Wall clock time and date at job start Mon Mar 30 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46991 * 60.00378 * 11 10 9 13 13 N 1.46905 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00157 * 275.00117 * 13 12 11 15 15 H 1.08997 * 109.47514 * 34.99770 * 14 13 12 16 16 C 1.52997 * 109.47051 * 274.99793 * 14 13 12 17 17 C 1.53006 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47363 * 59.99699 * 17 16 14 19 19 C 1.52997 * 109.47318 * 300.00094 * 18 17 16 20 20 H 1.08997 * 109.46943 * 299.99667 * 19 18 17 21 21 N 1.46903 * 109.47067 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.47108 * 60.00061 * 19 18 17 23 23 C 1.52996 * 109.47131 * 299.99311 * 12 11 10 24 24 C 1.52997 * 109.47078 * 59.99958 * 9 7 2 25 25 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 27 27 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 28 28 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 29 29 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 31 31 H 1.09000 * 109.47611 * 59.99933 * 12 11 10 32 32 H 1.00906 * 110.99817 * 38.95507 * 13 12 11 33 33 H 1.09000 * 109.46883 * 299.99562 * 16 14 13 34 34 H 1.08998 * 109.47347 * 60.00183 * 16 14 13 35 35 H 1.09008 * 109.46749 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46691 * 299.99357 * 17 16 14 37 37 H 1.09008 * 109.46892 * 60.00331 * 18 17 16 38 38 H 1.09004 * 109.47170 * 180.02562 * 18 17 16 39 39 H 1.00898 * 110.99918 * 60.00545 * 21 19 18 40 40 H 1.00901 * 110.99863 * 183.95046 * 21 19 18 41 41 H 1.08998 * 109.47369 * 179.97438 * 22 19 18 42 42 H 1.09005 * 109.47365 * 60.00225 * 22 19 18 43 43 H 1.08996 * 109.47452 * 300.00000 * 23 12 11 44 44 H 1.09000 * 109.47054 * 180.02562 * 23 12 11 45 45 H 1.09002 * 109.47153 * 299.99793 * 24 9 7 46 46 H 1.08996 * 109.46952 * 59.99965 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 0.6005 -5.0684 -1.2478 13 7 -0.1337 -6.3409 -1.2475 14 6 0.6797 -7.4181 -1.8273 15 1 1.7263 -7.2649 -1.5643 16 6 0.5296 -7.4074 -3.3498 17 6 1.3763 -8.5297 -3.9536 18 6 0.9039 -9.8771 -3.4040 19 6 1.0539 -9.8878 -1.8815 20 1 2.1006 -9.7350 -1.6185 21 7 0.5997 -11.1813 -1.3538 22 6 0.2072 -8.7656 -1.2777 23 6 -0.3938 -3.9056 -1.2478 24 6 0.3720 -2.5805 -1.2490 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 0.8903 27 1 2.8721 -3.6042 -0.8894 28 1 2.8721 -3.6043 0.8905 29 1 2.1888 -5.8155 0.0016 30 1 0.8541 -5.0446 0.8913 31 1 1.2268 -5.0110 -2.1380 32 1 -0.4411 -6.5808 -0.3169 33 1 -0.5170 -7.5607 -3.6128 34 1 0.8659 -6.4473 -3.7413 35 1 1.2697 -8.5218 -5.0384 36 1 2.4230 -8.3768 -3.6906 37 1 -0.1429 -10.0299 -3.6671 38 1 1.5074 -10.6766 -3.8339 39 1 1.1435 -11.9395 -1.7377 40 1 0.6282 -11.1905 -0.3452 41 1 0.3137 -8.7734 -0.1930 42 1 -0.8395 -8.9184 -1.5407 43 1 -1.0202 -3.9631 -0.3577 44 1 -1.0210 -3.9639 -2.1373 45 1 -0.3364 -1.7520 -1.2494 46 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:07 Heat of formation + Delta-G solvation = -42.438622 kcal Electronic energy + Delta-G solvation = -21135.975241 eV Core-core repulsion = 18250.983041 eV Total energy + Delta-G solvation = -2884.992200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.36840 -37.69571 -34.82080 -33.19216 -32.13735 -30.04822 -29.51947 -28.14898 -27.12497 -24.16026 -22.50928 -21.77809 -21.22598 -20.21732 -19.76134 -18.72351 -16.29859 -15.93212 -15.70342 -15.20027 -14.92826 -14.77600 -14.43661 -14.13387 -13.42908 -13.12521 -13.08951 -12.58681 -12.44597 -12.23568 -12.04198 -11.74650 -11.67224 -11.26856 -11.23363 -11.00236 -10.82310 -10.73766 -10.52768 -10.36900 -10.33004 -10.20749 -10.13785 -9.72517 -9.34211 -8.96178 -8.89144 -8.68366 -8.25154 -7.96874 -5.93483 -3.99698 3.32444 3.39258 3.42247 4.07950 4.33499 4.47379 4.59204 4.86347 5.00604 5.10356 5.28024 5.30782 5.35396 5.36042 5.39829 5.46058 5.53526 5.61306 5.80965 5.89793 5.94314 5.99954 6.07220 6.11545 6.16022 6.25042 6.36011 6.41933 6.45782 6.54616 6.68390 6.76370 6.81679 6.89111 6.94291 7.15383 7.17390 7.32428 7.46189 7.58550 7.73111 7.80723 8.07732 8.22999 8.52589 9.04475 9.64640 11.11932 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043831 B = 0.003584 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.659973 B = 7809.910388 C = 7873.452769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.104 4.104 11 C -0.142 4.142 12 C 0.092 3.908 13 N -0.683 5.683 14 C 0.090 3.910 15 H 0.040 0.960 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.110 4.110 19 C 0.093 3.907 20 H 0.032 0.968 21 N -0.848 5.848 22 C -0.112 4.112 23 C -0.101 4.101 24 C -0.109 4.109 25 H 0.259 0.741 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.336 0.664 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.339 0.661 40 H 0.340 0.660 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -19.016 -4.484 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.142 4.142 11 C -0.181 4.181 12 C -0.017 4.017 13 N -0.313 5.313 14 C -0.020 4.020 15 H 0.058 0.942 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.148 4.148 19 C -0.018 4.018 20 H 0.050 0.950 21 N -0.378 5.378 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.206 -18.584 -5.417 19.358 hybrid contribution 2.161 0.684 1.184 2.557 sum 2.367 -17.900 -4.233 18.546 Atomic orbital electron populations 1.69881 1.05801 1.26234 1.50953 1.24966 0.94835 0.98936 0.95280 0.86661 0.79887 0.83794 0.78032 1.20765 1.21300 1.20053 1.21240 0.92814 0.90874 1.50214 0.92945 1.18649 0.92568 0.91313 0.94389 1.21565 0.98591 0.94216 0.99866 1.22229 0.98805 0.98555 0.98485 1.21678 0.94214 0.88758 0.97068 1.60730 1.40880 1.02400 1.27267 1.21427 0.95446 0.90099 0.95070 0.94181 1.21543 1.00544 0.98042 0.94426 1.21529 0.99689 0.94508 1.00022 1.21540 1.02196 0.97074 0.93994 1.21300 0.96099 0.89206 0.95215 0.94991 1.58726 1.62445 1.04368 1.12246 1.21711 1.01079 0.93110 0.99172 1.21575 0.97169 0.94720 1.00469 1.21622 0.99558 0.95097 0.98468 0.93114 0.95829 0.93579 0.93764 0.94286 0.92637 0.91269 0.84540 0.91263 0.91842 0.91660 0.92323 0.91039 0.92558 0.84892 0.84730 0.92514 0.90294 0.93118 0.93382 0.88989 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 10 C -0.10 -2.18 5.14 -26.73 -0.14 -2.32 16 11 C -0.14 -2.47 5.16 -26.73 -0.14 -2.61 16 12 C 0.09 1.56 2.28 -67.71 -0.15 1.41 16 13 N -0.68 -9.81 6.06 -99.74 -0.60 -10.42 16 14 C 0.09 1.11 2.31 -67.71 -0.16 0.96 16 15 H 0.04 0.54 7.11 -51.93 -0.37 0.17 16 16 C -0.11 -1.28 5.41 -26.73 -0.14 -1.42 16 17 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 18 C -0.11 -1.01 5.50 -26.74 -0.15 -1.16 16 19 C 0.09 0.88 3.25 -67.71 -0.22 0.66 16 20 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 21 N -0.85 -6.95 9.25 -4.67 -0.04 -7.00 16 22 C -0.11 -1.20 4.73 -26.73 -0.13 -1.33 16 23 C -0.10 -1.99 5.53 -26.71 -0.15 -2.13 16 24 C -0.11 -2.57 4.98 -26.71 -0.13 -2.70 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.62 7.43 -51.93 -0.39 0.23 16 30 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 32 H 0.34 4.63 8.09 -39.29 -0.32 4.32 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.83 7.43 -51.93 -0.39 0.45 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.34 2.25 9.04 -39.29 -0.36 1.90 16 40 H 0.34 2.45 8.99 -39.29 -0.35 2.10 16 41 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -27.94 343.06 -10.85 -38.79 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.73 Total: 5.80 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -2.24 Total: -23.83 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.02 Total: -42.34 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.94 -10.85 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.650 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds