Wall clock time and date at job start Mon Mar 30 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47417 * 2 1 4 4 H 1.09002 * 110.53685 * 52.38271 * 3 2 1 5 5 C 1.54272 * 110.48073 * 289.77446 * 3 2 1 6 6 C 1.54087 * 106.61722 * 217.59931 * 5 3 2 7 7 C 1.54259 * 106.49376 * 0.17554 * 6 5 3 8 8 H 1.09004 * 110.48909 * 264.70323 * 7 6 5 9 9 N 1.46905 * 110.48769 * 142.20136 * 7 6 5 10 10 C 1.46957 * 110.99969 * 63.23575 * 9 7 6 11 11 C 1.53054 * 109.35811 * 183.19161 * 10 9 7 12 12 N 1.46955 * 109.36808 * 301.60033 * 11 10 9 13 13 C 1.46901 * 110.99835 * 183.19253 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99883 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46958 * 110.87954 * 59.32271 * 12 11 10 23 23 C 1.46955 * 111.00275 * 187.04049 * 9 7 6 24 24 C 1.54886 * 104.31847 * 23.45213 * 7 6 5 25 25 H 1.08996 * 109.47035 * 59.99963 * 1 2 3 26 26 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46812 * 300.00285 * 1 2 3 28 28 H 1.08997 * 109.47327 * 239.99622 * 2 1 3 29 29 H 1.09002 * 109.47468 * 119.99980 * 2 1 3 30 30 H 1.08997 * 110.03439 * 336.99460 * 5 3 2 31 31 H 1.09006 * 110.02641 * 98.37753 * 5 3 2 32 32 H 1.08995 * 110.15787 * 240.88223 * 6 5 3 33 33 H 1.08998 * 110.00314 * 119.38895 * 6 5 3 34 34 H 1.08997 * 109.48667 * 63.22986 * 10 9 7 35 35 H 1.09002 * 109.50904 * 303.16900 * 10 9 7 36 36 H 1.09002 * 109.48344 * 181.63089 * 11 10 9 37 37 H 1.08998 * 109.49062 * 61.57491 * 11 10 9 38 38 H 1.09002 * 109.47401 * 49.99911 * 13 12 11 39 39 H 1.09001 * 109.46874 * 289.99924 * 13 12 11 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.48699 * 60.64519 * 22 12 11 42 42 H 1.08993 * 109.48441 * 180.71371 * 22 12 11 43 43 H 1.08997 * 109.48797 * 296.78085 * 23 9 7 44 44 H 1.09001 * 109.48877 * 56.82001 * 23 9 7 45 45 H 1.08995 * 110.75475 * 80.43325 * 24 7 6 46 46 H 1.09001 * 110.76205 * 203.62464 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0108 0.8085 5 6 1.7591 2.1144 -1.3600 6 6 2.9740 3.0108 -1.6680 7 6 3.9505 2.8466 -0.4852 8 1 3.8015 3.6414 0.2457 9 7 5.3399 2.8427 -0.9623 10 6 5.6867 4.1281 -1.5846 11 6 7.1119 4.0558 -2.1379 12 7 8.0424 3.7339 -1.0470 13 6 9.4318 3.7300 -1.5242 14 6 10.3673 3.6418 -0.3460 15 1 9.9695 3.5930 0.6569 16 6 11.7310 3.6222 -0.5485 17 7 12.2153 3.6811 -1.7697 18 14 12.8905 3.5121 0.9119 19 1 12.6216 2.2603 1.6643 20 1 14.2950 3.5083 0.4296 21 1 12.6768 4.6808 1.8029 22 6 7.6956 2.4486 -0.4248 23 6 6.2705 2.5208 0.1286 24 6 3.5835 1.4717 0.1264 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6465 1.3562 -2.1349 31 1 0.8554 2.7208 -1.2971 32 1 2.6612 4.0515 -1.7523 33 1 3.4506 2.6876 -2.5935 34 1 5.6257 4.9210 -0.8392 35 1 4.9913 4.3385 -2.3972 36 1 7.3817 5.0175 -2.5742 37 1 7.1662 3.2811 -2.9027 38 1 9.6289 4.6488 -2.0766 39 1 9.5889 2.8721 -2.1780 40 1 13.1747 3.6677 -1.9122 41 1 7.7565 1.6556 -1.1701 42 1 8.3910 2.2386 0.3878 43 1 6.2160 3.2955 0.8934 44 1 6.0004 1.5593 0.5651 45 1 4.0335 0.6614 -0.4470 46 1 3.8893 1.4197 1.1714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173281571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:41 Heat of formation + Delta-G solvation = -32.456240 kcal Electronic energy + Delta-G solvation = -20955.671861 eV Core-core repulsion = 18071.112529 eV Total energy + Delta-G solvation = -2884.559331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68134 -38.92832 -36.29355 -34.62226 -33.15586 -32.00909 -29.97873 -29.38788 -27.74593 -25.84231 -24.60654 -23.39912 -23.19610 -21.12014 -20.71094 -20.18801 -18.48227 -17.50209 -16.88216 -16.51092 -15.85960 -15.71733 -15.49631 -15.36420 -15.17722 -14.83031 -14.35760 -14.11353 -14.06095 -13.77350 -13.33814 -13.05319 -12.88057 -12.74203 -12.60833 -12.52575 -12.33510 -12.24307 -12.04898 -11.99643 -11.71817 -11.64280 -11.44157 -11.30454 -11.26786 -11.16733 -11.08458 -10.62586 -9.30213 -9.04358 -8.21819 -6.32709 1.40126 1.43855 1.51785 2.39379 2.91010 3.10115 3.28874 3.59027 3.76061 3.92451 4.06641 4.19408 4.24081 4.29463 4.37586 4.44065 4.46119 4.52597 4.58993 4.64238 4.69622 4.74345 4.77793 4.86050 4.89731 4.96242 4.99373 4.99558 5.08605 5.11699 5.18275 5.20046 5.24374 5.28202 5.29915 5.33072 5.40278 5.49486 5.62182 5.64710 6.00893 6.09662 6.20538 6.36357 6.60921 6.82833 7.37105 8.89418 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038639 B = 0.003532 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.491855 B = 7924.783560 C = 8394.768745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.086 4.086 4 H 0.077 0.923 5 C -0.110 4.110 6 C -0.114 4.114 7 C 0.077 3.923 8 H 0.041 0.959 9 N -0.539 5.539 10 C 0.072 3.928 11 C 0.055 3.945 12 N -0.546 5.546 13 C 0.210 3.790 14 C -0.526 4.526 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.070 3.930 23 C 0.071 3.929 24 C -0.110 4.110 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.003 0.997 39 H -0.041 1.041 40 H 0.265 0.735 41 H 0.014 0.986 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.598 -4.696 3.338 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.105 4.105 4 H 0.096 0.904 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.031 4.031 8 H 0.059 0.941 9 N -0.264 5.264 10 C -0.056 4.056 11 C -0.074 4.074 12 N -0.271 5.271 13 C 0.083 3.917 14 C -0.564 4.564 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.058 4.058 23 C -0.057 4.057 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.021 0.979 39 H -0.024 1.024 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.443 -4.684 3.230 24.124 hybrid contribution 1.316 0.108 0.196 1.335 sum -22.127 -4.576 3.426 22.853 Atomic orbital electron populations 1.21765 0.95150 1.01792 1.02034 1.21534 0.96385 0.95446 1.01858 1.21953 0.94089 0.96577 0.97831 0.90423 1.22176 0.97270 0.98435 0.96896 1.22197 0.95193 1.00108 0.97727 1.22575 0.86740 0.97596 0.96201 0.94113 1.62310 1.02694 1.31262 1.30139 1.22042 0.94723 0.89985 0.98891 1.22159 0.92822 0.99810 0.92601 1.62223 1.03325 1.31478 1.30051 1.19341 0.84571 0.93360 0.94398 1.21417 0.91239 1.50139 0.93583 0.91905 1.25954 1.00109 0.94699 0.98950 1.70087 1.13586 1.51541 1.22346 0.85402 0.77080 0.79188 0.78746 1.19068 1.20741 1.19283 1.21967 0.96114 0.89531 0.98234 1.22063 0.90508 1.00987 0.92125 1.22589 0.96060 0.96018 1.00088 0.92446 0.92544 0.92571 0.92300 0.92076 0.91531 0.90916 0.91489 0.91737 0.94822 0.88605 0.91186 0.96168 0.97885 1.02362 0.92612 0.96752 0.91410 0.94953 0.88936 0.91396 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.79 71.98 0.70 -1.04 16 2 C -0.11 -1.61 5.33 30.60 0.16 -1.44 16 3 C -0.09 -1.33 2.86 -9.71 -0.03 -1.36 16 4 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.11 -1.69 5.70 31.39 0.18 -1.51 16 6 C -0.11 -2.18 5.30 31.39 0.17 -2.02 16 7 C 0.08 1.74 2.57 45.99 0.12 1.86 16 8 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 9 N -0.54 -15.70 4.53 -864.21 -3.92 -19.62 16 10 C 0.07 2.18 5.44 86.31 0.47 2.65 16 11 C 0.05 2.11 5.61 86.31 0.48 2.59 16 12 N -0.55 -25.13 4.70 -900.29 -4.23 -29.36 16 13 C 0.21 11.73 4.72 85.56 0.40 12.14 16 14 C -0.53 -30.69 8.47 25.60 0.22 -30.47 16 15 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 18 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.07 2.90 5.43 86.31 0.47 3.36 16 23 C 0.07 2.28 5.39 86.31 0.47 2.75 16 24 C -0.11 -2.17 4.55 31.88 0.15 -2.02 16 25 H 0.06 0.64 7.62 -2.39 -0.02 0.62 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.02 7.71 -2.39 -0.02 1.00 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.39 7.87 -2.39 -0.02 1.38 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 2.44 7.03 -2.39 -0.02 2.42 16 36 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.00 0.18 8.03 -2.39 -0.02 0.16 16 39 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 2.57 6.80 -2.39 -0.02 2.55 16 45 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 46 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 Total: -1.00 -64.56 346.92 -0.52 -65.08 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.90 Total: 8.22 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.42 Total: -14.00 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -7.87 Total: -106.25 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.56 -0.52 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173281571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.629 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds