Wall clock time and date at job start Mon Mar 30 2020 01:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 H 1.09002 * 110.81227 * 303.11799 * 3 2 1 5 5 C 1.54895 * 110.75547 * 66.45062 * 3 2 1 6 6 C 1.54265 * 104.31063 * 156.32431 * 5 3 2 7 7 C 1.53872 * 106.59969 * 336.32577 * 6 5 3 8 8 H 1.08997 * 110.03464 * 119.33410 * 7 6 5 9 9 N 1.46906 * 110.02622 * 240.71461 * 7 6 5 10 10 C 1.46950 * 111.00152 * 296.54080 * 9 7 6 11 11 C 1.53051 * 109.36669 * 176.81601 * 10 9 7 12 12 N 1.46955 * 109.36484 * 58.39809 * 11 10 9 13 13 C 1.46906 * 111.00252 * 176.81587 * 12 11 10 14 14 C 1.50702 * 109.46775 * 293.80138 * 13 12 11 15 15 H 1.08001 * 120.00388 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00126 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00478 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99454 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47301 * 90.00159 * 18 16 14 20 20 H 1.48501 * 109.46914 * 209.99787 * 18 16 14 21 21 H 1.48494 * 109.47474 * 329.99728 * 18 16 14 22 22 C 1.46960 * 110.88158 * 300.68435 * 12 11 10 23 23 C 1.46965 * 110.99787 * 172.74185 * 9 7 6 24 24 C 1.54260 * 106.60099 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47518 * 300.00006 * 1 2 3 27 27 H 1.09000 * 109.46977 * 60.00526 * 1 2 3 28 28 H 1.08996 * 109.47681 * 239.99472 * 2 1 3 29 29 H 1.09010 * 109.46930 * 119.99610 * 2 1 3 30 30 H 1.08993 * 110.48673 * 37.57897 * 5 3 2 31 31 H 1.08997 * 110.48527 * 275.06941 * 5 3 2 32 32 H 1.09007 * 110.03211 * 95.61079 * 6 5 3 33 33 H 1.08997 * 110.03155 * 217.03595 * 6 5 3 34 34 H 1.09005 * 109.49025 * 296.77934 * 10 9 7 35 35 H 1.08995 * 109.49145 * 56.84674 * 10 9 7 36 36 H 1.09000 * 109.48761 * 298.43416 * 11 10 9 37 37 H 1.08995 * 109.50803 * 178.37933 * 11 10 9 38 38 H 1.08998 * 109.46839 * 53.79954 * 13 12 11 39 39 H 1.08995 * 109.47251 * 173.80553 * 13 12 11 40 40 H 0.96994 * 120.00080 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.48509 * 299.34828 * 22 12 11 42 42 H 1.09004 * 109.50515 * 179.30012 * 22 12 11 43 43 H 1.09004 * 109.48414 * 303.16083 * 23 9 7 44 44 H 1.09000 * 109.48741 * 63.22010 * 23 9 7 45 45 H 1.08997 * 110.48513 * 142.28634 * 24 7 6 46 46 H 1.08992 * 110.49419 * 264.93752 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6443 1.9932 -0.8534 5 6 1.6774 2.1529 1.3278 6 6 2.7164 3.2867 1.4498 7 6 3.9336 2.8596 0.6109 8 1 4.1105 3.5825 -0.1855 9 7 5.1226 2.7538 1.4672 10 6 5.4762 4.0596 2.0411 11 6 6.6681 3.8925 2.9865 12 7 7.8015 3.3217 2.2456 13 6 8.9906 3.2158 3.1018 14 6 9.4674 4.5966 3.4721 15 1 8.9402 5.4659 3.1076 16 6 10.5767 4.7503 4.2764 17 7 10.9931 5.9552 4.5992 18 14 11.4890 3.2468 4.9063 19 1 12.5505 2.8704 3.9384 20 1 12.1055 3.5568 6.2212 21 1 10.5364 2.1181 5.0600 22 6 7.4479 2.0158 1.6716 23 6 6.2561 2.1830 0.7262 24 6 3.5921 1.4809 0.0089 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7660 1.4624 2.1664 31 1 0.6689 2.5634 1.2777 32 1 2.3020 4.2165 1.0599 33 1 3.0079 3.4155 2.4921 34 1 5.7417 4.7492 1.2397 35 1 4.6253 4.4558 2.5951 36 1 6.3938 3.2242 3.8028 37 1 6.9506 4.8642 3.3914 38 1 8.7384 2.6635 4.0070 39 1 9.7801 2.6910 2.5639 40 1 11.7738 6.0633 5.1647 41 1 7.1825 1.3263 2.4730 42 1 8.2988 1.6193 1.1176 43 1 5.9736 1.2111 0.3216 44 1 6.5304 2.8512 -0.0901 45 1 3.9808 1.4011 -1.0062 46 1 3.9901 0.6822 0.6347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173281572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:43 Heat of formation + Delta-G solvation = -27.112002 kcal Electronic energy + Delta-G solvation = -21042.447124 eV Core-core repulsion = 18158.119536 eV Total energy + Delta-G solvation = -2884.327588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74541 -38.92158 -36.29392 -34.61502 -33.20186 -32.03674 -30.43236 -29.35806 -27.89530 -25.74647 -24.63056 -23.32567 -22.97417 -20.98033 -20.74596 -20.27014 -18.95514 -17.53412 -16.81935 -16.37849 -15.92910 -15.82540 -15.57146 -15.35144 -15.21394 -14.76877 -14.54316 -14.35093 -13.98686 -13.78378 -13.49233 -13.13515 -12.85662 -12.82243 -12.57315 -12.36807 -12.28792 -12.22592 -11.91632 -11.85045 -11.76756 -11.65674 -11.49991 -11.36591 -11.26798 -11.21682 -11.14317 -10.79350 -9.30352 -9.04500 -8.29940 -6.33605 1.33767 1.35267 1.46281 2.33255 2.90345 3.02737 3.20495 3.59081 3.74911 3.94240 4.05260 4.18030 4.22587 4.29765 4.35728 4.42576 4.47288 4.51653 4.60617 4.63523 4.69461 4.72869 4.79155 4.80966 4.85762 4.89572 4.94712 4.98899 5.02499 5.07056 5.14254 5.15272 5.18907 5.27682 5.28174 5.32587 5.37076 5.49402 5.51071 5.65643 5.94365 6.07408 6.25020 6.36416 6.63859 6.71990 7.30152 8.86673 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043762 B = 0.003600 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.669011 B = 7776.595149 C = 8047.204145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.079 0.921 5 C -0.108 4.108 6 C -0.119 4.119 7 C 0.078 3.922 8 H 0.034 0.966 9 N -0.535 5.535 10 C 0.069 3.931 11 C 0.072 3.928 12 N -0.547 5.547 13 C 0.173 3.827 14 C -0.517 4.517 15 H 0.037 0.963 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.949 3.051 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.254 1.254 22 C 0.053 3.947 23 C 0.067 3.933 24 C -0.109 4.109 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.024 0.976 37 H 0.058 0.942 38 H -0.015 1.015 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 -12.892 -9.857 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.097 0.903 5 C -0.146 4.146 6 C -0.157 4.157 7 C -0.030 4.030 8 H 0.052 0.948 9 N -0.261 5.261 10 C -0.059 4.059 11 C -0.057 4.057 12 N -0.272 5.272 13 C 0.046 3.954 14 C -0.555 4.555 15 H 0.055 0.945 16 C -0.189 4.189 17 N -0.588 5.588 18 Si 0.772 3.228 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.178 1.178 22 C -0.076 4.076 23 C -0.061 4.061 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.003 0.997 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.425 -12.794 -9.766 26.005 hybrid contribution 1.041 0.181 0.601 1.215 sum -19.385 -12.612 -9.165 24.877 Atomic orbital electron populations 1.21766 0.95305 1.01770 1.01977 1.21474 0.96281 0.95398 1.01907 1.22163 0.93953 0.96396 0.97905 0.90258 1.22327 0.98201 0.96648 0.97422 1.22224 0.94450 0.98896 1.00123 1.22368 0.89830 0.97587 0.93234 0.94754 1.62387 1.04885 1.23663 1.35121 1.22060 0.96556 0.90213 0.97070 1.21923 0.89947 0.99179 0.94634 1.62027 1.04824 1.24036 1.36277 1.19907 0.89430 0.95464 0.90594 1.21239 1.12143 0.92457 1.29707 0.94505 1.25851 0.97907 0.99115 0.96042 1.70044 1.26339 1.23934 1.38492 0.85689 0.79197 0.79744 0.78152 1.18810 1.20595 1.17769 1.22233 0.97846 0.89880 0.97597 1.22106 0.89392 1.00368 0.94246 1.22548 0.96301 0.95659 1.00170 0.92532 0.92661 0.92509 0.91751 0.92405 0.92025 0.90845 0.91379 0.91840 0.95526 0.89111 0.95773 0.92395 0.99722 0.95273 0.92363 0.95163 0.90203 0.88117 0.95168 0.91364 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.76 71.98 0.70 -1.01 16 2 C -0.11 -1.49 5.45 30.59 0.17 -1.32 16 3 C -0.09 -1.27 2.95 -9.37 -0.03 -1.30 16 4 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.11 -1.74 5.46 31.67 0.17 -1.57 16 6 C -0.12 -2.35 5.92 31.32 0.19 -2.16 16 7 C 0.08 1.73 2.67 45.64 0.12 1.85 16 8 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 9 N -0.54 -15.01 4.47 -866.26 -3.87 -18.88 16 10 C 0.07 2.24 5.36 86.31 0.46 2.70 16 11 C 0.07 2.92 5.43 86.31 0.47 3.39 16 12 N -0.55 -23.79 4.70 -900.29 -4.23 -28.03 16 13 C 0.17 8.63 3.79 85.56 0.32 8.95 16 14 C -0.52 -30.71 9.03 25.60 0.23 -30.47 16 15 H 0.04 2.44 7.38 -2.91 -0.02 2.41 16 16 C 0.01 0.49 5.47 84.66 0.46 0.95 16 17 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 18 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.25 -11.33 6.54 99.48 0.65 -10.67 16 22 C 0.05 1.81 5.61 86.31 0.48 2.30 16 23 C 0.07 1.89 5.32 86.30 0.46 2.35 16 24 C -0.11 -1.97 4.58 31.80 0.15 -1.82 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.63 7.40 -2.39 -0.02 0.62 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.83 8.10 -2.38 -0.02 0.81 16 30 H 0.06 1.07 8.01 -2.39 -0.02 1.05 16 31 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.43 6.64 -2.39 -0.02 1.42 16 34 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.09 2.60 6.47 -2.39 -0.02 2.58 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.70 6.79 -2.39 -0.02 2.68 16 38 H -0.01 -0.75 7.18 -2.39 -0.02 -0.76 16 39 H 0.03 1.42 7.45 -2.39 -0.02 1.40 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 43 H 0.10 2.31 6.54 -2.38 -0.02 2.29 16 44 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.42 7.37 -2.39 -0.02 1.41 16 Total: -1.00 -66.08 341.42 -0.71 -66.79 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.85 Total: 10.32 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.36 Total: -17.16 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -7.80 Total: -106.64 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -66.08 -0.71 -66.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173281572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.675 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds