Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47341 * 2 1 4 4 H 1.09001 * 110.01401 * 53.60779 * 3 2 1 5 5 C 1.54267 * 110.03275 * 292.16832 * 3 2 1 6 6 C 1.54889 * 104.19438 * 217.10654 * 5 3 2 7 7 C 1.54883 * 102.75202 * 37.93737 * 6 5 3 8 8 H 1.09003 * 110.48704 * 80.73553 * 7 6 5 9 9 N 1.46897 * 110.48867 * 203.38155 * 7 6 5 10 10 C 1.46953 * 111.00104 * 298.36787 * 9 7 6 11 11 C 1.53052 * 109.36600 * 176.81244 * 10 9 7 12 12 N 1.46951 * 109.36298 * 58.40213 * 11 10 9 13 13 C 1.46902 * 110.99512 * 176.81430 * 12 11 10 14 14 C 1.50698 * 109.47528 * 59.46577 * 13 12 11 15 15 H 1.07998 * 119.99876 * 5.35923 * 14 13 12 16 16 C 1.37876 * 120.00219 * 185.35796 * 14 13 12 17 17 N 1.31515 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47570 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47211 * 120.00195 * 18 16 14 21 21 H 1.48503 * 109.46957 * 239.99758 * 18 16 14 22 22 C 1.46960 * 110.88150 * 300.67776 * 12 11 10 23 23 C 1.46963 * 111.00136 * 174.56938 * 9 7 6 24 24 C 1.53871 * 110.03335 * 174.99820 * 3 2 1 25 25 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47296 * 59.99745 * 1 2 3 27 27 H 1.09001 * 109.47294 * 299.99920 * 1 2 3 28 28 H 1.08999 * 109.47296 * 120.00254 * 2 1 3 29 29 H 1.09001 * 109.47294 * 240.00080 * 2 1 3 30 30 H 1.09006 * 110.48331 * 335.78342 * 5 3 2 31 31 H 1.08997 * 110.48449 * 98.41999 * 5 3 2 32 32 H 1.09002 * 110.74784 * 279.62548 * 6 5 3 33 33 H 1.08998 * 110.91475 * 156.33060 * 6 5 3 34 34 H 1.09002 * 109.49069 * 296.77861 * 10 9 7 35 35 H 1.09000 * 109.48804 * 56.84485 * 10 9 7 36 36 H 1.09006 * 109.48612 * 298.43411 * 11 10 9 37 37 H 1.08999 * 109.50643 * 178.38134 * 11 10 9 38 38 H 1.09011 * 109.46825 * 179.46517 * 13 12 11 39 39 H 1.08994 * 109.47275 * 299.46050 * 13 12 11 40 40 H 0.97003 * 120.00291 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.48857 * 299.35323 * 22 12 11 42 42 H 1.09000 * 109.50631 * 179.30451 * 22 12 11 43 43 H 1.09006 * 109.48652 * 303.15801 * 23 9 7 44 44 H 1.08996 * 109.48874 * 63.19911 * 23 9 7 45 45 H 1.08997 * 110.03562 * 238.57338 * 24 3 2 46 46 H 1.08998 * 110.03092 * 359.95359 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5915 1.9968 0.8244 5 6 1.7006 2.1231 -1.3422 6 6 2.9290 3.0201 -1.6346 7 6 4.1124 2.1496 -1.1440 8 1 4.3786 1.4081 -1.8973 9 7 5.2706 2.9927 -0.8188 10 6 5.7408 3.7219 -2.0048 11 6 6.8944 4.6462 -1.6081 12 7 7.9788 3.8473 -1.0205 13 6 9.1369 4.6905 -0.6953 14 6 8.7224 5.7572 0.2851 15 1 7.7246 5.7525 0.6983 16 6 9.6168 6.7392 0.6546 17 7 10.8321 6.7447 0.1518 18 14 9.1026 8.0619 1.8692 19 1 7.6953 7.8331 2.2840 20 1 9.9849 8.0081 3.0626 21 1 9.2194 9.3959 1.2272 22 6 7.5086 3.1181 0.1657 23 6 6.3552 2.1938 -0.2311 24 6 3.5734 1.4594 0.1260 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.5772 1.3773 -2.1276 31 1 0.7998 2.7292 -1.2455 32 1 2.8721 3.9495 -1.0679 33 1 3.0162 3.2247 -2.7016 34 1 6.0861 3.0112 -2.7556 35 1 4.9235 4.3156 -2.4143 36 1 6.5420 5.3744 -0.8774 37 1 7.2638 5.1670 -2.4915 38 1 9.9212 4.0757 -0.2532 39 1 9.5121 5.1591 -1.6050 40 1 11.4616 7.4353 0.4120 41 1 7.1634 3.8289 0.9164 42 1 8.3258 2.5245 0.5755 43 1 5.9857 1.6733 0.6525 44 1 6.7072 1.4654 -0.9616 45 1 3.8692 2.0226 1.0111 46 1 3.9542 0.4400 0.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173281574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -14.486051 kcal Electronic energy + Delta-G solvation = -21175.780311 eV Core-core repulsion = 18292.000225 eV Total energy + Delta-G solvation = -2883.780085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.51467 -37.70549 -34.91055 -32.77407 -31.86421 -30.47744 -28.67554 -28.08073 -26.13951 -24.32765 -23.28437 -22.26103 -21.65607 -20.16033 -19.46097 -18.98657 -16.54844 -16.14426 -15.31786 -15.07990 -14.64701 -14.28708 -14.12270 -13.94463 -13.83391 -13.52267 -13.29206 -12.92029 -12.73816 -12.17237 -11.88500 -11.86729 -11.45452 -11.39549 -11.21416 -11.04887 -10.87202 -10.75237 -10.70411 -10.60379 -10.52948 -10.43482 -10.31526 -10.18075 -9.94297 -9.75775 -9.45401 -8.40527 -7.97544 -7.11864 -5.99492 -4.08250 3.28815 3.36906 3.41713 4.16182 4.43887 4.45734 4.59381 4.70853 5.00144 5.08693 5.12607 5.26313 5.30958 5.38663 5.42969 5.51485 5.53303 5.59381 5.68351 5.70333 5.71648 5.80572 5.88087 5.91208 5.95734 6.00749 6.02839 6.03336 6.07877 6.21610 6.22063 6.34044 6.37363 6.40712 6.68361 6.83113 6.93925 7.26958 7.47721 7.49292 7.56318 7.93722 8.10542 8.33504 8.34471 9.03066 9.58573 11.05507 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.003895 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.768978 B = 7186.071622 C = 7419.655921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.116 4.116 6 C -0.116 4.116 7 C 0.080 3.920 8 H 0.040 0.960 9 N -0.529 5.529 10 C 0.059 3.941 11 C 0.066 3.934 12 N -0.544 5.544 13 C 0.186 3.814 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.064 3.936 23 C 0.059 3.941 24 C -0.114 4.114 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.076 0.924 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.935 -11.648 -2.325 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.029 4.029 8 H 0.058 0.942 9 N -0.254 5.254 10 C -0.069 4.069 11 C -0.063 4.063 12 N -0.269 5.269 13 C 0.061 3.939 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.065 4.065 23 C -0.069 4.069 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.743 -11.558 -2.326 21.303 hybrid contribution -0.069 0.845 0.713 1.108 sum -17.812 -10.712 -1.613 20.848 Atomic orbital electron populations 1.21789 0.96110 1.01249 1.01827 1.21659 0.95656 0.96390 1.01773 1.21763 0.95479 0.95660 0.97979 0.91059 1.22393 0.97813 0.98431 0.96791 1.22538 0.93480 0.98891 1.00491 1.22453 0.91000 0.93587 0.95834 0.94245 1.62273 1.06480 1.27569 1.29121 1.22222 0.97214 0.96630 0.90835 1.21908 0.90523 0.94499 0.99400 1.62685 1.07550 1.29146 1.27494 1.19734 0.87602 0.90523 0.96053 1.21817 0.98928 1.11404 1.26354 0.92233 1.24970 0.94878 0.97767 0.96267 1.69959 1.05024 1.34407 1.43769 0.86590 0.78732 0.81834 0.81196 1.19772 1.21005 1.20992 1.21925 0.94992 0.96186 0.93411 1.22211 0.91321 0.95038 0.98337 1.22270 0.94282 0.99965 0.98626 0.93111 0.92666 0.92858 0.92170 0.92092 0.91827 0.91853 0.90411 0.92020 0.95092 0.91270 0.93297 0.91516 0.95579 0.94813 0.92931 0.93531 0.91583 0.91285 0.95071 0.90579 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.77 37.15 0.36 -0.75 16 2 C -0.12 -0.97 5.06 -26.73 -0.14 -1.11 16 3 C -0.09 -0.86 2.93 -89.50 -0.26 -1.12 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -1.09 5.53 -25.07 -0.14 -1.23 16 6 C -0.12 -1.32 5.30 -24.74 -0.13 -1.45 16 7 C 0.08 1.02 2.58 -66.06 -0.17 0.85 16 8 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 9 N -0.53 -8.36 4.54 -224.51 -1.02 -9.38 16 10 C 0.06 0.97 5.43 -3.77 -0.02 0.95 16 11 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 12 N -0.54 -12.05 4.92 -235.91 -1.16 -13.21 16 13 C 0.19 4.90 5.14 -4.98 -0.03 4.87 16 14 C -0.55 -15.22 7.65 -34.44 -0.26 -15.48 16 15 H 0.06 1.67 5.82 -52.49 -0.31 1.37 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.06 1.28 5.31 -3.77 -0.02 1.26 16 23 C 0.06 0.97 5.39 -3.77 -0.02 0.95 16 24 C -0.11 -1.29 4.88 -25.61 -0.13 -1.41 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.39 7.51 -51.93 -0.39 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 30 H 0.06 0.56 7.76 -51.93 -0.40 0.16 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.02 6.91 -51.93 -0.36 0.67 16 36 H 0.05 1.10 6.65 -51.93 -0.35 0.76 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.03 0.73 8.12 -51.92 -0.42 0.31 16 39 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.05 1.04 6.74 -51.93 -0.35 0.69 16 42 H 0.07 1.31 8.13 -51.93 -0.42 0.88 16 43 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.97 7.66 -51.93 -0.40 0.57 16 46 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -28.95 342.80 -11.12 -40.07 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.76 Total: -2.90 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.07 Total: -10.65 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -1.44 Total: -48.40 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.95 -11.12 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173281574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.584 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds