Wall clock time and date at job start Mon Mar 30 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.52999 * 109.47303 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46762 * 184.82464 * 4 3 2 6 6 C 1.36930 * 119.99707 * 95.54413 * 5 4 3 7 7 H 1.08003 * 120.00331 * 230.62082 * 6 5 4 8 8 C 1.38813 * 120.00059 * 50.62065 * 6 5 4 9 9 N 1.31620 * 119.99990 * 201.90259 * 8 6 5 10 10 Si 1.86801 * 120.00056 * 21.90739 * 8 6 5 11 11 H 1.48502 * 109.46942 * 174.20298 * 10 8 6 12 12 H 1.48496 * 109.47074 * 294.20016 * 10 8 6 13 13 H 1.48494 * 109.47220 * 54.20267 * 10 8 6 14 14 C 1.46496 * 119.99979 * 275.53796 * 5 4 3 15 15 H 1.08997 * 109.43029 * 359.89758 * 14 5 4 16 16 C 1.53135 * 109.42832 * 240.00100 * 14 5 4 17 17 C 1.53715 * 108.88701 * 185.90824 * 16 14 5 18 18 H 1.09004 * 112.12775 * 188.36848 * 17 16 14 19 19 C 1.54606 * 107.81043 * 312.38202 * 17 16 14 20 20 C 1.54283 * 104.84069 * 88.56092 * 19 17 16 21 21 C 1.54604 * 104.84542 * 359.97438 * 20 19 17 22 22 H 1.08997 * 112.21926 * 146.86445 * 21 20 19 23 23 C 1.53141 * 109.42723 * 119.73944 * 14 5 4 24 24 N 1.48714 * 107.23965 * 64.09421 * 17 16 14 25 25 C 1.46894 * 111.00107 * 168.34424 * 24 17 16 26 26 H 1.08992 * 109.47325 * 300.00076 * 1 2 3 27 27 H 1.09001 * 109.46793 * 60.00436 * 1 2 3 28 28 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47551 * 239.99382 * 2 1 3 30 30 H 1.09005 * 109.47251 * 119.99688 * 2 1 3 31 31 H 1.09001 * 109.47294 * 59.99225 * 3 2 1 32 32 H 1.09005 * 109.46685 * 300.00034 * 3 2 1 33 33 H 1.09006 * 109.47122 * 64.83212 * 4 3 2 34 34 H 1.08997 * 109.47490 * 304.82315 * 4 3 2 35 35 H 0.96999 * 120.00362 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.57158 * 305.73171 * 16 14 5 37 37 H 1.09004 * 109.56638 * 65.97109 * 16 14 5 38 38 H 1.08996 * 110.36498 * 207.40242 * 19 17 16 39 39 H 1.08997 * 110.36574 * 329.71863 * 19 17 16 40 40 H 1.09004 * 110.36617 * 118.84290 * 20 19 17 41 41 H 1.09006 * 110.36485 * 241.15270 * 20 19 17 42 42 H 1.08998 * 109.56744 * 293.92057 * 23 14 5 43 43 H 1.09006 * 109.56440 * 54.27495 * 23 14 5 44 44 H 1.08996 * 109.47375 * 60.00080 * 25 24 17 45 45 H 1.09000 * 109.47343 * 179.97438 * 25 24 17 46 46 H 1.08997 * 109.47183 * 299.99560 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8189 0.1168 6 6 4.3939 3.3249 1.3441 7 1 3.9922 4.2747 1.6649 8 6 5.2506 2.6171 2.1760 9 7 5.2461 2.8447 3.4724 10 14 6.4098 1.3416 1.4557 11 1 7.3094 0.8322 2.5218 12 1 5.6203 0.2160 0.8947 13 1 7.2212 1.9626 0.3782 14 6 4.1875 3.6537 -1.0800 15 1 3.8780 3.0828 -1.9554 16 6 5.6472 4.0864 -1.2441 17 6 5.7434 5.0792 -2.4137 18 1 6.7769 5.3104 -2.6721 19 6 4.9623 4.4817 -3.6066 20 6 3.5132 4.9766 -3.4178 21 6 3.5503 5.8276 -2.1276 22 1 2.8481 6.6606 -2.1629 23 6 3.2947 4.8898 -0.9376 24 7 4.9622 6.2860 -2.0330 25 6 5.2198 7.3945 -2.9618 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 1.0052 -0.9293 34 1 3.9331 0.8557 0.8445 35 1 4.6440 3.5068 3.8465 36 1 5.9907 4.5671 -0.3281 37 1 6.2656 3.2133 -1.4523 38 1 5.3689 4.8493 -4.5487 39 1 4.9981 3.3927 -3.5763 40 1 3.2073 5.5876 -4.2670 41 1 2.8365 4.1309 -3.2947 42 1 2.2481 4.5854 -0.9308 43 1 3.5325 5.4066 -0.0078 44 1 4.9339 7.0971 -3.9706 45 1 4.6357 8.2641 -2.6605 46 1 6.2805 7.6448 -2.9436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169146098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:45 Heat of formation + Delta-G solvation = -6.927397 kcal Electronic energy + Delta-G solvation = -22300.946634 eV Core-core repulsion = 19417.494316 eV Total energy + Delta-G solvation = -2883.452318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70544 -38.12522 -35.57308 -34.16362 -32.69733 -32.15519 -31.30043 -29.15215 -26.97296 -25.42251 -25.02919 -23.85504 -21.99536 -21.87057 -21.22309 -19.89336 -18.78738 -17.39850 -17.01759 -16.37087 -15.88536 -15.56998 -15.27172 -15.06503 -14.91199 -14.70384 -14.15692 -13.93063 -13.68636 -13.52835 -13.43816 -13.38160 -13.23968 -12.80041 -12.60602 -12.41951 -12.13678 -12.10184 -11.93281 -11.76767 -11.72298 -11.62199 -11.43619 -11.27392 -11.18286 -11.11967 -10.80583 -10.39253 -9.32149 -8.92608 -8.12069 -5.68871 1.46917 1.56189 1.76242 2.59593 3.05896 3.14418 3.41714 3.80465 3.91394 3.97118 4.12943 4.20499 4.29243 4.37136 4.39194 4.43593 4.49563 4.50019 4.52839 4.54880 4.62969 4.77994 4.83824 4.90896 4.91451 4.95483 5.01859 5.02488 5.03418 5.09019 5.16167 5.18701 5.26446 5.29111 5.37696 5.38561 5.50058 5.55024 5.59463 5.67669 6.00939 6.03729 6.31677 6.51730 7.10970 7.70215 8.26654 8.87662 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.008116 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.823824 B = 3449.349355 C = 4526.762814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.132 3.868 5 N -0.610 5.610 6 C -0.315 4.315 7 H 0.005 0.995 8 C -0.046 4.046 9 N -0.952 5.952 10 Si 1.086 2.914 11 H -0.311 1.311 12 H -0.253 1.253 13 H -0.272 1.272 14 C 0.177 3.823 15 H 0.073 0.927 16 C -0.111 4.111 17 C 0.067 3.933 18 H 0.095 0.905 19 C -0.141 4.141 20 C -0.140 4.140 21 C 0.068 3.932 22 H 0.094 0.906 23 C -0.103 4.103 24 N -0.533 5.533 25 C 0.018 3.982 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.247 0.753 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.027 0.973 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 0.525 -18.203 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.161 4.161 4 C 0.007 3.993 5 N -0.332 5.332 6 C -0.446 4.446 7 H 0.023 0.977 8 C -0.242 4.242 9 N -0.592 5.592 10 Si 0.912 3.088 11 H -0.239 1.239 12 H -0.178 1.178 13 H -0.198 1.198 14 C 0.072 3.928 15 H 0.091 0.909 16 C -0.150 4.150 17 C -0.042 4.042 18 H 0.113 0.887 19 C -0.180 4.180 20 C -0.179 4.179 21 C -0.041 4.041 22 H 0.112 0.888 23 C -0.142 4.142 24 N -0.256 5.256 25 C -0.131 4.131 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.051 -0.342 -17.271 17.541 hybrid contribution -1.333 1.357 -0.007 1.902 sum -4.384 1.015 -17.277 17.854 Atomic orbital electron populations 1.21718 0.94921 1.02028 1.01493 1.21496 0.96648 0.95995 1.01823 1.22003 0.97312 0.96674 1.00151 1.21439 0.93052 0.85775 0.99008 1.44323 1.75196 1.10897 1.02832 1.19443 1.24818 1.06061 0.94236 0.97710 1.27620 0.98597 1.03578 0.94443 1.71036 1.41602 1.34106 1.12433 0.83549 0.75546 0.75330 0.74409 1.23889 1.17840 1.19760 1.20655 0.92679 0.90994 0.88497 0.90947 1.22028 0.98421 0.97250 0.97315 1.23039 0.97819 0.89747 0.93636 0.88698 1.22884 0.95101 1.01548 0.98478 1.22865 0.97197 1.00165 0.97650 1.23013 0.90401 0.96317 0.94345 0.88783 1.21902 0.98541 0.96784 0.96997 1.65345 1.05023 1.06489 1.48774 1.22453 1.02124 0.93909 0.94576 0.93982 0.92187 0.91444 0.90769 0.93335 0.95374 0.92337 0.92709 0.94367 0.94384 0.94704 0.93132 0.90064 0.90861 0.90103 0.90890 0.93111 0.95417 0.93955 0.91386 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.52 5.93 30.59 0.18 -3.34 16 3 C -0.12 -4.39 5.53 30.59 0.17 -4.22 16 4 C 0.13 5.46 4.19 86.38 0.36 5.82 16 5 N -0.61 -28.39 1.73 -677.52 -1.17 -29.57 16 6 C -0.31 -18.01 8.14 84.03 0.68 -17.33 16 7 H 0.01 0.35 7.13 -2.91 -0.02 0.33 16 8 C -0.05 -2.71 5.18 84.86 0.44 -2.27 16 9 N -0.95 -61.68 13.71 21.65 0.30 -61.39 16 10 Si 1.09 53.24 26.90 68.60 1.85 55.09 16 11 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 12 H -0.25 -11.01 5.84 99.48 0.58 -10.43 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.18 6.89 2.27 45.08 0.10 6.99 16 15 H 0.07 2.47 5.23 -2.39 -0.01 2.46 16 16 C -0.11 -4.30 4.96 30.88 0.15 -4.15 16 17 C 0.07 1.98 3.67 45.35 0.17 2.15 16 18 H 0.09 2.58 8.11 -2.38 -0.02 2.56 16 19 C -0.14 -3.28 5.33 31.58 0.17 -3.11 16 20 C -0.14 -3.21 5.29 31.58 0.17 -3.04 16 21 C 0.07 1.99 3.68 45.32 0.17 2.15 16 22 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 23 C -0.10 -3.89 4.96 30.86 0.15 -3.73 16 24 N -0.53 -16.28 5.29 -853.51 -4.51 -20.80 16 25 C 0.02 0.40 9.46 127.69 1.21 1.61 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.05 1.98 8.04 -2.38 -0.02 1.96 16 34 H 0.04 1.76 4.91 -2.39 -0.01 1.75 16 35 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 36 H 0.03 1.67 7.48 -2.39 -0.02 1.65 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.08 1.52 8.10 -2.39 -0.02 1.51 16 39 H 0.07 1.73 7.03 -2.39 -0.02 1.71 16 40 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 41 H 0.07 1.70 7.03 -2.38 -0.02 1.68 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.03 1.29 6.91 -2.38 -0.02 1.27 16 44 H 0.04 0.81 6.88 -2.39 -0.02 0.79 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.43 337.46 2.04 -65.39 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.75 Total: 16.53 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.83 Total: -25.26 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -5.39 Total: -111.75 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 1.85 Total: 55.09 kcal Total: -67.43 2.04 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169146098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.467 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds