Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00074 * 2 1 4 4 H 1.09000 * 109.47021 * 30.00084 * 3 2 1 5 5 C 1.53000 * 109.47129 * 270.00363 * 3 2 1 6 6 C 1.52992 * 109.46960 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47526 * 59.99501 * 6 5 3 8 8 C 1.53000 * 109.47408 * 300.00225 * 7 6 5 9 9 H 1.09000 * 109.46941 * 299.99811 * 8 7 6 10 10 N 1.46903 * 109.46980 * 179.97438 * 8 7 6 11 11 C 1.46895 * 110.99739 * 306.04206 * 10 8 7 12 12 C 1.50702 * 109.46770 * 190.00200 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.46893 * 111.00134 * 69.99837 * 10 8 7 21 21 C 1.53003 * 109.47188 * 66.04489 * 20 10 8 22 22 C 1.47198 * 109.47313 * 180.02562 * 21 20 10 23 23 N 8.88478 * 119.44215 * 23.06726 * 2 1 3 24 24 C 1.52992 * 109.46960 * 59.99429 * 8 7 6 25 25 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47242 * 300.00086 * 1 2 3 27 27 H 1.09001 * 109.47629 * 59.99532 * 1 2 3 28 28 H 1.08996 * 109.47307 * 59.99555 * 5 3 2 29 29 H 1.09000 * 109.46941 * 299.99770 * 5 3 2 30 30 H 1.09000 * 109.46981 * 299.99593 * 6 5 3 31 31 H 1.09004 * 109.47209 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.47279 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46915 * 60.00051 * 7 6 5 34 34 H 1.09004 * 109.47258 * 70.00524 * 11 10 8 35 35 H 1.08994 * 109.47601 * 310.00116 * 11 10 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47044 * 186.03970 * 20 10 8 38 38 H 1.09000 * 109.47653 * 306.04351 * 20 10 8 39 39 H 1.09006 * 109.46896 * 299.99588 * 21 20 10 40 40 H 1.09005 * 109.47248 * 59.99726 * 21 20 10 41 41 H 1.09000 * 109.46981 * 60.00407 * 24 8 7 42 42 H 1.09005 * 109.47177 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1892 3.1261 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2351 10 7 5.2769 2.6186 1.4132 11 6 6.2458 1.8035 0.6684 12 6 7.4713 1.5801 1.5165 13 1 7.5249 2.0011 2.5096 14 6 8.5217 0.8329 1.0269 15 7 8.4563 0.3200 -0.1823 16 14 10.0375 0.5496 2.0811 17 1 9.6478 -0.1542 3.3294 18 1 11.0150 -0.2784 1.3300 19 1 10.6550 1.8564 2.4218 20 6 5.7951 3.9738 1.6425 21 6 4.8812 4.7099 2.6243 22 6 5.4000 6.0682 2.8536 23 7 5.7962 7.1187 3.0316 24 6 3.3589 1.2628 0.7211 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.2568 1.8015 -1.9563 29 1 2.8828 1.0776 -1.9563 30 1 2.1755 3.8630 -0.9285 31 1 2.9886 3.5007 -2.4701 32 1 4.6331 4.1216 -0.7218 33 1 4.8541 2.4320 -1.2354 34 1 6.5279 2.3216 -0.2483 35 1 5.7965 0.8423 0.4189 36 1 9.1954 -0.2054 -0.5269 37 1 6.8007 3.9128 2.0583 38 1 5.8249 4.5162 0.6975 39 1 3.8754 4.7710 2.2085 40 1 4.8513 4.1676 3.5694 41 1 4.0238 0.5686 0.2071 42 1 3.2116 0.9306 1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172942363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = -50.179003 kcal Electronic energy + Delta-G solvation = -20979.828438 eV Core-core repulsion = 17958.667495 eV Total energy + Delta-G solvation = -3021.160942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72748 -38.78867 -37.56846 -36.04173 -34.63561 -32.40991 -31.14886 -30.23242 -27.91573 -27.22875 -24.88406 -24.08069 -23.25168 -21.57577 -20.14053 -18.47840 -18.36875 -17.46615 -16.62906 -16.57565 -16.29014 -15.95964 -15.68908 -15.13089 -15.10351 -14.88350 -14.59831 -14.11093 -14.04288 -13.92375 -13.40378 -13.37930 -13.14639 -12.85561 -12.74478 -12.65219 -12.54485 -12.36303 -12.22005 -11.84401 -11.73704 -11.66331 -11.48980 -11.32853 -11.10807 -10.98990 -10.52477 -10.31914 -8.85157 -8.13706 -6.21560 1.43854 1.45472 1.52737 1.78663 1.86479 2.43874 2.80820 3.07415 3.20172 3.60712 3.84294 4.00568 4.13820 4.19494 4.29696 4.32002 4.37053 4.46812 4.54950 4.60707 4.63613 4.68290 4.73296 4.83199 4.93556 5.01413 5.06846 5.12603 5.16506 5.23835 5.28545 5.33857 5.38521 5.46228 5.49195 5.61705 5.73101 6.16078 6.41997 6.44768 6.63507 6.76438 6.96542 7.47460 8.96515 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.006561 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.133243 B = 4266.303328 C = 5842.811866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.098 3.902 4 H 0.089 0.911 5 C -0.138 4.138 6 C -0.101 4.101 7 C -0.155 4.155 8 C 0.088 3.912 9 H 0.116 0.884 10 N -0.527 5.527 11 C 0.212 3.788 12 C -0.520 4.520 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.271 1.271 20 C 0.065 3.935 21 C -0.014 4.014 22 C 0.242 3.758 23 N -0.501 5.501 24 C -0.104 4.104 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.032 0.968 34 H -0.032 1.032 35 H 0.009 0.991 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.033 0.967 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 4.202 0.619 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.040 3.960 4 H 0.106 0.894 5 C -0.176 4.176 6 C -0.139 4.139 7 C -0.194 4.194 8 C -0.021 4.021 9 H 0.133 0.867 10 N -0.250 5.250 11 C 0.086 3.914 12 C -0.558 4.558 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.196 1.196 20 C -0.065 4.065 21 C -0.053 4.053 22 C -0.074 4.074 23 N -0.180 5.180 24 C -0.142 4.142 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.051 0.949 34 H -0.015 1.015 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.052 0.948 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.670 5.274 1.243 17.528 hybrid contribution 1.303 -0.530 -0.912 1.676 sum -15.367 4.744 0.331 16.086 Atomic orbital electron populations 1.22961 0.79696 1.03480 1.00978 1.87924 1.21417 1.29037 1.95204 1.22111 0.94185 0.84279 0.95380 0.89359 1.22013 1.01247 0.97220 0.97110 1.21370 0.95421 0.96331 1.00822 1.22234 0.98398 1.00818 0.97955 1.21789 0.91710 0.96418 0.92168 0.86675 1.62141 1.03383 1.11195 1.48271 1.19309 0.89603 0.91561 0.90932 1.21574 1.01013 1.31547 1.01688 0.91499 1.25807 1.01773 0.95811 0.96156 1.70081 1.33303 1.36240 1.17953 0.85604 0.78932 0.78233 0.78858 1.19281 1.21455 1.19596 1.21829 0.98656 0.88752 0.97248 1.19464 1.00376 0.81888 1.03611 1.29633 0.91807 0.94780 0.91215 1.81234 1.10861 1.14577 1.11287 1.21534 0.94940 0.97047 1.00660 0.89216 0.92667 0.93063 0.90172 0.94084 0.89121 0.91519 0.91730 0.94925 1.01469 0.97271 0.93046 0.91662 0.95139 0.84384 0.84698 0.94780 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.42 -11.19 10.35 -148.98 -1.54 -12.73 16 3 C 0.10 2.37 2.61 30.59 0.08 2.44 16 4 H 0.09 1.58 7.79 -2.39 -0.02 1.56 16 5 C -0.14 -3.21 5.54 30.59 0.17 -3.04 16 6 C -0.10 -2.15 5.92 30.59 0.18 -1.97 16 7 C -0.15 -4.47 4.47 30.59 0.14 -4.33 16 8 C 0.09 2.46 2.07 44.91 0.09 2.56 16 9 H 0.12 2.27 6.09 -2.39 -0.01 2.26 16 10 N -0.53 -18.94 4.45 -875.56 -3.89 -22.83 16 11 C 0.21 10.39 3.67 85.56 0.31 10.71 16 12 C -0.52 -27.99 8.37 25.60 0.21 -27.78 16 13 H 0.07 3.47 7.18 -2.91 -0.02 3.45 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 16 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 C 0.06 2.02 4.64 86.31 0.40 2.42 16 21 C -0.01 -0.28 5.65 28.79 0.16 -0.11 16 22 C 0.24 6.26 15.44 89.43 1.38 7.64 16 23 N -0.50 -15.97 18.54 20.01 0.37 -15.60 16 24 C -0.10 -3.20 4.80 30.59 0.15 -3.05 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 0.77 8.09 -2.38 -0.02 0.75 16 27 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 28 H 0.08 1.50 7.87 -2.39 -0.02 1.48 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.80 6.58 -2.39 -0.02 1.78 16 33 H 0.03 1.22 6.55 -2.39 -0.02 1.21 16 34 H -0.03 -1.75 6.82 -2.38 -0.02 -1.77 16 35 H 0.01 0.51 6.08 -2.39 -0.01 0.49 16 36 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 37 H 0.06 2.42 6.65 -2.39 -0.02 2.41 16 38 H 0.03 0.97 6.40 -2.39 -0.02 0.95 16 39 H 0.14 1.90 6.37 -2.38 -0.02 1.89 16 40 H 0.14 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.03 1.35 6.36 -2.39 -0.02 1.34 16 42 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -68.78 330.78 3.21 -65.57 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.00 Total: 7.43 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.97 Total: -12.27 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -3.24 Total: -94.03 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.54 Total: -12.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.78 3.21 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds