Wall clock time and date at job start Mon Mar 30 2020 01:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47417 * 2 1 4 4 H 1.09002 * 110.53685 * 52.38271 * 3 2 1 5 5 C 1.54272 * 110.48073 * 289.77446 * 3 2 1 6 6 C 1.54087 * 106.61722 * 217.59931 * 5 3 2 7 7 C 1.54259 * 106.49376 * 0.17554 * 6 5 3 8 8 H 1.09004 * 110.48909 * 264.70323 * 7 6 5 9 9 N 1.46905 * 110.48769 * 142.20136 * 7 6 5 10 10 C 1.46957 * 110.99969 * 63.23575 * 9 7 6 11 11 C 1.53054 * 109.35811 * 183.19161 * 10 9 7 12 12 N 1.46955 * 109.36808 * 301.60033 * 11 10 9 13 13 C 1.46901 * 110.99835 * 183.19253 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99883 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46958 * 110.87954 * 59.32271 * 12 11 10 23 23 C 1.46955 * 111.00275 * 187.04049 * 9 7 6 24 24 C 1.54886 * 104.31847 * 23.45213 * 7 6 5 25 25 H 1.08996 * 109.47035 * 59.99963 * 1 2 3 26 26 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46812 * 300.00285 * 1 2 3 28 28 H 1.08997 * 109.47327 * 239.99622 * 2 1 3 29 29 H 1.09002 * 109.47468 * 119.99980 * 2 1 3 30 30 H 1.08997 * 110.03439 * 336.99460 * 5 3 2 31 31 H 1.09006 * 110.02641 * 98.37753 * 5 3 2 32 32 H 1.08995 * 110.15787 * 240.88223 * 6 5 3 33 33 H 1.08998 * 110.00314 * 119.38895 * 6 5 3 34 34 H 1.08997 * 109.48667 * 63.22986 * 10 9 7 35 35 H 1.09002 * 109.50904 * 303.16900 * 10 9 7 36 36 H 1.09002 * 109.48344 * 181.63089 * 11 10 9 37 37 H 1.08998 * 109.49062 * 61.57491 * 11 10 9 38 38 H 1.09002 * 109.47401 * 49.99911 * 13 12 11 39 39 H 1.09001 * 109.46874 * 289.99924 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.48699 * 60.64519 * 22 12 11 42 42 H 1.08993 * 109.48441 * 180.71371 * 22 12 11 43 43 H 1.08997 * 109.48797 * 296.78085 * 23 9 7 44 44 H 1.09001 * 109.48877 * 56.82001 * 23 9 7 45 45 H 1.08995 * 110.75475 * 80.43325 * 24 7 6 46 46 H 1.09001 * 110.76205 * 203.62464 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0108 0.8085 5 6 1.7591 2.1144 -1.3600 6 6 2.9740 3.0108 -1.6680 7 6 3.9505 2.8466 -0.4852 8 1 3.8015 3.6414 0.2457 9 7 5.3399 2.8427 -0.9623 10 6 5.6867 4.1281 -1.5846 11 6 7.1119 4.0558 -2.1379 12 7 8.0424 3.7339 -1.0470 13 6 9.4318 3.7300 -1.5242 14 6 10.3673 3.6418 -0.3460 15 1 9.9695 3.5930 0.6569 16 6 11.7310 3.6222 -0.5485 17 7 12.2153 3.6811 -1.7697 18 14 12.8905 3.5121 0.9119 19 1 12.6216 2.2603 1.6643 20 1 14.2950 3.5083 0.4296 21 1 12.6768 4.6808 1.8029 22 6 7.6956 2.4486 -0.4248 23 6 6.2705 2.5208 0.1286 24 6 3.5835 1.4717 0.1264 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6465 1.3562 -2.1349 31 1 0.8554 2.7208 -1.2971 32 1 2.6612 4.0515 -1.7523 33 1 3.4506 2.6876 -2.5935 34 1 5.6257 4.9210 -0.8392 35 1 4.9913 4.3385 -2.3972 36 1 7.3817 5.0175 -2.5742 37 1 7.1662 3.2811 -2.9027 38 1 9.6289 4.6488 -2.0766 39 1 9.5889 2.8721 -2.1780 40 1 13.1747 3.6677 -1.9122 41 1 7.7565 1.6556 -1.1701 42 1 8.3910 2.2386 0.3878 43 1 6.2160 3.2955 0.8934 44 1 6.0004 1.5593 0.5651 45 1 4.0335 0.6614 -0.4470 46 1 3.8893 1.4197 1.1714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173281571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:42 Heat of formation + Delta-G solvation = -14.312428 kcal Electronic energy + Delta-G solvation = -20954.885086 eV Core-core repulsion = 18071.112529 eV Total energy + Delta-G solvation = -2883.772556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.52996 -37.68602 -34.87979 -32.83783 -31.95801 -30.57428 -28.66659 -28.20678 -26.31658 -24.30209 -23.37684 -22.29483 -21.49915 -20.12208 -19.51254 -19.07291 -16.28446 -16.26965 -15.95039 -14.73790 -14.59187 -14.30790 -14.19593 -14.01297 -13.88524 -13.50625 -13.28272 -13.19358 -12.80974 -12.15097 -12.07425 -11.74436 -11.63242 -11.39466 -11.29836 -11.12992 -10.85547 -10.80698 -10.70265 -10.63925 -10.61326 -10.52134 -10.42199 -10.20410 -10.14823 -9.64665 -9.15251 -8.41245 -8.04547 -7.18004 -6.00252 -4.01648 3.34779 3.38645 3.41612 4.08360 4.42058 4.44322 4.54257 4.73102 4.98805 5.01785 5.06922 5.15746 5.35080 5.35723 5.39846 5.46129 5.48653 5.54391 5.63019 5.64684 5.73283 5.77464 5.80744 5.85171 5.89424 5.94649 5.99202 5.99923 6.03429 6.12881 6.17652 6.25724 6.30003 6.36400 6.49749 6.66498 6.74038 7.25774 7.37312 7.42158 7.44817 7.82816 8.12890 8.25332 8.59170 9.05726 9.62374 11.10653 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038639 B = 0.003532 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.491855 B = 7924.783560 C = 8394.768745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.117 4.117 7 C 0.079 3.921 8 H 0.041 0.959 9 N -0.532 5.532 10 C 0.061 3.939 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.507 4.507 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.068 3.932 23 C 0.058 3.942 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.029 0.971 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.028 0.972 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 -4.473 1.969 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.111 4.111 4 H 0.089 0.911 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.030 4.030 8 H 0.059 0.941 9 N -0.257 5.257 10 C -0.067 4.067 11 C -0.072 4.072 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.061 4.061 23 C -0.070 4.070 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.586 -4.458 1.857 22.119 hybrid contribution 0.780 0.043 0.681 1.037 sum -20.805 -4.414 2.539 21.420 Atomic orbital electron populations 1.21783 0.96109 1.01313 1.01730 1.21555 0.95581 0.96177 1.02045 1.21985 0.95643 0.95848 0.97606 0.91074 1.22199 0.97579 0.98545 0.96930 1.22212 0.95061 0.99138 0.99085 1.22457 0.88485 0.96679 0.95350 0.94099 1.62305 1.01311 1.31670 1.30410 1.22144 0.96731 0.89679 0.98177 1.22059 0.91383 1.00276 0.93507 1.62275 1.04907 1.30244 1.29016 1.19690 0.81749 0.96170 0.95496 1.21125 0.90392 1.49844 0.93241 0.92006 1.24991 0.98300 0.95496 0.95832 1.69951 1.13008 1.50933 1.19971 0.86565 0.79615 0.78640 0.82601 1.20263 1.21367 1.20208 1.21982 0.93727 0.91019 0.99344 1.22235 0.92749 0.99857 0.92169 1.22603 0.94570 0.97398 1.00336 0.92696 0.93032 0.92949 0.91828 0.92094 0.91713 0.92312 0.92364 0.90638 0.94578 0.91218 0.91176 0.95228 0.95295 0.99110 0.92888 0.95405 0.89703 0.94614 0.91093 0.90330 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.79 37.16 0.36 -0.71 16 2 C -0.12 -0.94 5.33 -26.73 -0.14 -1.08 16 3 C -0.09 -0.83 2.86 -88.95 -0.25 -1.08 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.11 -1.04 5.70 -25.50 -0.15 -1.18 16 6 C -0.12 -1.26 5.30 -25.51 -0.14 -1.39 16 7 C 0.08 0.98 2.57 -66.06 -0.17 0.81 16 8 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 9 N -0.53 -8.08 4.53 -224.51 -1.02 -9.10 16 10 C 0.06 0.96 5.44 -3.76 -0.02 0.94 16 11 C 0.06 1.08 5.61 -3.77 -0.02 1.06 16 12 N -0.54 -12.07 4.70 -235.91 -1.11 -13.18 16 13 C 0.19 5.19 4.72 -4.97 -0.02 5.16 16 14 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16 15 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 18 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 23 C 0.06 0.95 5.39 -3.77 -0.02 0.93 16 24 C -0.11 -1.21 4.55 -24.74 -0.11 -1.32 16 25 H 0.05 0.38 7.62 -51.93 -0.40 -0.02 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.54 7.95 -51.93 -0.41 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.96 7.03 -51.93 -0.37 0.59 16 36 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.83 6.79 -51.93 -0.35 1.47 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.04 6.80 -51.93 -0.35 0.68 16 45 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 46 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -29.61 346.92 -11.21 -40.82 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -8.93 Total: -4.46 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.09 Total: -9.79 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.39 Total: -48.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.61 -11.21 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173281571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.503 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds