Wall clock time and date at job start Mon Mar 30 2020 00:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 114.00107 * 2 1 4 4 H 1.09007 * 109.47288 * 29.99764 * 3 2 1 5 5 C 1.53002 * 109.47090 * 270.00443 * 3 2 1 6 6 C 1.52998 * 109.46757 * 299.99833 * 5 3 2 7 7 C 1.53008 * 109.47162 * 300.00207 * 6 5 3 8 8 C 1.52997 * 109.47120 * 60.00253 * 7 6 5 9 9 H 1.08996 * 109.47378 * 59.99806 * 8 7 6 10 10 N 1.46898 * 109.47006 * 180.02562 * 8 7 6 11 11 C 1.46907 * 111.00125 * 58.95345 * 10 8 7 12 12 C 1.50694 * 109.47055 * 164.61425 * 11 10 8 13 13 H 1.07995 * 120.00208 * 355.09708 * 12 11 10 14 14 C 1.37875 * 119.99857 * 175.08656 * 12 11 10 15 15 N 1.31517 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00292 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46817 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47317 * 120.00095 * 16 14 12 19 19 H 1.48499 * 109.47253 * 240.00470 * 16 14 12 20 20 C 1.46893 * 111.00005 * 294.99617 * 10 8 7 21 21 C 1.53004 * 109.47459 * 284.19673 * 20 10 8 22 22 C 1.47200 * 109.47287 * 185.43922 * 21 20 10 23 23 N 7.42898 * 147.88290 * 184.61659 * 2 1 3 24 24 C 1.52996 * 109.47323 * 149.99840 * 3 2 1 25 25 H 1.08996 * 109.46814 * 59.99762 * 1 2 3 26 26 H 1.08995 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46998 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47319 * 59.99969 * 5 3 2 29 29 H 1.08999 * 109.46872 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.47452 * 60.00259 * 6 5 3 31 31 H 1.09000 * 109.47118 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47153 * 299.99921 * 7 6 5 33 33 H 1.08997 * 109.46927 * 180.02562 * 7 6 5 34 34 H 1.08993 * 109.46864 * 284.61861 * 11 10 8 35 35 H 1.09000 * 109.46790 * 44.61682 * 11 10 8 36 36 H 0.97000 * 120.00528 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47273 * 44.20072 * 20 10 8 38 38 H 1.09002 * 109.46895 * 164.19309 * 20 10 8 39 39 H 1.09003 * 109.46475 * 305.44016 * 21 20 10 40 40 H 1.08997 * 109.46898 * 65.43796 * 21 20 10 41 41 H 1.09004 * 109.47313 * 300.00264 * 24 3 2 42 42 H 1.08996 * 109.47391 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1514 0.7973 -2.1638 7 6 4.5002 0.7551 -1.4425 8 6 4.2928 0.2891 0.0000 9 1 3.8494 -0.7066 0.0000 10 7 5.5876 0.2492 0.6926 11 6 6.2268 1.5719 0.6906 12 6 7.3385 1.5941 1.7077 13 1 7.4984 0.7420 2.3516 14 6 8.1517 2.7022 1.8160 15 7 7.9569 3.7400 1.0320 16 14 9.5303 2.7295 3.0763 17 1 9.5389 1.4489 3.8282 18 1 10.8317 2.9046 2.3827 19 1 9.3165 3.8564 4.0194 20 6 6.4710 -0.7634 0.0992 21 6 6.0221 -2.1564 0.5452 22 6 6.9821 -3.1605 0.0584 23 7 7.7212 -3.9368 -0.3179 24 6 3.3590 1.2632 0.7213 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2569 1.8015 -1.9563 29 1 2.6615 2.7669 -1.4425 30 1 2.7081 -0.1985 -2.1638 31 1 3.2995 1.1295 -3.1913 32 1 4.9435 1.7508 -1.4425 33 1 5.1655 0.0615 -1.9566 34 1 6.6354 1.7764 -0.2989 35 1 5.4882 2.3327 0.9430 36 1 8.5292 4.5195 1.1079 37 1 6.4219 -0.6964 -0.9877 38 1 7.4956 -0.5891 0.4279 39 1 5.9787 -2.1929 1.6337 40 1 5.0349 -2.3687 0.1348 41 1 3.2112 0.9313 1.7490 42 1 3.8025 2.2589 0.7209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172942361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:09 Heat of formation + Delta-G solvation = -29.356790 kcal Electronic energy + Delta-G solvation = -21151.413628 eV Core-core repulsion = 18131.155604 eV Total energy + Delta-G solvation = -3020.258024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.56871 -37.48658 -36.26838 -34.53009 -32.66638 -31.12715 -30.01474 -28.76209 -26.45066 -26.22014 -23.31624 -22.59391 -22.11482 -20.26519 -18.64141 -17.14582 -16.53071 -16.10072 -15.61305 -15.28524 -15.02834 -14.56584 -14.35442 -14.04581 -13.63333 -13.44841 -13.18828 -12.69867 -12.52666 -12.42567 -12.20108 -11.94478 -11.92984 -11.49026 -11.46281 -11.26405 -11.07947 -10.96509 -10.70821 -10.57352 -10.43882 -10.21885 -10.06090 -9.83359 -9.56772 -9.32875 -9.16609 -8.42509 -7.24307 -6.03822 -4.04571 3.04066 3.08163 3.30742 3.39081 3.43553 3.91205 4.25373 4.44182 4.85238 4.95691 5.04351 5.26010 5.30664 5.31397 5.32918 5.47023 5.52559 5.57532 5.61426 5.65011 5.72122 5.78054 5.86358 5.90625 6.05093 6.16190 6.23982 6.26000 6.38226 6.49109 6.51683 6.65238 6.75432 6.81727 7.25586 7.34426 7.37449 7.81099 7.86004 8.08745 8.15277 8.53734 9.04557 9.60172 11.06403 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.006449 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.172486 B = 4340.813885 C = 5669.689295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.140 4.140 6 C -0.106 4.106 7 C -0.156 4.156 8 C 0.091 3.909 9 H 0.078 0.922 10 N -0.529 5.529 11 C 0.189 3.811 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.063 3.937 21 C -0.027 4.027 22 C 0.220 3.780 23 N -0.460 5.460 24 C -0.108 4.108 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.059 0.941 34 H -0.001 1.001 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -4.483 -3.352 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.178 4.178 6 C -0.144 4.144 7 C -0.195 4.195 8 C -0.018 4.018 9 H 0.096 0.904 10 N -0.252 5.252 11 C 0.065 3.935 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.067 4.067 21 C -0.067 4.067 22 C -0.097 4.097 23 N -0.138 5.138 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.017 0.983 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.068 -5.761 -3.437 14.690 hybrid contribution 0.410 1.044 -0.122 1.128 sum -12.659 -4.716 -3.558 13.970 Atomic orbital electron populations 1.22722 0.82230 1.02169 0.99469 1.87952 1.18539 1.28189 1.94977 1.22208 0.95182 0.84067 0.95229 0.92543 1.22018 0.99519 0.99942 0.96316 1.21326 0.95571 0.99557 0.97949 1.22272 0.96764 1.02532 0.97951 1.21580 0.91183 0.98832 0.90220 0.90387 1.62259 1.02437 1.09035 1.51472 1.19808 0.93853 0.83750 0.96131 1.21242 1.13302 1.01454 1.18493 0.91749 1.24964 0.97725 0.95675 0.96155 1.69955 1.39463 1.05626 1.38817 0.86519 0.81904 0.78075 0.81401 1.19622 1.21236 1.21095 1.21903 0.99198 0.88835 0.96775 1.19420 0.94068 0.89993 1.03257 1.29434 0.93886 0.93702 0.92705 1.81151 1.10732 1.11716 1.10159 1.21742 0.92104 1.01249 0.99412 0.94601 0.90133 0.94401 0.92614 0.91013 0.91727 0.92953 0.91186 0.92218 0.98347 0.94718 0.93048 0.94690 0.89123 0.86656 0.88127 0.90715 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.76 9.00 -35.23 -0.32 -5.08 16 3 C 0.09 1.15 2.92 -26.73 -0.08 1.08 16 4 H 0.06 0.65 7.79 -51.92 -0.40 0.24 16 5 C -0.14 -1.70 5.63 -26.73 -0.15 -1.85 16 6 C -0.11 -1.36 5.78 -26.73 -0.15 -1.52 16 7 C -0.16 -2.39 4.58 -26.73 -0.12 -2.51 16 8 C 0.09 1.43 2.00 -67.71 -0.14 1.29 16 9 H 0.08 1.16 6.39 -51.93 -0.33 0.83 16 10 N -0.53 -9.81 4.37 -228.09 -1.00 -10.81 16 11 C 0.19 4.41 3.65 -4.98 -0.02 4.39 16 12 C -0.51 -13.26 8.27 -34.44 -0.28 -13.54 16 13 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 14 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C 0.06 1.06 4.66 -3.83 -0.02 1.04 16 21 C -0.03 -0.36 5.73 -29.52 -0.17 -0.52 16 22 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 23 N -0.46 -8.08 18.54 42.15 0.78 -7.30 16 24 C -0.11 -1.64 4.79 -26.73 -0.13 -1.77 16 25 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.06 0.59 7.87 -51.93 -0.41 0.19 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.24 6.74 -51.93 -0.35 0.89 16 33 H 0.06 0.91 6.25 -51.93 -0.32 0.59 16 34 H 0.00 -0.03 7.12 -51.93 -0.37 -0.40 16 35 H 0.03 0.86 5.69 -51.93 -0.30 0.56 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.04 0.58 5.88 -51.93 -0.31 0.27 16 38 H 0.09 1.76 7.08 -51.93 -0.37 1.40 16 39 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.10 1.14 7.04 -51.93 -0.37 0.77 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.45 6.13 -51.93 -0.32 1.13 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -29.19 330.18 -7.15 -36.34 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.73 Total: -1.23 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.58 Total: -8.09 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.52 Total: -42.97 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.32 Total: -5.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.19 -7.15 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.979 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds