Wall clock time and date at job start Mon Mar 30 2020 01:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 H 1.08995 * 109.47007 * 55.74777 * 3 2 1 5 5 C 1.50697 * 109.47129 * 175.75480 * 3 2 1 6 6 H 1.07996 * 120.00483 * 121.23221 * 5 3 2 7 7 C 1.37876 * 119.99579 * 301.22787 * 5 3 2 8 8 N 1.31519 * 120.00153 * 164.70258 * 7 5 3 9 9 Si 1.86804 * 120.00366 * 344.70306 * 7 5 3 10 10 H 1.48499 * 109.46790 * 264.59086 * 9 7 5 11 11 H 1.48495 * 109.46966 * 24.58830 * 9 7 5 12 12 H 1.48501 * 109.47163 * 144.59048 * 9 7 5 13 13 N 1.46903 * 109.46703 * 295.75151 * 3 2 1 14 14 C 1.47117 * 111.00069 * 102.76361 * 13 3 2 15 15 H 1.09097 * 109.17237 * 331.67252 * 14 13 3 16 16 C 1.52936 * 109.33980 * 91.41460 * 14 13 3 17 17 C 1.53139 * 109.58587 * 177.02914 * 16 14 13 18 18 H 1.09113 * 108.88519 * 119.83136 * 17 16 14 19 19 C 1.52842 * 109.33843 * 239.10097 * 17 16 14 20 20 C 1.53013 * 109.69965 * 62.90658 * 19 17 16 21 21 C 1.52924 * 109.64717 * 56.47874 * 20 19 17 22 22 C 1.52780 * 109.90349 * 303.72397 * 21 20 19 23 23 H 1.09150 * 109.16709 * 177.34592 * 22 21 20 24 24 C 1.53045 * 109.42389 * 211.80256 * 14 13 3 25 25 N 1.46210 * 109.13270 * 0.33224 * 17 16 14 26 26 C 1.46240 * 113.17115 * 168.87994 * 25 17 16 27 27 H 1.09000 * 109.47242 * 183.36245 * 1 2 3 28 28 H 1.08995 * 109.47294 * 303.36581 * 1 2 3 29 29 H 1.09000 * 109.47026 * 63.36549 * 1 2 3 30 30 H 1.09003 * 109.47043 * 239.99718 * 2 1 3 31 31 H 1.09003 * 109.47006 * 120.00180 * 2 1 3 32 32 H 0.96995 * 120.00322 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00069 * 338.80834 * 13 3 2 34 34 H 1.08978 * 109.48393 * 296.69086 * 16 14 13 35 35 H 1.08908 * 109.79449 * 56.52729 * 16 14 13 36 36 H 1.09251 * 109.22825 * 303.27192 * 19 17 16 37 37 H 1.08793 * 110.16364 * 183.73907 * 19 17 16 38 38 H 1.09039 * 109.67713 * 295.83217 * 20 19 17 39 39 H 1.09190 * 109.24767 * 176.36137 * 20 19 17 40 40 H 1.09238 * 109.17104 * 184.11545 * 21 20 19 41 41 H 1.08869 * 109.81564 * 65.07060 * 21 20 19 42 42 H 1.08919 * 109.74131 * 303.97218 * 24 14 13 43 43 H 1.09021 * 109.37175 * 64.12018 * 24 14 13 44 44 H 1.09005 * 109.46650 * 189.12133 * 26 25 17 45 45 H 1.09000 * 109.47151 * 309.12290 * 26 25 17 46 46 H 1.09000 * 109.47065 * 69.12382 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 0.8494 5 6 3.5433 1.4437 0.1052 6 1 4.1383 1.9092 -0.6666 7 6 4.1591 0.8506 1.1868 8 7 5.4457 0.5809 1.1447 9 14 3.1662 0.4301 2.7122 10 1 3.2929 1.5285 3.7036 11 1 1.7383 0.2598 2.3419 12 1 3.6782 -0.8321 3.3038 13 7 1.6359 2.1047 -1.2475 14 6 0.4902 2.9996 -1.0222 15 1 -0.0994 2.6230 -0.1851 16 6 1.0008 4.4036 -0.6952 17 6 -0.1867 5.3568 -0.5325 18 1 -0.1705 5.7720 0.4764 19 6 -0.0657 6.4938 -1.5467 20 6 -0.1363 5.9281 -2.9666 21 6 -1.4334 5.1369 -3.1410 22 6 -1.5213 4.0418 -2.0793 23 1 -2.4719 3.5158 -2.1850 24 6 -0.3781 3.0419 -2.2818 25 7 -1.4292 4.6133 -0.7349 26 6 -2.6209 5.3682 -0.3494 27 1 -0.3634 -1.0259 0.0603 28 1 -0.3633 0.5652 0.8582 29 1 -0.3633 0.4607 -0.9186 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8788 0.1633 1.9055 33 1 1.4296 1.4271 -1.9661 34 1 1.5675 4.3768 0.2353 35 1 1.6471 4.7571 -1.4974 36 1 0.8933 6.9985 -1.4087 37 1 -0.8671 7.2147 -1.3992 38 1 0.7202 5.2775 -3.1457 39 1 -0.1145 6.7513 -3.6836 40 1 -1.4420 4.6759 -4.1313 41 1 -2.2878 5.8068 -3.0610 42 1 0.2268 3.3442 -3.1356 43 1 -0.7977 2.0525 -2.4651 44 1 -3.4899 4.7105 -0.3698 45 1 -2.4894 5.7656 0.6570 46 1 -2.7715 6.1911 -1.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172104703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:14 Heat of formation + Delta-G solvation = -16.957819 kcal Electronic energy + Delta-G solvation = -22346.403756 eV Core-core repulsion = 19462.516486 eV Total energy + Delta-G solvation = -2883.887269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60110 -38.40537 -34.94618 -33.85861 -33.68545 -33.56146 -30.98643 -28.92345 -26.87697 -26.43153 -24.38924 -23.96890 -22.88645 -21.74642 -21.48332 -18.86075 -18.23814 -17.51181 -16.93658 -16.63382 -16.17181 -15.61503 -15.29083 -15.15210 -14.74347 -14.40764 -14.33344 -14.12325 -13.92044 -13.81967 -13.50361 -13.34164 -13.21602 -12.68204 -12.59515 -12.37302 -12.24102 -12.17355 -12.10699 -11.91493 -11.81996 -11.69796 -11.51241 -11.17399 -11.11155 -10.95222 -10.85880 -10.48060 -8.94958 -8.74677 -8.24274 -6.19157 1.32545 1.38102 1.46425 2.37949 3.00387 3.08980 3.50221 3.86588 3.93904 3.96963 4.15521 4.21391 4.26736 4.34705 4.35652 4.40087 4.44199 4.53027 4.55019 4.66547 4.68336 4.82588 4.89095 4.89530 4.96696 5.01788 5.03327 5.08198 5.13381 5.14114 5.17317 5.18792 5.22140 5.25151 5.31725 5.42184 5.50562 5.57738 5.60521 5.79691 6.20062 6.37717 6.46270 6.83859 6.86511 6.96560 7.44250 8.93465 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.005791 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.569469 B = 4833.540169 C = 4989.718021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.152 4.152 3 C 0.206 3.794 4 H 0.013 0.987 5 C -0.500 4.500 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.921 3.079 10 H -0.286 1.286 11 H -0.220 1.220 12 H -0.287 1.287 13 N -0.686 5.686 14 C 0.111 3.889 15 H 0.042 0.958 16 C -0.097 4.097 17 C 0.102 3.898 18 H 0.073 0.927 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.139 4.139 22 C 0.102 3.898 23 H 0.089 0.911 24 C -0.112 4.112 25 N -0.564 5.564 26 C 0.040 3.960 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.332 0.668 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.956 9.058 -6.338 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.191 4.191 3 C 0.096 3.904 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.746 3.254 10 H -0.213 1.213 11 H -0.143 1.143 12 H -0.213 1.213 13 N -0.316 5.316 14 C 0.001 3.999 15 H 0.060 0.940 16 C -0.136 4.136 17 C -0.007 4.007 18 H 0.091 0.909 19 C -0.179 4.179 20 C -0.157 4.157 21 C -0.178 4.178 22 C -0.007 4.007 23 H 0.107 0.893 24 C -0.150 4.150 25 N -0.287 5.287 26 C -0.107 4.107 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.354 9.122 -5.890 22.192 hybrid contribution 0.064 -0.241 0.561 0.614 sum -19.290 8.880 -5.330 21.894 Atomic orbital electron populations 1.21784 0.94899 1.01615 1.01480 1.22556 0.95966 0.99598 1.01019 1.19289 0.92876 0.89629 0.88618 0.96950 1.21348 0.91938 1.34319 1.06268 0.95198 1.25746 0.95691 0.95293 1.01706 1.70131 1.12654 1.44443 1.31680 0.86367 0.82153 0.77269 0.79617 1.21251 1.14295 1.21309 1.60529 1.37715 1.24194 1.09203 1.21178 0.89129 0.92476 0.97131 0.93985 1.21610 0.96357 0.95311 1.00300 1.21332 0.88906 0.92040 0.98419 0.90917 1.22019 1.02205 0.97863 0.95848 1.21488 0.98183 0.99698 0.96281 1.21996 0.97682 0.98288 0.99824 1.21404 0.98635 0.94287 0.86332 0.89255 1.21944 0.96299 0.99419 0.97341 1.59917 1.02372 1.40075 1.26318 1.22090 0.91639 0.96774 1.00237 0.91946 0.93760 0.91991 0.92847 0.93569 0.92910 0.84950 0.94993 0.92368 0.92000 0.91186 0.92614 0.91420 0.90719 0.91238 0.91288 0.91357 0.90764 0.91642 0.95039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.76 71.98 0.63 -3.94 16 2 C -0.15 -6.36 4.39 30.59 0.13 -6.22 16 3 C 0.21 9.64 1.65 44.17 0.07 9.71 16 4 H 0.01 0.62 6.43 -2.39 -0.02 0.60 16 5 C -0.50 -29.40 9.35 25.60 0.24 -29.16 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.73 5.33 84.65 0.45 1.18 16 8 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 9 Si 0.92 44.75 25.69 68.60 1.76 46.51 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.22 -9.62 5.22 99.48 0.52 -9.10 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 N -0.69 -27.68 5.90 -472.75 -2.79 -30.47 16 14 C 0.11 3.66 1.26 44.87 0.06 3.72 16 15 H 0.04 1.51 6.20 -2.34 -0.01 1.49 16 16 C -0.10 -3.24 5.08 30.62 0.16 -3.08 16 17 C 0.10 2.63 2.85 45.04 0.13 2.76 16 18 H 0.07 1.89 8.04 -2.33 -0.02 1.87 16 19 C -0.14 -3.02 5.04 30.55 0.15 -2.86 16 20 C -0.12 -2.44 5.48 30.57 0.17 -2.27 16 21 C -0.14 -2.48 4.99 30.50 0.15 -2.33 16 22 C 0.10 2.14 2.83 45.02 0.13 2.26 16 23 H 0.09 1.64 8.11 -2.31 -0.02 1.62 16 24 C -0.11 -2.82 4.73 30.69 0.14 -2.68 16 25 N -0.56 -13.00 3.66 -876.34 -3.21 -16.21 16 26 C 0.04 0.70 9.29 127.82 1.19 1.89 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.46 8.02 -2.39 -0.02 1.44 16 29 H 0.06 1.81 6.37 -2.39 -0.02 1.80 16 30 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 31 H 0.05 2.05 4.13 -2.39 -0.01 2.04 16 32 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.33 12.40 7.40 -89.70 -0.66 11.73 16 34 H 0.03 1.25 8.14 -2.40 -0.02 1.23 16 35 H 0.06 2.02 6.40 -2.44 -0.02 2.00 16 36 H 0.06 1.38 8.16 -2.25 -0.02 1.37 16 37 H 0.07 1.31 7.37 -2.50 -0.02 1.29 16 38 H 0.06 1.37 5.47 -2.37 -0.01 1.35 16 39 H 0.07 1.21 8.16 -2.29 -0.02 1.19 16 40 H 0.07 1.21 8.16 -2.26 -0.02 1.19 16 41 H 0.07 1.10 7.21 -2.46 -0.02 1.08 16 42 H 0.07 1.77 6.50 -2.43 -0.02 1.76 16 43 H 0.07 1.59 7.62 -2.38 -0.02 1.57 16 44 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.06 1.14 8.04 -2.39 -0.02 1.12 16 46 H 0.03 0.50 6.34 -2.39 -0.02 0.48 16 Total: -1.00 -66.72 322.64 -0.04 -66.75 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.10 Total: 25.00 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.80 Total: -31.02 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -5.70 Total: -107.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.76 Total: 46.51 kcal Total: -66.72 -0.04 -66.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172104703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.795 kcal (2) G-P(sol) polarization free energy of solvation -66.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds