Wall clock time and date at job start Mon Mar 30 2020 01:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 H 1.08995 * 109.47007 * 55.74777 * 3 2 1 5 5 C 1.50697 * 109.47129 * 175.75480 * 3 2 1 6 6 H 1.07996 * 120.00483 * 121.23221 * 5 3 2 7 7 C 1.37876 * 119.99579 * 301.22787 * 5 3 2 8 8 N 1.31519 * 120.00153 * 164.70258 * 7 5 3 9 9 Si 1.86804 * 120.00366 * 344.70306 * 7 5 3 10 10 H 1.48499 * 109.46790 * 264.59086 * 9 7 5 11 11 H 1.48495 * 109.46966 * 24.58830 * 9 7 5 12 12 H 1.48501 * 109.47163 * 144.59048 * 9 7 5 13 13 N 1.46903 * 109.46703 * 295.75151 * 3 2 1 14 14 C 1.47117 * 111.00069 * 102.76361 * 13 3 2 15 15 H 1.09097 * 109.17237 * 331.67252 * 14 13 3 16 16 C 1.52936 * 109.33980 * 91.41460 * 14 13 3 17 17 C 1.53139 * 109.58587 * 177.02914 * 16 14 13 18 18 H 1.09113 * 108.88519 * 119.83136 * 17 16 14 19 19 C 1.52842 * 109.33843 * 239.10097 * 17 16 14 20 20 C 1.53013 * 109.69965 * 62.90658 * 19 17 16 21 21 C 1.52924 * 109.64717 * 56.47874 * 20 19 17 22 22 C 1.52780 * 109.90349 * 303.72397 * 21 20 19 23 23 H 1.09150 * 109.16709 * 177.34592 * 22 21 20 24 24 C 1.53045 * 109.42389 * 211.80256 * 14 13 3 25 25 N 1.46210 * 109.13270 * 0.33224 * 17 16 14 26 26 C 1.46240 * 113.17115 * 168.87994 * 25 17 16 27 27 H 1.09000 * 109.47242 * 183.36245 * 1 2 3 28 28 H 1.08995 * 109.47294 * 303.36581 * 1 2 3 29 29 H 1.09000 * 109.47026 * 63.36549 * 1 2 3 30 30 H 1.09003 * 109.47043 * 239.99718 * 2 1 3 31 31 H 1.09003 * 109.47006 * 120.00180 * 2 1 3 32 32 H 0.96995 * 120.00322 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00069 * 338.80834 * 13 3 2 34 34 H 1.08978 * 109.48393 * 296.69086 * 16 14 13 35 35 H 1.08908 * 109.79449 * 56.52729 * 16 14 13 36 36 H 1.09251 * 109.22825 * 303.27192 * 19 17 16 37 37 H 1.08793 * 110.16364 * 183.73907 * 19 17 16 38 38 H 1.09039 * 109.67713 * 295.83217 * 20 19 17 39 39 H 1.09190 * 109.24767 * 176.36137 * 20 19 17 40 40 H 1.09238 * 109.17104 * 184.11545 * 21 20 19 41 41 H 1.08869 * 109.81564 * 65.07060 * 21 20 19 42 42 H 1.08919 * 109.74131 * 303.97218 * 24 14 13 43 43 H 1.09021 * 109.37175 * 64.12018 * 24 14 13 44 44 H 1.09005 * 109.46650 * 189.12133 * 26 25 17 45 45 H 1.09000 * 109.47151 * 309.12290 * 26 25 17 46 46 H 1.09000 * 109.47065 * 69.12382 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 0.8494 5 6 3.5433 1.4437 0.1052 6 1 4.1383 1.9092 -0.6666 7 6 4.1591 0.8506 1.1868 8 7 5.4457 0.5809 1.1447 9 14 3.1662 0.4301 2.7122 10 1 3.2929 1.5285 3.7036 11 1 1.7383 0.2598 2.3419 12 1 3.6782 -0.8321 3.3038 13 7 1.6359 2.1047 -1.2475 14 6 0.4902 2.9996 -1.0222 15 1 -0.0994 2.6230 -0.1851 16 6 1.0008 4.4036 -0.6952 17 6 -0.1867 5.3568 -0.5325 18 1 -0.1705 5.7720 0.4764 19 6 -0.0657 6.4938 -1.5467 20 6 -0.1363 5.9281 -2.9666 21 6 -1.4334 5.1369 -3.1410 22 6 -1.5213 4.0418 -2.0793 23 1 -2.4719 3.5158 -2.1850 24 6 -0.3781 3.0419 -2.2818 25 7 -1.4292 4.6133 -0.7349 26 6 -2.6209 5.3682 -0.3494 27 1 -0.3634 -1.0259 0.0603 28 1 -0.3633 0.5652 0.8582 29 1 -0.3633 0.4607 -0.9186 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8788 0.1633 1.9055 33 1 1.4296 1.4271 -1.9661 34 1 1.5675 4.3768 0.2353 35 1 1.6471 4.7571 -1.4974 36 1 0.8933 6.9985 -1.4087 37 1 -0.8671 7.2147 -1.3992 38 1 0.7202 5.2775 -3.1457 39 1 -0.1145 6.7513 -3.6836 40 1 -1.4420 4.6759 -4.1313 41 1 -2.2878 5.8068 -3.0610 42 1 0.2268 3.3442 -3.1356 43 1 -0.7977 2.0525 -2.4651 44 1 -3.4899 4.7105 -0.3698 45 1 -2.4894 5.7656 0.6570 46 1 -2.7715 6.1911 -1.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172104703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:14 Heat of formation + Delta-G solvation = 3.019444 kcal Electronic energy + Delta-G solvation = -22345.537477 eV Core-core repulsion = 19462.516486 eV Total energy + Delta-G solvation = -2883.020990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54929 -36.77852 -33.28380 -32.94893 -32.53418 -31.75898 -29.53523 -27.18343 -25.79974 -25.23223 -23.21627 -22.37252 -21.85319 -20.38193 -19.79386 -17.34788 -16.67172 -16.37917 -15.53871 -15.10792 -14.77255 -14.51843 -13.78706 -13.65091 -13.38567 -13.34690 -12.97954 -12.80626 -12.72303 -12.51634 -12.35088 -11.78334 -11.66107 -11.32864 -11.14032 -11.12846 -10.91238 -10.85959 -10.80490 -10.68332 -10.56941 -10.18836 -9.98242 -9.74322 -9.71870 -9.19916 -9.11815 -8.28995 -7.93244 -7.17392 -5.97716 -3.88134 3.33508 3.43147 3.46474 3.96305 4.51240 4.66008 4.81889 4.90895 5.11403 5.13470 5.24742 5.30516 5.33177 5.35869 5.42030 5.49231 5.56183 5.69624 5.79477 5.86784 5.87912 5.93892 5.94685 5.95884 6.07004 6.09197 6.11547 6.12524 6.19759 6.32169 6.35865 6.46316 6.60441 6.69931 6.73328 6.87684 6.90620 7.05513 7.29966 7.36136 7.40746 7.89174 8.13312 8.51875 8.84618 9.20540 9.70340 11.16012 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.005791 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.569469 B = 4833.540169 C = 4989.718021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.196 3.804 4 H 0.022 0.978 5 C -0.495 4.495 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.855 3.145 10 H -0.285 1.285 11 H -0.248 1.248 12 H -0.290 1.290 13 N -0.674 5.674 14 C 0.105 3.895 15 H 0.053 0.947 16 C -0.099 4.099 17 C 0.096 3.904 18 H 0.075 0.925 19 C -0.145 4.145 20 C -0.119 4.119 21 C -0.145 4.145 22 C 0.101 3.899 23 H 0.073 0.927 24 C -0.118 4.118 25 N -0.549 5.549 26 C 0.039 3.961 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.260 0.740 33 H 0.325 0.675 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 8.793 -6.036 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C 0.087 3.913 4 H 0.040 0.960 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.682 3.318 10 H -0.211 1.211 11 H -0.173 1.173 12 H -0.216 1.216 13 N -0.303 5.303 14 C -0.005 4.005 15 H 0.071 0.929 16 C -0.137 4.137 17 C -0.013 4.013 18 H 0.093 0.907 19 C -0.185 4.185 20 C -0.156 4.156 21 C -0.184 4.184 22 C -0.008 4.008 23 H 0.092 0.908 24 C -0.156 4.156 25 N -0.271 5.271 26 C -0.109 4.109 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -15.618 8.845 -5.567 18.792 hybrid contribution -1.183 -0.215 0.552 1.323 sum -16.800 8.630 -5.015 19.542 Atomic orbital electron populations 1.21902 0.98376 0.99900 1.00710 1.22702 0.92931 1.01793 1.01874 1.19578 0.96293 0.87961 0.87495 0.96028 1.21046 0.89224 1.35443 1.07620 0.90304 1.24916 0.94686 0.95130 0.98446 1.69982 1.10500 1.42636 1.30549 0.87439 0.82242 0.77752 0.84333 1.21127 1.17260 1.21600 1.60700 1.35374 1.23918 1.10355 1.21199 0.90082 0.93551 0.95712 0.92885 1.21658 0.95197 0.94263 1.02610 1.21507 0.89632 0.92363 0.97839 0.90664 1.22082 1.01858 0.98396 0.96117 1.21497 0.98349 0.99458 0.96326 1.22049 0.97878 0.98655 0.99842 1.21378 0.99015 0.94229 0.86194 0.90840 1.21998 0.96206 0.97983 0.99426 1.59959 1.02057 1.39465 1.25661 1.22047 0.92504 0.96433 0.99948 0.94288 0.93585 0.93549 0.92524 0.92079 0.92983 0.85729 0.91505 0.91346 0.91457 0.92765 0.90628 0.92773 0.91761 0.92600 0.91154 0.92379 0.91921 0.91764 0.96077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.76 37.16 0.33 -2.38 16 2 C -0.15 -3.31 4.39 -26.73 -0.12 -3.43 16 3 C 0.20 4.55 1.65 -68.86 -0.11 4.44 16 4 H 0.02 0.53 6.43 -51.93 -0.33 0.20 16 5 C -0.50 -13.96 9.35 -34.44 -0.32 -14.28 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 2.00 5.33 -17.82 -0.09 1.91 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 9 Si 0.85 21.34 25.69 -169.99 -4.37 16.97 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.25 -5.80 5.22 56.52 0.30 -5.50 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 N -0.67 -13.47 5.90 -100.78 -0.59 -14.07 16 14 C 0.11 1.77 1.26 -67.60 -0.08 1.69 16 15 H 0.05 0.99 6.20 -51.87 -0.32 0.67 16 16 C -0.10 -1.62 5.08 -26.69 -0.14 -1.76 16 17 C 0.10 1.28 2.85 -68.10 -0.19 1.09 16 18 H 0.08 1.01 8.04 -51.87 -0.42 0.59 16 19 C -0.15 -1.69 5.04 -26.81 -0.14 -1.83 16 20 C -0.12 -1.34 5.48 -26.76 -0.15 -1.49 16 21 C -0.15 -1.55 4.99 -26.88 -0.13 -1.68 16 22 C 0.10 1.22 2.83 -67.99 -0.19 1.02 16 23 H 0.07 0.84 8.11 -51.84 -0.42 0.42 16 24 C -0.12 -1.61 4.73 -26.59 -0.13 -1.74 16 25 N -0.55 -7.04 3.66 -228.34 -0.84 -7.87 16 26 C 0.04 0.41 9.29 59.71 0.55 0.96 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 29 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 30 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.06 1.41 4.13 -51.93 -0.21 1.19 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.33 6.13 7.40 -39.29 -0.29 5.84 16 34 H 0.07 1.25 8.14 -51.94 -0.42 0.83 16 35 H 0.07 1.14 6.40 -51.98 -0.33 0.81 16 36 H 0.07 0.78 8.16 -51.79 -0.42 0.36 16 37 H 0.05 0.59 7.37 -52.05 -0.38 0.20 16 38 H 0.08 0.96 5.47 -51.91 -0.28 0.68 16 39 H 0.05 0.55 8.16 -51.82 -0.42 0.13 16 40 H 0.06 0.64 8.16 -51.79 -0.42 0.22 16 41 H 0.06 0.57 7.21 -52.00 -0.37 0.19 16 42 H 0.07 0.96 6.50 -51.97 -0.34 0.62 16 43 H 0.06 0.77 7.62 -51.92 -0.40 0.37 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 46 H 0.02 0.21 6.34 -51.93 -0.33 -0.12 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -29.62 322.64 -9.30 -38.92 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.22 Total: 5.62 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.92 Total: -17.48 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.66 Total: -48.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.37 Total: 16.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.62 -9.30 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172104703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.940 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds