Wall clock time and date at job start Mon Mar 30 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 114.00107 * 2 1 4 4 H 1.09007 * 109.47288 * 29.99764 * 3 2 1 5 5 C 1.53002 * 109.47090 * 270.00443 * 3 2 1 6 6 C 1.52998 * 109.46757 * 299.99833 * 5 3 2 7 7 C 1.53008 * 109.47162 * 300.00207 * 6 5 3 8 8 C 1.52997 * 109.47120 * 60.00253 * 7 6 5 9 9 H 1.08996 * 109.47378 * 59.99806 * 8 7 6 10 10 N 1.46898 * 109.47006 * 180.02562 * 8 7 6 11 11 C 1.46907 * 111.00125 * 58.95345 * 10 8 7 12 12 C 1.50694 * 109.47055 * 164.61425 * 11 10 8 13 13 H 1.07995 * 120.00208 * 355.09708 * 12 11 10 14 14 C 1.37875 * 119.99857 * 175.08656 * 12 11 10 15 15 N 1.31517 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00292 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46817 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47317 * 120.00095 * 16 14 12 19 19 H 1.48499 * 109.47253 * 240.00470 * 16 14 12 20 20 C 1.46893 * 111.00005 * 294.99617 * 10 8 7 21 21 C 1.53004 * 109.47459 * 284.19673 * 20 10 8 22 22 C 1.47200 * 109.47287 * 185.43922 * 21 20 10 23 23 N 7.42898 * 147.88290 * 184.61659 * 2 1 3 24 24 C 1.52996 * 109.47323 * 149.99840 * 3 2 1 25 25 H 1.08996 * 109.46814 * 59.99762 * 1 2 3 26 26 H 1.08995 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46998 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47319 * 59.99969 * 5 3 2 29 29 H 1.08999 * 109.46872 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.47452 * 60.00259 * 6 5 3 31 31 H 1.09000 * 109.47118 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47153 * 299.99921 * 7 6 5 33 33 H 1.08997 * 109.46927 * 180.02562 * 7 6 5 34 34 H 1.08993 * 109.46864 * 284.61861 * 11 10 8 35 35 H 1.09000 * 109.46790 * 44.61682 * 11 10 8 36 36 H 0.97000 * 120.00528 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47273 * 44.20072 * 20 10 8 38 38 H 1.09002 * 109.46895 * 164.19309 * 20 10 8 39 39 H 1.09003 * 109.46475 * 305.44016 * 21 20 10 40 40 H 1.08997 * 109.46898 * 65.43796 * 21 20 10 41 41 H 1.09004 * 109.47313 * 300.00264 * 24 3 2 42 42 H 1.08996 * 109.47391 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1514 0.7973 -2.1638 7 6 4.5002 0.7551 -1.4425 8 6 4.2928 0.2891 0.0000 9 1 3.8494 -0.7066 0.0000 10 7 5.5876 0.2492 0.6926 11 6 6.2268 1.5719 0.6906 12 6 7.3385 1.5941 1.7077 13 1 7.4984 0.7420 2.3516 14 6 8.1517 2.7022 1.8160 15 7 7.9569 3.7400 1.0320 16 14 9.5303 2.7295 3.0763 17 1 9.5389 1.4489 3.8282 18 1 10.8317 2.9046 2.3827 19 1 9.3165 3.8564 4.0194 20 6 6.4710 -0.7634 0.0992 21 6 6.0221 -2.1564 0.5452 22 6 6.9821 -3.1605 0.0584 23 7 7.7212 -3.9368 -0.3179 24 6 3.3590 1.2632 0.7213 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2569 1.8015 -1.9563 29 1 2.6615 2.7669 -1.4425 30 1 2.7081 -0.1985 -2.1638 31 1 3.2995 1.1295 -3.1913 32 1 4.9435 1.7508 -1.4425 33 1 5.1655 0.0615 -1.9566 34 1 6.6354 1.7764 -0.2989 35 1 5.4882 2.3327 0.9430 36 1 8.5292 4.5195 1.1079 37 1 6.4219 -0.6964 -0.9877 38 1 7.4956 -0.5891 0.4279 39 1 5.9787 -2.1929 1.6337 40 1 5.0349 -2.3687 0.1348 41 1 3.2112 0.9313 1.7490 42 1 3.8025 2.2589 0.7209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172942361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:08 Heat of formation + Delta-G solvation = -47.200604 kcal Electronic energy + Delta-G solvation = -21152.187393 eV Core-core repulsion = 18131.155604 eV Total energy + Delta-G solvation = -3021.031789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75969 -38.67996 -37.53528 -35.76772 -34.60521 -32.43759 -31.15327 -30.24778 -27.91693 -27.20403 -24.86089 -24.15284 -23.26504 -21.44230 -19.99385 -18.50030 -18.29373 -17.28519 -16.72278 -16.53852 -16.21518 -16.12211 -15.64268 -15.19589 -14.97478 -14.88914 -14.37139 -14.12294 -13.95411 -13.67794 -13.53832 -13.37583 -13.11911 -12.87260 -12.78389 -12.62067 -12.51603 -12.32037 -12.23452 -12.05098 -11.72711 -11.58261 -11.46894 -11.25636 -11.04626 -10.80605 -10.49540 -10.28252 -8.81813 -8.12022 -6.19375 1.42451 1.45029 1.56368 1.78265 1.85746 2.45019 2.99438 3.02008 3.21234 3.59045 3.90512 3.96324 4.06165 4.29490 4.32304 4.37644 4.43803 4.55888 4.57787 4.65309 4.71178 4.74090 4.79394 4.89905 4.94452 5.01304 5.08629 5.13102 5.15884 5.26571 5.31802 5.38224 5.40082 5.47567 5.52146 5.65800 5.77599 6.20462 6.43497 6.48245 6.63053 6.79252 6.99408 7.49766 8.97706 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.006449 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.172486 B = 4340.813885 C = 5669.689295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.151 4.151 8 C 0.093 3.907 9 H 0.099 0.901 10 N -0.530 5.530 11 C 0.209 3.791 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.281 1.281 20 C 0.063 3.937 21 C -0.011 4.011 22 C 0.243 3.757 23 N -0.501 5.501 24 C -0.106 4.106 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.058 0.942 34 H -0.033 1.033 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 -5.760 -3.080 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.041 3.959 4 H 0.088 0.912 5 C -0.177 4.177 6 C -0.138 4.138 7 C -0.190 4.190 8 C -0.015 4.015 9 H 0.117 0.883 10 N -0.252 5.252 11 C 0.083 3.917 12 C -0.553 4.553 13 H 0.082 0.918 14 C -0.194 4.194 15 N -0.576 5.576 16 Si 0.781 3.219 17 H -0.188 1.188 18 H -0.213 1.213 19 H -0.207 1.207 20 C -0.067 4.067 21 C -0.051 4.051 22 C -0.074 4.074 23 N -0.179 5.179 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.077 0.923 34 H -0.015 1.015 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.827 -7.061 -3.163 16.725 hybrid contribution 0.888 1.435 -0.225 1.702 sum -13.939 -5.626 -3.388 15.409 Atomic orbital electron populations 1.22929 0.80346 1.03508 1.00373 1.87903 1.20549 1.27629 1.95089 1.22028 0.93846 0.84828 0.95208 0.91224 1.22010 1.00352 0.99119 0.96182 1.21284 0.93988 1.00402 0.98083 1.22192 0.98276 1.00473 0.98108 1.21674 0.89614 1.00053 0.90181 0.88292 1.62178 1.03408 1.06898 1.52729 1.19387 0.92787 0.85981 0.93582 1.21606 1.13859 1.01149 1.18639 0.91817 1.25751 1.00130 0.95490 0.97999 1.70074 1.40658 1.06283 1.40540 0.85546 0.78894 0.78323 0.79146 1.18763 1.21259 1.20658 1.21837 0.97524 0.90421 0.96875 1.19374 0.94716 0.86837 1.04144 1.29625 0.93134 0.93108 0.91524 1.81179 1.11927 1.13195 1.11614 1.21663 0.93691 0.99461 0.99589 0.93488 0.88647 0.93709 0.90304 0.92038 0.90699 0.92101 0.94486 0.92344 1.01501 0.96426 0.93063 0.94478 0.92166 0.85215 0.84927 0.91280 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.39 -8.70 9.00 -148.98 -1.34 -10.04 16 3 C 0.10 2.32 2.92 30.59 0.09 2.41 16 4 H 0.07 1.46 7.79 -2.38 -0.02 1.44 16 5 C -0.14 -3.11 5.63 30.59 0.17 -2.94 16 6 C -0.10 -2.38 5.78 30.60 0.18 -2.21 16 7 C -0.15 -4.60 4.58 30.60 0.14 -4.46 16 8 C 0.09 2.85 2.00 44.92 0.09 2.93 16 9 H 0.10 2.67 6.39 -2.39 -0.02 2.65 16 10 N -0.53 -19.66 4.37 -875.53 -3.83 -23.48 16 11 C 0.21 10.09 3.65 85.55 0.31 10.40 16 12 C -0.51 -27.48 8.27 25.60 0.21 -27.27 16 13 H 0.06 3.35 7.79 -2.91 -0.02 3.32 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 16 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.06 2.11 4.66 86.31 0.40 2.51 16 21 C -0.01 -0.25 5.73 28.79 0.16 -0.09 16 22 C 0.24 6.97 15.43 89.44 1.38 8.35 16 23 N -0.50 -17.10 18.54 20.01 0.37 -16.73 16 24 C -0.11 -3.21 4.79 30.60 0.15 -3.06 16 25 H 0.05 0.62 7.87 -2.39 -0.02 0.60 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 0.62 8.09 -2.39 -0.02 0.60 16 28 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.68 7.68 -2.39 -0.02 1.66 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.36 6.74 -2.39 -0.02 1.34 16 33 H 0.06 1.76 6.25 -2.39 -0.01 1.75 16 34 H -0.03 -1.77 7.12 -2.39 -0.02 -1.79 16 35 H 0.02 0.92 5.69 -2.39 -0.01 0.91 16 36 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.04 1.22 5.88 -2.39 -0.01 1.20 16 38 H 0.06 2.38 7.08 -2.39 -0.02 2.36 16 39 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.13 2.46 7.04 -2.39 -0.02 2.45 16 41 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.06 2.05 6.13 -2.39 -0.01 2.04 16 Total: -1.00 -64.09 330.18 3.49 -60.60 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.00 Total: 9.53 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.97 Total: -11.14 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -3.17 Total: -94.67 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.34 Total: -10.04 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.09 3.49 -60.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.402 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds