Wall clock time and date at job start Mon Mar 30 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46991 * 60.00378 * 11 10 9 13 13 N 1.46905 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00157 * 275.00117 * 13 12 11 15 15 H 1.08997 * 109.47514 * 34.99770 * 14 13 12 16 16 C 1.52997 * 109.47051 * 274.99793 * 14 13 12 17 17 C 1.53006 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47363 * 59.99699 * 17 16 14 19 19 C 1.52997 * 109.47318 * 300.00094 * 18 17 16 20 20 H 1.08997 * 109.46943 * 299.99667 * 19 18 17 21 21 N 1.46903 * 109.47067 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.47108 * 60.00061 * 19 18 17 23 23 C 1.52996 * 109.47131 * 299.99311 * 12 11 10 24 24 C 1.52997 * 109.47078 * 59.99958 * 9 7 2 25 25 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 27 27 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 28 28 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 29 29 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 31 31 H 1.09000 * 109.47611 * 59.99933 * 12 11 10 32 32 H 1.00906 * 110.99817 * 38.95507 * 13 12 11 33 33 H 1.09000 * 109.46883 * 299.99562 * 16 14 13 34 34 H 1.08998 * 109.47347 * 60.00183 * 16 14 13 35 35 H 1.09008 * 109.46749 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46691 * 299.99357 * 17 16 14 37 37 H 1.09008 * 109.46892 * 60.00331 * 18 17 16 38 38 H 1.09004 * 109.47170 * 180.02562 * 18 17 16 39 39 H 1.00898 * 110.99918 * 60.00545 * 21 19 18 40 40 H 1.00901 * 110.99863 * 183.95046 * 21 19 18 41 41 H 1.08998 * 109.47369 * 179.97438 * 22 19 18 42 42 H 1.09005 * 109.47365 * 60.00225 * 22 19 18 43 43 H 1.08996 * 109.47452 * 300.00000 * 23 12 11 44 44 H 1.09000 * 109.47054 * 180.02562 * 23 12 11 45 45 H 1.09002 * 109.47153 * 299.99793 * 24 9 7 46 46 H 1.08996 * 109.46952 * 59.99965 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 0.6005 -5.0684 -1.2478 13 7 -0.1337 -6.3409 -1.2475 14 6 0.6797 -7.4181 -1.8273 15 1 1.7263 -7.2649 -1.5643 16 6 0.5296 -7.4074 -3.3498 17 6 1.3763 -8.5297 -3.9536 18 6 0.9039 -9.8771 -3.4040 19 6 1.0539 -9.8878 -1.8815 20 1 2.1006 -9.7350 -1.6185 21 7 0.5997 -11.1813 -1.3538 22 6 0.2072 -8.7656 -1.2777 23 6 -0.3938 -3.9056 -1.2478 24 6 0.3720 -2.5805 -1.2490 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 0.8903 27 1 2.8721 -3.6042 -0.8894 28 1 2.8721 -3.6043 0.8905 29 1 2.1888 -5.8155 0.0016 30 1 0.8541 -5.0446 0.8913 31 1 1.2268 -5.0110 -2.1380 32 1 -0.4411 -6.5808 -0.3169 33 1 -0.5170 -7.5607 -3.6128 34 1 0.8659 -6.4473 -3.7413 35 1 1.2697 -8.5218 -5.0384 36 1 2.4230 -8.3768 -3.6906 37 1 -0.1429 -10.0299 -3.6671 38 1 1.5074 -10.6766 -3.8339 39 1 1.1435 -11.9395 -1.7377 40 1 0.6282 -11.1905 -0.3452 41 1 0.3137 -8.7734 -0.1930 42 1 -0.8395 -8.9184 -1.5407 43 1 -1.0202 -3.9631 -0.3577 44 1 -1.0210 -3.9639 -2.1373 45 1 -0.3364 -1.7520 -1.2494 46 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:07 Heat of formation + Delta-G solvation = -59.950318 kcal Electronic energy + Delta-G solvation = -21136.734605 eV Core-core repulsion = 18250.983041 eV Total energy + Delta-G solvation = -2885.751564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44376 -39.06790 -36.16299 -34.48161 -33.56697 -31.56253 -31.05320 -29.10279 -28.45018 -26.01858 -23.34678 -23.33704 -22.57788 -21.53028 -20.73525 -20.34392 -18.39422 -17.00413 -16.61881 -16.47848 -16.03598 -15.94307 -15.71380 -15.09847 -14.81666 -14.76819 -14.54609 -14.19533 -13.73766 -13.66266 -13.24645 -12.94841 -12.84509 -12.74280 -12.58614 -12.49947 -12.31815 -12.19769 -12.07040 -11.85359 -11.63073 -11.56029 -11.27564 -11.17988 -11.11758 -10.71557 -10.61504 -10.34211 -9.59326 -9.21939 -8.06474 -6.20822 1.40396 1.40982 1.51042 2.43659 3.10457 3.19913 3.51995 3.78681 3.92796 4.04079 4.08505 4.16750 4.29344 4.35600 4.46647 4.48113 4.52808 4.57675 4.60119 4.67613 4.71147 4.85135 4.88318 4.94739 5.01661 5.07274 5.16591 5.17486 5.20529 5.27576 5.30348 5.33517 5.34592 5.40965 5.48230 5.53708 5.63683 5.71703 6.04556 6.15833 6.26239 6.30188 6.42618 6.56041 6.63529 6.92151 7.47089 8.97240 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.043831 B = 0.003584 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.659973 B = 7809.910388 C = 7873.452769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.098 4.098 11 C -0.131 4.131 12 C 0.106 3.894 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.037 0.963 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.106 4.106 19 C 0.097 3.903 20 H 0.034 0.966 21 N -0.852 5.852 22 C -0.105 4.105 23 C -0.092 4.092 24 C -0.100 4.100 25 H 0.260 0.740 26 H -0.008 1.008 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.342 0.658 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.349 0.651 40 H 0.346 0.654 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -20.722 -4.822 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.136 4.136 11 C -0.171 4.171 12 C -0.004 4.004 13 N -0.313 5.313 14 C -0.018 4.018 15 H 0.055 0.945 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.015 4.015 20 H 0.052 0.948 21 N -0.384 5.384 22 C -0.144 4.144 23 C -0.130 4.130 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.010 0.990 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.183 -20.315 -5.754 21.147 hybrid contribution 1.831 1.213 1.294 2.549 sum 3.014 -19.102 -4.459 19.846 Atomic orbital electron populations 1.70027 1.07109 1.26974 1.51439 1.25745 0.95681 1.02327 0.94961 0.85660 0.78761 0.79644 0.78215 1.20149 1.20920 1.19374 1.21638 0.92953 0.92508 1.50364 0.93253 1.18616 0.93014 0.92190 0.93381 1.21431 0.97860 0.94545 0.99786 1.22131 0.98966 0.97276 0.98678 1.21377 0.93253 0.89059 0.96721 1.60638 1.40862 1.02001 1.27795 1.21471 0.94873 0.90184 0.95276 0.94463 1.21527 1.00534 0.98232 0.94190 1.21492 0.99299 0.93969 1.00490 1.21506 1.01933 0.97069 0.93934 1.21218 0.95772 0.89281 0.95234 0.94846 1.58685 1.62693 1.04133 1.12853 1.21621 1.00655 0.92580 0.99496 1.21410 0.97312 0.93938 1.00315 1.21408 0.98745 0.96209 0.97545 0.93133 0.99030 0.93561 0.93884 0.91682 0.92646 0.91548 0.83909 0.91965 0.93336 0.90764 0.92040 0.91841 0.91091 0.83736 0.84039 0.91986 0.91275 0.93866 0.92850 0.92479 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.24 8.56 25.60 0.22 -30.02 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.36 2.10 -11.54 -0.02 2.34 16 10 C -0.10 -4.06 5.14 30.60 0.16 -3.90 16 11 C -0.13 -4.39 5.16 30.59 0.16 -4.23 16 12 C 0.11 3.47 2.28 44.91 0.10 3.57 16 13 N -0.68 -18.57 6.06 -469.48 -2.84 -21.42 16 14 C 0.09 2.10 2.31 44.92 0.10 2.20 16 15 H 0.04 0.90 7.11 -2.39 -0.02 0.88 16 16 C -0.11 -2.38 5.41 30.60 0.17 -2.21 16 17 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 18 C -0.11 -1.69 5.50 30.59 0.17 -1.52 16 19 C 0.10 1.57 3.25 44.91 0.15 1.72 16 20 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 21 N -0.85 -11.81 9.25 -168.68 -1.56 -13.37 16 22 C -0.11 -2.02 4.73 30.59 0.14 -1.88 16 23 C -0.09 -3.61 5.53 30.61 0.17 -3.44 16 24 C -0.10 -4.87 4.98 30.61 0.15 -4.71 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.87 7.43 -2.39 -0.02 1.86 16 30 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 31 H 0.07 2.26 7.11 -2.39 -0.02 2.24 16 32 H 0.34 8.79 8.09 -89.69 -0.73 8.06 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.22 7.43 -2.39 -0.02 1.20 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.35 3.70 9.04 -89.70 -0.81 2.89 16 40 H 0.35 4.13 8.99 -89.69 -0.81 3.33 16 41 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 42 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 46 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -60.47 343.06 -1.23 -61.70 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.39 Total: 23.23 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 2.29 Total: -42.81 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -4.16 Total: -88.49 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.47 -1.23 -61.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.750 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds