Wall clock time and date at job start Mon Mar 30 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00292 * 2 1 4 4 H 1.09007 * 109.47144 * 329.99715 * 3 2 1 5 5 C 1.52991 * 109.47636 * 89.99543 * 3 2 1 6 6 C 1.53006 * 109.46966 * 60.00080 * 5 3 2 7 7 C 1.53001 * 109.47168 * 60.00362 * 6 5 3 8 8 C 1.53001 * 109.46946 * 300.00088 * 7 6 5 9 9 H 1.09007 * 109.47110 * 300.00436 * 8 7 6 10 10 N 1.46896 * 109.47450 * 180.02562 * 8 7 6 11 11 C 1.46906 * 110.99634 * 293.79929 * 10 8 7 12 12 C 1.50702 * 109.47003 * 169.99667 * 11 10 8 13 13 H 1.07997 * 119.99999 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99992 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00166 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47255 * 59.99987 * 16 14 12 18 18 H 1.48503 * 109.46895 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46957 * 299.99903 * 16 14 12 20 20 C 1.46900 * 111.00292 * 169.84899 * 10 8 7 21 21 C 1.52997 * 109.46863 * 287.86019 * 20 10 8 22 22 C 1.47208 * 109.46665 * 183.99802 * 21 20 10 23 23 N 6.40184 * 126.39859 * 232.64011 * 2 1 3 24 24 C 1.52999 * 109.47364 * 59.99729 * 8 7 6 25 25 H 1.09003 * 109.46756 * 300.00733 * 1 2 3 26 26 H 1.08998 * 109.46567 * 60.00579 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47684 * 300.00148 * 5 3 2 29 29 H 1.09004 * 109.47511 * 180.02562 * 5 3 2 30 30 H 1.08992 * 109.47052 * 299.99913 * 6 5 3 31 31 H 1.09004 * 109.47056 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.47354 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47399 * 59.99576 * 7 6 5 34 34 H 1.08996 * 109.47572 * 290.00246 * 11 10 8 35 35 H 1.09004 * 109.46858 * 50.00360 * 11 10 8 36 36 H 0.96997 * 120.00148 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47027 * 47.86162 * 20 10 8 38 38 H 1.09001 * 109.46792 * 167.85860 * 20 10 8 39 39 H 1.08999 * 109.46873 * 303.99365 * 21 20 10 40 40 H 1.08994 * 109.47685 * 63.99583 * 21 20 10 41 41 H 1.09004 * 109.46826 * 59.99994 * 24 8 7 42 42 H 1.09004 * 109.47581 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.1515 0.7974 2.1638 7 6 4.5002 0.7551 1.4426 8 6 4.2928 0.2891 0.0001 9 1 3.8493 -0.7067 0.0001 10 7 5.5877 0.2479 -0.6922 11 6 6.1480 1.5977 -0.8415 12 6 7.5712 1.4999 -1.3274 13 1 8.0149 0.5320 -1.5077 14 6 8.3067 2.6462 -1.5417 15 7 7.7665 3.8250 -1.3217 16 14 10.0706 2.5251 -2.1447 17 1 10.0986 1.8303 -3.4568 18 1 10.6370 3.8895 -2.2954 19 1 10.8783 1.7591 -1.1616 20 6 5.4670 -0.4190 -1.9955 21 6 5.2714 -1.9215 -1.7833 22 6 5.2464 -2.6021 -3.0884 23 7 5.2279 -3.1269 -4.0957 24 6 3.3590 1.2631 -0.7213 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.2569 1.8016 1.9563 29 1 2.6607 2.7674 1.4423 30 1 2.7081 -0.1983 2.1638 31 1 3.2996 1.1296 3.1913 32 1 5.1653 0.0609 1.9562 33 1 4.9436 1.7509 1.4425 34 1 5.5553 2.1594 -1.5635 35 1 6.1271 2.1083 0.1214 36 1 8.2839 4.6314 -1.4728 37 1 4.6100 -0.0134 -2.5332 38 1 6.3737 -0.2489 -2.5760 39 1 6.0934 -2.3139 -1.1846 40 1 4.3287 -2.0956 -1.2647 41 1 3.8024 2.2589 -0.7213 42 1 3.2109 0.9309 -1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172942364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:15 Heat of formation + Delta-G solvation = -48.207797 kcal Electronic energy + Delta-G solvation = -21220.466399 eV Core-core repulsion = 18199.390935 eV Total energy + Delta-G solvation = -3021.075465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78666 -38.64859 -37.53687 -35.86751 -34.62817 -32.31743 -31.17829 -30.28852 -27.93932 -27.20406 -24.91640 -24.20119 -23.18465 -21.42219 -20.01498 -18.52546 -18.34940 -17.27340 -16.72721 -16.54815 -16.15434 -16.02894 -15.74638 -15.47795 -15.00920 -14.66419 -14.29227 -14.12583 -13.91818 -13.83766 -13.50627 -13.28384 -13.12762 -12.88039 -12.79867 -12.71052 -12.56776 -12.31041 -12.25120 -12.02378 -11.79180 -11.62009 -11.45542 -11.12264 -11.05902 -10.87466 -10.48717 -10.30374 -8.83164 -8.12773 -6.19806 1.44796 1.45761 1.53127 1.77661 1.85279 2.44882 2.95421 2.99684 3.21034 3.58973 3.88537 3.98082 4.03175 4.27527 4.32155 4.35875 4.44511 4.54061 4.60211 4.64599 4.66908 4.74864 4.76932 4.88287 4.91578 5.02192 5.08516 5.09744 5.19250 5.26848 5.28873 5.37699 5.42546 5.52063 5.55540 5.68877 5.75535 6.18313 6.39386 6.46174 6.62368 6.79294 6.97840 7.48978 8.97316 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.006493 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.645804 B = 4311.349504 C = 5672.035740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.101 3.899 4 H 0.061 0.939 5 C -0.139 4.139 6 C -0.102 4.102 7 C -0.108 4.108 8 C 0.092 3.908 9 H 0.100 0.900 10 N -0.529 5.529 11 C 0.211 3.789 12 C -0.519 4.519 13 H 0.064 0.936 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.268 1.268 20 C 0.065 3.935 21 C -0.012 4.012 22 C 0.243 3.757 23 N -0.500 5.500 24 C -0.147 4.147 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.037 0.963 34 H -0.033 1.033 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.055 0.945 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 -6.583 7.122 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.043 3.957 4 H 0.079 0.921 5 C -0.176 4.176 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.017 4.017 9 H 0.118 0.882 10 N -0.251 5.251 11 C 0.085 3.915 12 C -0.558 4.558 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.574 5.574 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.065 4.065 21 C -0.052 4.052 22 C -0.074 4.074 23 N -0.179 5.179 24 C -0.186 4.186 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.056 0.944 34 H -0.015 1.015 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.256 -7.633 5.899 16.395 hybrid contribution 0.383 1.602 -0.746 1.808 sum -12.874 -6.031 5.154 15.121 Atomic orbital electron populations 1.22928 0.80313 1.03563 1.00323 1.87883 1.20554 1.27556 1.95122 1.21951 0.93472 0.84689 0.95614 0.92092 1.22005 1.00620 0.99307 0.95698 1.21342 0.93998 1.00231 0.98380 1.21536 0.97650 1.00583 0.94807 1.21718 0.87310 0.99076 0.93549 0.88234 1.62199 1.23365 1.20488 1.19057 1.19339 0.92892 0.84714 0.94552 1.21558 0.98483 0.92628 1.43088 0.91751 1.25745 1.02249 0.95114 0.96148 1.70059 1.38584 0.97991 1.50771 0.85647 0.80350 0.76920 0.78963 1.19933 1.21340 1.19265 1.21813 1.00702 0.92200 0.91794 1.19396 1.07595 0.92567 0.85614 1.29612 0.90954 0.92088 0.94735 1.81177 1.11536 1.12009 1.13152 1.22260 0.95826 1.00887 0.99607 0.93215 0.94116 0.88511 0.90285 0.92072 0.90623 0.91292 0.91380 0.94379 1.01541 0.96596 0.93015 0.95213 0.91767 0.84927 0.85079 0.92677 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.82 113.37 1.23 1.62 16 2 O -0.39 -8.89 9.00 -148.98 -1.34 -10.23 16 3 C 0.10 2.46 2.92 30.59 0.09 2.55 16 4 H 0.06 1.38 7.79 -2.38 -0.02 1.36 16 5 C -0.14 -3.11 5.63 30.59 0.17 -2.94 16 6 C -0.10 -2.34 5.78 30.60 0.18 -2.17 16 7 C -0.11 -3.22 5.15 30.59 0.16 -3.06 16 8 C 0.09 2.81 1.95 44.92 0.09 2.90 16 9 H 0.10 2.67 6.02 -2.38 -0.01 2.65 16 10 N -0.53 -19.68 4.40 -875.51 -3.85 -23.53 16 11 C 0.21 10.24 3.66 85.56 0.31 10.55 16 12 C -0.52 -27.78 8.28 25.60 0.21 -27.56 16 13 H 0.06 3.35 7.26 -2.91 -0.02 3.33 16 14 C 0.01 0.29 5.46 84.65 0.46 0.76 16 15 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 16 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C 0.06 2.18 4.67 86.30 0.40 2.58 16 21 C -0.01 -0.28 5.69 28.79 0.16 -0.12 16 22 C 0.24 7.00 15.43 89.44 1.38 8.38 16 23 N -0.50 -17.12 18.54 20.01 0.37 -16.75 16 24 C -0.15 -4.54 4.22 30.60 0.13 -4.42 16 25 H 0.05 0.67 7.87 -2.39 -0.02 0.66 16 26 H 0.04 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.63 7.68 -2.39 -0.02 1.61 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.37 6.37 -2.39 -0.02 1.35 16 34 H -0.03 -1.77 6.83 -2.39 -0.02 -1.78 16 35 H 0.02 0.85 6.09 -2.38 -0.01 0.83 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.03 1.01 6.25 -2.39 -0.01 1.00 16 38 H 0.06 2.53 6.59 -2.39 -0.02 2.51 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.13 2.53 6.75 -2.39 -0.02 2.51 16 41 H 0.05 2.04 6.56 -2.39 -0.02 2.02 16 42 H 0.06 1.81 6.50 -2.39 -0.02 1.80 16 Total: -1.00 -63.89 329.26 3.46 -60.42 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.00 Total: 9.69 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.97 Total: -10.92 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -3.20 Total: -94.64 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.34 Total: -10.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.89 3.46 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172942364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.216 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds