Wall clock time and date at job start Mon Mar 30 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 H 1.09002 * 110.81227 * 303.11799 * 3 2 1 5 5 C 1.54895 * 110.75547 * 66.45062 * 3 2 1 6 6 C 1.54265 * 104.31063 * 156.32431 * 5 3 2 7 7 C 1.53872 * 106.59969 * 336.32577 * 6 5 3 8 8 H 1.08997 * 110.03464 * 119.33410 * 7 6 5 9 9 N 1.46906 * 110.02622 * 240.71461 * 7 6 5 10 10 C 1.46950 * 111.00152 * 296.54080 * 9 7 6 11 11 C 1.53051 * 109.36669 * 176.81601 * 10 9 7 12 12 N 1.46955 * 109.36484 * 58.39809 * 11 10 9 13 13 C 1.46906 * 111.00252 * 176.81587 * 12 11 10 14 14 C 1.50702 * 109.46775 * 293.80138 * 13 12 11 15 15 H 1.08001 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00126 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00478 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99454 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47301 * 90.00159 * 18 16 14 20 20 H 1.48501 * 109.46914 * 209.99787 * 18 16 14 21 21 H 1.48494 * 109.47474 * 329.99728 * 18 16 14 22 22 C 1.46960 * 110.88158 * 300.68435 * 12 11 10 23 23 C 1.46965 * 110.99787 * 172.74185 * 9 7 6 24 24 C 1.54260 * 106.60099 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47518 * 300.00006 * 1 2 3 27 27 H 1.09000 * 109.46977 * 60.00526 * 1 2 3 28 28 H 1.08996 * 109.47681 * 239.99472 * 2 1 3 29 29 H 1.09010 * 109.46930 * 119.99610 * 2 1 3 30 30 H 1.08993 * 110.48673 * 37.57897 * 5 3 2 31 31 H 1.08997 * 110.48527 * 275.06941 * 5 3 2 32 32 H 1.09007 * 110.03211 * 95.61079 * 6 5 3 33 33 H 1.08997 * 110.03155 * 217.03595 * 6 5 3 34 34 H 1.09005 * 109.49025 * 296.77934 * 10 9 7 35 35 H 1.08995 * 109.49145 * 56.84674 * 10 9 7 36 36 H 1.09000 * 109.48761 * 298.43416 * 11 10 9 37 37 H 1.08995 * 109.50803 * 178.37933 * 11 10 9 38 38 H 1.08998 * 109.46839 * 53.79954 * 13 12 11 39 39 H 1.08995 * 109.47251 * 173.80553 * 13 12 11 40 40 H 0.96994 * 120.00080 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.48509 * 299.34828 * 22 12 11 42 42 H 1.09004 * 109.50515 * 179.30012 * 22 12 11 43 43 H 1.09004 * 109.48414 * 303.16083 * 23 9 7 44 44 H 1.09000 * 109.48741 * 63.22010 * 23 9 7 45 45 H 1.08997 * 110.48513 * 142.28634 * 24 7 6 46 46 H 1.08992 * 110.49419 * 264.93752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6443 1.9932 -0.8534 5 6 1.6774 2.1529 1.3278 6 6 2.7164 3.2867 1.4498 7 6 3.9336 2.8596 0.6109 8 1 4.1105 3.5825 -0.1855 9 7 5.1226 2.7538 1.4672 10 6 5.4762 4.0596 2.0411 11 6 6.6681 3.8925 2.9865 12 7 7.8015 3.3217 2.2456 13 6 8.9906 3.2158 3.1018 14 6 9.4674 4.5966 3.4721 15 1 8.9402 5.4659 3.1076 16 6 10.5767 4.7503 4.2764 17 7 10.9931 5.9552 4.5992 18 14 11.4890 3.2468 4.9063 19 1 12.5505 2.8704 3.9384 20 1 12.1055 3.5568 6.2212 21 1 10.5364 2.1181 5.0600 22 6 7.4479 2.0158 1.6716 23 6 6.2561 2.1830 0.7262 24 6 3.5921 1.4809 0.0089 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7660 1.4624 2.1664 31 1 0.6689 2.5634 1.2777 32 1 2.3020 4.2165 1.0599 33 1 3.0079 3.4155 2.4921 34 1 5.7417 4.7492 1.2397 35 1 4.6253 4.4558 2.5951 36 1 6.3938 3.2242 3.8028 37 1 6.9506 4.8642 3.3914 38 1 8.7384 2.6635 4.0070 39 1 9.7801 2.6910 2.5639 40 1 11.7738 6.0633 5.1647 41 1 7.1825 1.3263 2.4730 42 1 8.2988 1.6193 1.1176 43 1 5.9736 1.2111 0.3216 44 1 6.5304 2.8512 -0.0901 45 1 3.9808 1.4011 -1.0062 46 1 3.9901 0.6822 0.6347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173281572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:44 Heat of formation + Delta-G solvation = -7.798887 kcal Electronic energy + Delta-G solvation = -21041.609644 eV Core-core repulsion = 18158.119536 eV Total energy + Delta-G solvation = -2883.490108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.62324 -37.72242 -34.96897 -32.81281 -31.98347 -30.67917 -28.91556 -28.35481 -26.59313 -24.33804 -23.43585 -22.37560 -21.16896 -19.99651 -19.68839 -19.10365 -16.79967 -16.31330 -15.88953 -14.83356 -14.55015 -14.43086 -14.28530 -14.10303 -13.91186 -13.42274 -13.37305 -13.14486 -12.87307 -12.35051 -12.21150 -11.94694 -11.64338 -11.43624 -11.39336 -11.12642 -10.98592 -10.85358 -10.71974 -10.69316 -10.61780 -10.53377 -10.39991 -10.25578 -9.96224 -9.76985 -9.24063 -8.55494 -8.08133 -7.32568 -6.04027 -4.01183 3.29702 3.37014 3.39804 4.05313 4.38801 4.43470 4.53151 4.71637 4.81704 5.00995 5.06864 5.14277 5.28430 5.32115 5.35621 5.43484 5.47049 5.52328 5.57706 5.63317 5.71294 5.74754 5.75412 5.80694 5.83940 5.92741 5.97111 5.99280 5.99685 6.06947 6.10800 6.18963 6.24524 6.34854 6.38562 6.56106 6.67438 6.87132 7.00468 7.33990 7.36162 7.62135 7.94686 8.08834 8.68001 9.04071 9.58004 11.09112 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043762 B = 0.003600 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.669011 B = 7776.595149 C = 8047.204145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.092 4.092 4 H 0.072 0.928 5 C -0.113 4.113 6 C -0.119 4.119 7 C 0.080 3.920 8 H 0.039 0.961 9 N -0.533 5.533 10 C 0.056 3.944 11 C 0.068 3.932 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.508 4.508 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.054 3.946 23 C 0.060 3.940 24 C -0.113 4.113 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.091 0.909 38 H -0.011 1.011 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.060 0.940 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.310 -10.443 -8.996 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.090 0.910 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.028 4.028 8 H 0.057 0.943 9 N -0.258 5.258 10 C -0.072 4.072 11 C -0.061 4.061 12 N -0.255 5.255 13 C 0.036 3.964 14 C -0.547 4.547 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.075 4.075 23 C -0.068 4.068 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.006 0.994 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.150 -10.334 -8.883 23.504 hybrid contribution 0.712 -0.663 0.368 1.041 sum -18.438 -10.998 -8.515 23.096 Atomic orbital electron populations 1.21777 0.96051 1.01308 1.01789 1.21499 0.95655 0.96187 1.01935 1.22193 0.95200 0.95691 0.98003 0.90955 1.22357 0.98048 0.97335 0.97315 1.22224 0.94494 0.97793 1.01207 1.22241 0.90728 0.96329 0.93527 0.94313 1.62365 1.04180 1.25012 1.34243 1.22251 0.97639 0.89309 0.97956 1.22018 0.89044 1.01192 0.93822 1.62102 1.05107 1.21436 1.36820 1.20149 0.87855 0.98189 0.90176 1.21036 1.12229 0.91700 1.29710 0.90207 1.24900 0.96924 0.95635 0.95898 1.69891 1.25450 1.21268 1.37423 0.86857 0.80418 0.83918 0.78554 1.20175 1.21222 1.19254 1.22111 0.96154 0.91993 0.97230 1.22139 0.90299 0.99018 0.95358 1.22574 0.95049 0.97317 1.00128 0.93058 0.92591 0.92959 0.92223 0.91845 0.91485 0.92151 0.92193 0.90527 0.94374 0.90887 0.95359 0.89104 0.99351 0.95886 0.92685 0.95190 0.91142 0.90991 0.94426 0.92169 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.76 37.16 0.36 -0.69 16 2 C -0.12 -0.91 5.45 -26.73 -0.15 -1.05 16 3 C -0.09 -0.81 2.95 -88.42 -0.26 -1.07 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.11 -1.04 5.46 -25.07 -0.14 -1.18 16 6 C -0.12 -1.29 5.92 -25.62 -0.15 -1.44 16 7 C 0.08 0.97 2.67 -66.60 -0.18 0.79 16 8 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 9 N -0.53 -7.83 4.47 -225.16 -1.01 -8.84 16 10 C 0.06 0.91 5.36 -3.77 -0.02 0.89 16 11 C 0.07 1.35 5.43 -3.77 -0.02 1.32 16 12 N -0.53 -11.45 4.70 -235.91 -1.11 -12.56 16 13 C 0.16 4.04 3.79 -4.97 -0.02 4.02 16 14 C -0.51 -14.61 9.03 -34.44 -0.31 -14.92 16 15 H 0.08 2.49 7.38 -52.49 -0.39 2.10 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 18 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C 0.05 0.97 5.61 -3.77 -0.02 0.95 16 23 C 0.06 0.90 5.32 -3.77 -0.02 0.88 16 24 C -0.11 -1.17 4.58 -24.87 -0.11 -1.28 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.39 7.40 -51.93 -0.38 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.10 -51.92 -0.42 0.11 16 30 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 31 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.92 6.64 -51.93 -0.34 0.57 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.99 6.79 -51.93 -0.35 1.63 16 38 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 39 H 0.02 0.57 7.45 -51.93 -0.39 0.18 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 43 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -30.09 341.42 -10.77 -40.87 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.78 Total: -3.79 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.13 Total: -10.89 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.34 Total: -48.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.09 -10.77 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173281572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.069 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds