Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00074 * 2 1 4 4 H 1.09000 * 109.47021 * 30.00084 * 3 2 1 5 5 C 1.53000 * 109.47129 * 270.00363 * 3 2 1 6 6 C 1.52992 * 109.46960 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47526 * 59.99501 * 6 5 3 8 8 C 1.53000 * 109.47408 * 300.00225 * 7 6 5 9 9 H 1.09000 * 109.46941 * 299.99811 * 8 7 6 10 10 N 1.46903 * 109.46980 * 179.97438 * 8 7 6 11 11 C 1.46895 * 110.99739 * 306.04206 * 10 8 7 12 12 C 1.50702 * 109.46770 * 190.00200 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.46893 * 111.00134 * 69.99837 * 10 8 7 21 21 C 1.53003 * 109.47188 * 66.04489 * 20 10 8 22 22 C 1.47198 * 109.47313 * 180.02562 * 21 20 10 23 23 N 8.88478 * 119.44215 * 23.06726 * 2 1 3 24 24 C 1.52992 * 109.46960 * 59.99429 * 8 7 6 25 25 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47242 * 300.00086 * 1 2 3 27 27 H 1.09001 * 109.47629 * 59.99532 * 1 2 3 28 28 H 1.08996 * 109.47307 * 59.99555 * 5 3 2 29 29 H 1.09000 * 109.46941 * 299.99770 * 5 3 2 30 30 H 1.09000 * 109.46981 * 299.99593 * 6 5 3 31 31 H 1.09004 * 109.47209 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.47279 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46915 * 60.00051 * 7 6 5 34 34 H 1.09004 * 109.47258 * 70.00524 * 11 10 8 35 35 H 1.08994 * 109.47601 * 310.00116 * 11 10 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47044 * 186.03970 * 20 10 8 38 38 H 1.09000 * 109.47653 * 306.04351 * 20 10 8 39 39 H 1.09006 * 109.46896 * 299.99588 * 21 20 10 40 40 H 1.09005 * 109.47248 * 59.99726 * 21 20 10 41 41 H 1.09000 * 109.46981 * 60.00407 * 24 8 7 42 42 H 1.09005 * 109.47177 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1892 3.1261 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2351 10 7 5.2769 2.6186 1.4132 11 6 6.2458 1.8035 0.6684 12 6 7.4713 1.5801 1.5165 13 1 7.5249 2.0011 2.5096 14 6 8.5217 0.8329 1.0269 15 7 8.4563 0.3200 -0.1823 16 14 10.0375 0.5496 2.0811 17 1 9.6478 -0.1542 3.3294 18 1 11.0150 -0.2784 1.3300 19 1 10.6550 1.8564 2.4218 20 6 5.7951 3.9738 1.6425 21 6 4.8812 4.7099 2.6243 22 6 5.4000 6.0682 2.8536 23 7 5.7962 7.1187 3.0316 24 6 3.3589 1.2628 0.7211 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.2568 1.8015 -1.9563 29 1 2.8828 1.0776 -1.9563 30 1 2.1755 3.8630 -0.9285 31 1 2.9886 3.5007 -2.4701 32 1 4.6331 4.1216 -0.7218 33 1 4.8541 2.4320 -1.2354 34 1 6.5279 2.3216 -0.2483 35 1 5.7965 0.8423 0.4189 36 1 9.1954 -0.2054 -0.5269 37 1 6.8007 3.9128 2.0583 38 1 5.8249 4.5162 0.6975 39 1 3.8754 4.7710 2.2085 40 1 4.8513 4.1676 3.5694 41 1 4.0238 0.5686 0.2071 42 1 3.2116 0.9306 1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172942363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = -31.015314 kcal Electronic energy + Delta-G solvation = -20978.997438 eV Core-core repulsion = 17958.667495 eV Total energy + Delta-G solvation = -3020.329943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.53026 -37.63856 -36.38926 -34.79335 -32.69136 -31.15962 -30.00260 -28.80650 -26.40095 -26.22895 -23.34340 -22.57531 -22.15656 -20.45102 -18.76361 -17.25428 -16.65990 -16.24966 -15.51033 -15.27776 -14.97582 -14.60309 -14.40440 -14.04674 -13.83688 -13.47102 -13.36830 -12.93871 -12.70393 -12.32921 -12.23659 -11.96086 -11.87123 -11.64232 -11.57307 -11.18259 -10.99993 -10.86909 -10.77643 -10.61163 -10.46665 -10.30193 -10.17715 -10.08961 -9.61437 -9.35608 -9.19482 -8.43051 -7.31467 -6.04006 -4.05234 2.94230 2.97947 3.33594 3.38194 3.40700 3.79566 4.18045 4.42828 4.81435 4.90680 5.10406 5.20374 5.26029 5.28828 5.32487 5.33825 5.45036 5.47568 5.49206 5.58310 5.62923 5.71145 5.74106 5.79145 5.91005 6.09612 6.17509 6.24349 6.29960 6.42452 6.48871 6.58673 6.71023 6.74027 7.22689 7.31933 7.37259 7.73444 7.78255 8.03887 8.11937 8.49119 9.01543 9.59074 11.06485 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.006561 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.133243 B = 4266.303328 C = 5842.811866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.093 3.907 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.109 4.109 7 C -0.159 4.159 8 C 0.087 3.913 9 H 0.070 0.930 10 N -0.526 5.526 11 C 0.191 3.809 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.064 3.936 21 C -0.030 4.030 22 C 0.218 3.782 23 N -0.456 5.456 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.077 0.923 34 H -0.003 1.003 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 2.861 -0.645 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.035 3.965 4 H 0.074 0.926 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.198 4.198 8 C -0.023 4.023 9 H 0.088 0.912 10 N -0.249 5.249 11 C 0.067 3.933 12 C -0.550 4.550 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.065 4.065 21 C -0.071 4.071 22 C -0.099 4.099 23 N -0.134 5.134 24 C -0.145 4.145 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.015 0.985 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.307 3.919 -0.035 14.835 hybrid contribution 0.626 -0.067 -0.491 0.799 sum -13.681 3.852 -0.526 14.223 Atomic orbital electron populations 1.22732 0.81917 1.02304 0.99529 1.87958 1.18888 1.28346 1.95013 1.22162 0.95316 0.83747 0.95284 0.92647 1.22033 1.00777 0.97619 0.97372 1.21399 0.96963 0.96028 1.00391 1.22314 0.97251 1.02078 0.98136 1.21621 0.93037 0.95773 0.91825 0.91152 1.62284 1.03281 1.10526 1.48813 1.19795 0.89309 0.92222 0.91988 1.21140 1.00083 1.32426 1.01395 0.91891 1.24953 0.98614 0.95765 0.95052 1.69937 1.32406 1.35090 1.16151 0.86615 0.82526 0.78187 0.80408 1.20140 1.21428 1.20356 1.21907 0.98870 0.89468 0.96284 1.19484 1.00130 0.83676 1.03765 1.29406 0.93038 0.94904 0.92578 1.81199 1.09530 1.12945 1.09702 1.21594 0.93938 0.97730 1.01187 0.90024 0.94304 0.94483 0.92575 0.90904 0.92465 0.92147 0.92069 0.90409 0.98543 0.94260 0.92865 0.88730 0.94911 0.88118 0.86663 0.90080 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.38 10.35 -35.23 -0.36 -5.75 16 3 C 0.09 1.21 2.61 -26.73 -0.07 1.14 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.14 -1.74 5.54 -26.73 -0.15 -1.89 16 6 C -0.11 -1.30 5.92 -26.74 -0.16 -1.46 16 7 C -0.16 -2.32 4.47 -26.73 -0.12 -2.44 16 8 C 0.09 1.28 2.07 -67.71 -0.14 1.14 16 9 H 0.07 0.87 6.09 -51.93 -0.32 0.55 16 10 N -0.53 -9.49 4.45 -228.10 -1.01 -10.51 16 11 C 0.19 4.46 3.67 -4.98 -0.02 4.44 16 12 C -0.51 -13.39 8.37 -34.44 -0.29 -13.67 16 13 H 0.06 1.62 7.18 -52.49 -0.38 1.24 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.06 1.04 4.64 -3.83 -0.02 1.02 16 21 C -0.03 -0.36 5.65 -29.52 -0.17 -0.53 16 22 C 0.22 3.10 15.44 -20.74 -0.32 2.78 16 23 N -0.46 -7.63 18.54 42.18 0.78 -6.85 16 24 C -0.11 -1.65 4.80 -26.74 -0.13 -1.78 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.34 8.09 -51.92 -0.42 -0.08 16 27 H 0.04 0.32 7.87 -51.93 -0.41 -0.08 16 28 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.89 6.58 -51.93 -0.34 0.54 16 33 H 0.08 1.37 6.55 -51.93 -0.34 1.03 16 34 H 0.00 -0.08 6.82 -51.93 -0.35 -0.43 16 35 H 0.04 1.00 6.08 -51.93 -0.32 0.68 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.76 6.65 -51.93 -0.35 1.41 16 38 H 0.03 0.53 6.40 -51.93 -0.33 0.20 16 39 H 0.10 0.99 6.37 -51.93 -0.33 0.66 16 40 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.50 6.36 -51.93 -0.33 1.17 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -29.61 330.78 -7.17 -36.78 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.70 Total: -1.44 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.58 Total: -8.36 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.50 Total: -42.30 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.36 Total: -5.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.61 -7.17 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds