80139 -29.98498 -27.60716 -25.61262 -23.71084 -23.62801 -22.40047 -20.60132 -20.21189 -19.99683 -18.23058 -16.94317 -15.94756 -15.65618 -14.93853 -14.19640 -14.00966 -13.94438 -13.58362 -13.35809 -13.21957 -12.60424 -12.51471 -12.38468 -12.14151 -12.09601 -11.99466 -11.74870 -11.55376 -11.27328 -10.93323 -10.77777 -10.59471 -10.56389 -10.27633 -10.21548 -10.05277 -9.92608 -9.73747 -9.56600 -9.43049 -8.93902 -8.26489 -8.15759 -6.78690 -6.00237 -3.46655 3.49046 3.57381 3.76095 4.24430 4.67234 4.93729 4.94154 5.10263 5.15853 5.40298 5.43463 5.46803 5.51103 5.57595 5.59289 5.61171 5.69615 5.71667 5.84690 5.96507 5.97663 6.01709 6.05277 6.10913 6.18258 6.22862 6.27200 6.32153 6.36986 6.44211 6.46787 6.52959 6.63979 6.65695 6.78344 6.80197 7.04830 7.13894 7.20985 7.26555 7.29913 7.51078 8.38152 8.74554 9.18999 9.70319 10.39867 11.15709 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.008116 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.823824 B = 3449.349355 C = 4526.762814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.133 4.133 4 C 0.138 3.862 5 N -0.599 5.599 6 C -0.343 4.343 7 H 0.053 0.947 8 C 0.007 3.993 9 N -0.913 5.913 10 Si 1.048 2.952 11 H -0.299 1.299 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.177 3.823 15 H 0.046 0.954 16 C -0.114 4.114 17 C 0.064 3.936 18 H 0.083 0.917 19 C -0.148 4.148 20 C -0.148 4.148 21 C 0.065 3.935 22 H 0.081 0.919 23 C -0.110 4.110 24 N -0.502 5.502 25 C 0.014 3.986 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.265 0.735 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.062 0.938 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 1.496 -13.895 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.013 3.987 5 N -0.320 5.320 6 C -0.472 4.472 7 H 0.070 0.930 8 C -0.197 4.197 9 N -0.549 5.549 10 Si 0.878 3.122 11 H -0.226 1.226 12 H -0.213 1.213 13 H -0.213 1.213 14 C 0.070 3.930 15 H 0.064 0.936 16 C -0.153 4.153 17 C -0.046 4.046 18 H 0.101 0.899 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.045 4.045 22 H 0.099 0.901 23 C -0.149 4.149 24 N -0.225 5.225 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.521 0.621 -12.916 13.174 hybrid contribution -1.424 0.940 -1.356 2.180 sum -3.945 1.561 -14.272 14.889 Atomic orbital electron populations 1.21755 0.96765 1.00583 1.01422 1.21524 0.95008 0.98458 1.01308 1.22176 0.99337 0.94523 1.01227 1.21345 0.91278 0.87327 0.98762 1.44195 1.74810 1.09828 1.03199 1.19798 1.26602 1.08180 0.92657 0.92991 1.26508 0.97110 1.01232 0.94827 1.70916 1.40298 1.32772 1.10963 0.84052 0.77054 0.76195 0.74860 1.22625 1.21271 1.21284 1.20512 0.92154 0.90972 0.89314 0.93569 1.22132 0.99075 0.96575 0.97563 1.23121 0.96535 0.90470 0.94429 0.89899 1.22930 0.95520 1.01616 0.98679 1.22914 0.97197 1.00244 0.98311 1.23093 0.90128 0.96272 0.94968 0.90060 1.22045 0.98953 0.96638 0.97289 1.65458 1.04876 1.05510 1.46610 1.22440 1.01503 0.95064 0.94475 0.92938 0.93307 0.93561 0.92877 0.92270 0.91921 0.93687 0.95497 0.91974 0.92530 0.89867 0.92875 0.92718 0.90902 0.92746 0.90938 0.93012 0.90576 0.95815 0.91946 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.46 5.53 -26.73 -0.15 -2.61 16 4 C 0.14 2.94 4.19 -4.04 -0.02 2.93 16 5 N -0.60 -13.76 1.73 -165.50 -0.29 -14.05 16 6 C -0.34 -9.28 8.14 -15.06 -0.12 -9.41 16 7 H 0.05 1.56 7.13 -52.48 -0.37 1.19 16 8 C 0.01 0.21 5.18 -17.43 -0.09 0.12 16 9 N -0.91 -27.94 13.71 55.49 0.76 -27.18 16 10 Si 1.05 25.95 26.90 -169.99 -4.57 21.37 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.29 -6.57 5.84 56.52 0.33 -6.24 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.18 3.49 2.27 -67.79 -0.15 3.34 16 15 H 0.05 0.86 5.23 -51.93 -0.27 0.59 16 16 C -0.11 -2.24 4.96 -26.29 -0.13 -2.37 16 17 C 0.06 1.02 3.67 -65.49 -0.24 0.78 16 18 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 19 C -0.15 -2.05 5.33 -25.22 -0.13 -2.19 16 20 C -0.15 -2.01 5.29 -25.22 -0.13 -2.15 16 21 C 0.06 1.00 3.68 -65.51 -0.24 0.76 16 22 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 23 C -0.11 -2.06 4.96 -26.32 -0.13 -2.19 16 24 N -0.50 -8.07 5.29 -221.12 -1.17 -9.24 16 25 C 0.01 0.18 9.46 60.06 0.57 0.75 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 34 H 0.06 1.46 4.91 -51.93 -0.25 1.20 16 35 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 36 H 0.08 1.92 7.48 -51.93 -0.39 1.54 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 1.03 7.03 -51.93 -0.37 0.66 16 40 H 0.05 0.66 8.01 -51.93 -0.42 0.24 16 41 H 0.07 1.01 7.03 -51.93 -0.37 0.64 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.68 6.91 -51.93 -0.36 1.32 16 44 H 0.02 0.28 6.88 -51.93 -0.36 -0.08 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -28.70 337.46 -9.65 -38.35 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.71 Total: 1.61 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.76 Total: -15.96 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.70 Total: -50.47 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -4.57 Total: 21.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.70 -9.65 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169146098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.552 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds