Wall clock time and date at job start Mon Mar 30 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00292 * 2 1 4 4 H 1.09007 * 109.47144 * 329.99715 * 3 2 1 5 5 C 1.52991 * 109.47636 * 89.99543 * 3 2 1 6 6 C 1.53006 * 109.46966 * 60.00080 * 5 3 2 7 7 C 1.53001 * 109.47168 * 60.00362 * 6 5 3 8 8 C 1.53001 * 109.46946 * 300.00088 * 7 6 5 9 9 H 1.09007 * 109.47110 * 300.00436 * 8 7 6 10 10 N 1.46896 * 109.47450 * 180.02562 * 8 7 6 11 11 C 1.46906 * 110.99634 * 293.79929 * 10 8 7 12 12 C 1.50702 * 109.47003 * 169.99667 * 11 10 8 13 13 H 1.07997 * 119.99999 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99992 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00166 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47255 * 59.99987 * 16 14 12 18 18 H 1.48503 * 109.46895 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46957 * 299.99903 * 16 14 12 20 20 C 1.46900 * 111.00292 * 169.84899 * 10 8 7 21 21 C 1.52997 * 109.46863 * 287.86019 * 20 10 8 22 22 C 1.47208 * 109.46665 * 183.99802 * 21 20 10 23 23 N 6.40184 * 126.39859 * 232.64011 * 2 1 3 24 24 C 1.52999 * 109.47364 * 59.99729 * 8 7 6 25 25 H 1.09003 * 109.46756 * 300.00733 * 1 2 3 26 26 H 1.08998 * 109.46567 * 60.00579 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47684 * 300.00148 * 5 3 2 29 29 H 1.09004 * 109.47511 * 180.02562 * 5 3 2 30 30 H 1.08992 * 109.47052 * 299.99913 * 6 5 3 31 31 H 1.09004 * 109.47056 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.47354 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47399 * 59.99576 * 7 6 5 34 34 H 1.08996 * 109.47572 * 290.00246 * 11 10 8 35 35 H 1.09004 * 109.46858 * 50.00360 * 11 10 8 36 36 H 0.96997 * 120.00148 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47027 * 47.86162 * 20 10 8 38 38 H 1.09001 * 109.46792 * 167.85860 * 20 10 8 39 39 H 1.08999 * 109.46873 * 303.99365 * 21 20 10 40 40 H 1.08994 * 109.47685 * 63.99583 * 21 20 10 41 41 H 1.09004 * 109.46826 * 59.99994 * 24 8 7 42 42 H 1.09004 * 109.47581 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.1515 0.7974 2.1638 7 6 4.5002 0.7551 1.4426 8 6 4.2928 0.2891 0.0001 9 1 3.8493 -0.7067 0.0001 10 7 5.5877 0.2479 -0.6922 11 6 6.1480 1.5977 -0.8415 12 6 7.5712 1.4999 -1.3274 13 1 8.0149 0.5320 -1.5077 14 6 8.3067 2.6462 -1.5417 15 7 7.7665 3.8250 -1.3217 16 14 10.0706 2.5251 -2.1447 17 1 10.0986 1.8303 -3.4568 18 1 10.6370 3.8895 -2.2954 19 1 10.8783 1.7591 -1.1616 20 6 5.4670 -0.4190 -1.9955 21 6 5.2714 -1.9215 -1.7833 22 6 5.2464 -2.6021 -3.0884 23 7 5.2279 -3.1269 -4.0957 24 6 3.3590 1.2631 -0.7213 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.2569 1.8016 1.9563 29 1 2.6607 2.7674 1.4423 30 1 2.7081 -0.1983 2.1638 31 1 3.2996 1.1296 3.1913 32 1 5.1653 0.0609 1.9562 33 1 4.9436 1.7509 1.4425 34 1 5.5553 2.1594 -1.5635 35 1 6.1271 2.1083 0.1214 36 1 8.2839 4.6314 -1.4728 37 1 4.6100 -0.0134 -2.5332 38 1 6.3737 -0.2489 -2.5760 39 1 6.0934 -2.3139 -1.1846 40 1 4.3287 -2.0956 -1.2647 41 1 3.8024 2.2589 -0.7213 42 1 3.2109 0.9309 -1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172942364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:15 Heat of formation + Delta-G solvation = -30.414019 kcal Electronic energy + Delta-G solvation = -21219.694803 eV Core-core repulsion = 18199.390935 eV Total energy + Delta-G solvation = -3020.303868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58946 -37.43301 -36.26534 -34.64048 -32.67208 -30.99997 -30.03947 -28.80975 -26.50210 -26.15166 -23.38490 -22.62653 -22.03771 -20.22202 -18.66248 -17.16423 -16.62010 -16.08801 -15.62656 -15.19629 -14.92359 -14.55634 -14.38606 -14.31421 -13.61040 -13.31116 -13.12034 -12.70083 -12.56309 -12.42654 -12.21231 -11.92601 -11.82375 -11.65395 -11.45003 -11.22648 -11.11590 -10.94285 -10.72989 -10.59392 -10.39044 -10.22665 -10.11406 -9.85704 -9.51360 -9.35518 -9.15287 -8.42859 -7.25130 -6.04275 -4.04988 3.04086 3.08225 3.33551 3.37821 3.40888 3.88154 4.25728 4.43759 4.84506 4.97007 5.04411 5.23735 5.29459 5.31560 5.34081 5.46012 5.50170 5.57885 5.60137 5.60580 5.73540 5.82900 5.86519 5.91578 6.05341 6.14101 6.26311 6.29528 6.39375 6.46914 6.53011 6.65929 6.77395 6.87378 7.27421 7.32325 7.34858 7.78339 7.85830 8.08215 8.16364 8.53315 9.02360 9.59411 11.06257 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.006493 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.645804 B = 4311.349504 C = 5672.035740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.095 3.905 4 H 0.052 0.948 5 C -0.140 4.140 6 C -0.110 4.110 7 C -0.110 4.110 8 C 0.090 3.910 9 H 0.078 0.922 10 N -0.529 5.529 11 C 0.191 3.809 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.064 3.936 21 C -0.028 4.028 22 C 0.221 3.779 23 N -0.460 5.460 24 C -0.151 4.151 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.068 0.932 34 H -0.005 1.005 35 H 0.038 0.962 36 H 0.261 0.739 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 -5.016 6.168 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.036 3.964 4 H 0.071 0.929 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.019 4.019 9 H 0.096 0.904 10 N -0.251 5.251 11 C 0.067 3.933 12 C -0.548 4.548 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.066 4.066 21 C -0.069 4.069 22 C -0.097 4.097 23 N -0.138 5.138 24 C -0.190 4.190 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.012 0.988 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.219 -6.042 4.942 14.499 hybrid contribution 0.132 1.119 -0.458 1.216 sum -12.087 -4.922 4.484 13.800 Atomic orbital electron populations 1.22722 0.82161 1.02196 0.99482 1.87932 1.18591 1.28215 1.95002 1.22118 0.94880 0.83959 0.95405 0.92943 1.22013 0.99637 1.00041 0.96073 1.21398 0.95771 0.99486 0.98126 1.21567 0.95946 1.02498 0.94765 1.21618 0.88742 0.97914 0.93646 0.90400 1.62284 1.21292 1.23365 1.18195 1.19774 0.94092 0.82625 0.96856 1.21161 0.97172 0.92657 1.43851 0.91889 1.24947 0.98333 0.95339 0.95767 1.69933 1.37105 0.97378 1.49374 0.86626 0.84883 0.76953 0.79349 1.20350 1.21445 1.20140 1.21892 1.02143 0.89705 0.92880 1.19446 1.05360 0.95854 0.86223 1.29420 0.92300 0.92997 0.94974 1.81149 1.09944 1.10624 1.12038 1.22387 0.94165 1.02837 0.99570 0.94482 0.94514 0.90089 0.92634 0.91009 0.91684 0.92569 0.91394 0.91297 0.98763 0.94387 0.92915 0.94992 0.88940 0.86732 0.87969 0.89600 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.84 9.00 -35.23 -0.32 -5.16 16 3 C 0.09 1.23 2.92 -26.73 -0.08 1.15 16 4 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.14 -1.70 5.63 -26.73 -0.15 -1.85 16 6 C -0.11 -1.38 5.78 -26.73 -0.15 -1.54 16 7 C -0.11 -1.67 5.15 -26.73 -0.14 -1.81 16 8 C 0.09 1.41 1.95 -67.71 -0.13 1.28 16 9 H 0.08 1.15 6.02 -51.92 -0.31 0.84 16 10 N -0.53 -9.83 4.40 -228.08 -1.00 -10.83 16 11 C 0.19 4.46 3.66 -4.97 -0.02 4.44 16 12 C -0.51 -13.36 8.28 -34.44 -0.29 -13.65 16 13 H 0.06 1.63 7.26 -52.49 -0.38 1.25 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.06 1.08 4.67 -3.83 -0.02 1.07 16 21 C -0.03 -0.38 5.69 -29.52 -0.17 -0.54 16 22 C 0.22 3.37 15.43 -20.76 -0.32 3.05 16 23 N -0.46 -8.11 18.54 42.15 0.78 -7.32 16 24 C -0.15 -2.32 4.22 -26.73 -0.11 -2.44 16 25 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 26 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.20 6.37 -51.93 -0.33 0.86 16 34 H -0.01 -0.14 6.83 -51.93 -0.35 -0.49 16 35 H 0.04 0.95 6.09 -51.93 -0.32 0.64 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.03 0.54 6.25 -51.93 -0.32 0.22 16 38 H 0.09 1.80 6.59 -51.93 -0.34 1.46 16 39 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.10 1.18 6.75 -51.93 -0.35 0.83 16 41 H 0.09 1.50 6.56 -51.93 -0.34 1.16 16 42 H 0.06 1.02 6.50 -51.93 -0.34 0.68 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -29.08 329.26 -7.12 -36.20 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.68 Total: -1.11 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.58 Total: -7.98 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.51 Total: -42.98 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.32 Total: -5.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.08 -7.12 -36.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.784 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds