Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00456 * 2 1 4 4 H 1.48504 * 109.47177 * 274.99308 * 3 2 1 5 5 H 1.48500 * 109.47060 * 34.99372 * 3 2 1 6 6 H 1.48502 * 109.47134 * 154.99069 * 3 2 1 7 7 C 1.37879 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00124 * 189.57678 * 7 2 1 9 9 C 1.50700 * 120.00357 * 9.56874 * 7 2 1 10 10 C 1.52995 * 109.47423 * 185.44877 * 9 7 2 11 11 C 1.52998 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47517 * 60.00067 * 11 10 9 13 13 N 1.46895 * 109.47008 * 59.99746 * 12 11 10 14 14 C 1.46896 * 110.99926 * 155.00671 * 13 12 11 15 15 C 1.53000 * 109.47350 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.47350 * 180.02562 * 15 14 13 17 17 C 1.48531 * 111.00522 * 52.59797 * 16 15 14 18 18 C 1.54932 * 103.22759 * 159.72248 * 17 16 15 19 19 C 1.54597 * 102.92270 * 322.58788 * 18 17 16 20 20 C 1.47906 * 111.00280 * 170.00107 * 16 15 14 21 21 C 1.53002 * 109.46860 * 300.00262 * 12 11 10 22 22 C 1.52998 * 109.47269 * 59.99586 * 21 12 11 23 23 H 0.97006 * 119.99895 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46903 * 305.45308 * 9 7 2 25 25 H 1.08995 * 109.47592 * 60.00119 * 10 9 7 26 26 H 1.08996 * 109.47140 * 299.99821 * 10 9 7 27 27 H 1.09005 * 109.47355 * 299.99929 * 11 10 9 28 28 H 1.09005 * 109.47222 * 179.97438 * 11 10 9 29 29 H 1.08994 * 109.47117 * 180.02562 * 12 11 10 30 30 H 1.00902 * 111.00396 * 31.05027 * 13 12 11 31 31 H 1.08997 * 109.47509 * 59.99652 * 14 13 12 32 32 H 1.09003 * 109.47114 * 299.99324 * 14 13 12 33 33 H 1.09004 * 109.46963 * 299.99597 * 15 14 13 34 34 H 1.08997 * 109.47338 * 59.99254 * 15 14 13 35 35 H 1.09002 * 110.66743 * 278.16253 * 17 16 15 36 36 H 1.09000 * 110.66226 * 41.28630 * 17 16 15 37 37 H 1.09003 * 110.72493 * 204.23234 * 18 17 16 38 38 H 1.08994 * 110.72634 * 80.94988 * 18 17 16 39 39 H 1.09008 * 110.30542 * 263.03996 * 19 18 17 40 40 H 1.09000 * 110.39391 * 140.92251 * 19 18 17 41 41 H 1.09003 * 109.91162 * 333.50419 * 20 16 15 42 42 H 1.08994 * 109.92428 * 94.59884 * 20 16 15 43 43 H 1.08994 * 109.47158 * 180.02562 * 21 12 11 44 44 H 1.09005 * 109.46810 * 299.99402 * 21 12 11 45 45 H 1.09005 * 109.47222 * 180.02562 * 22 21 12 46 46 H 1.08999 * 109.47268 * 60.00561 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5035 2.6199 0.8029 6 1 3.5955 1.4118 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0732 -1.2008 0.1551 9 6 1.2666 -2.4900 -0.2181 10 6 2.2321 -3.6631 -0.0376 11 6 1.4831 -4.9787 -0.2591 12 6 0.9073 -5.0055 -1.6764 13 7 2.0006 -4.8943 -2.6512 14 6 1.6194 -5.4881 -3.9396 15 6 2.7809 -5.3540 -4.9265 16 7 2.3995 -5.9472 -6.2151 17 6 1.1117 -5.3870 -6.6988 18 6 1.1407 -5.6916 -8.2176 19 6 2.6263 -5.4735 -8.5856 20 6 3.3958 -5.6288 -7.2609 21 6 -0.0581 -3.8324 -1.8569 22 6 0.6908 -2.5168 -1.6354 23 1 -0.4850 0.8401 0.0004 24 1 0.4556 -2.5723 0.5056 25 1 2.6426 -3.6439 0.9719 26 1 3.0430 -3.5809 -0.7612 27 1 0.6719 -5.0612 0.4643 28 1 2.1711 -5.8145 -0.1309 29 1 0.3734 -5.9426 -1.8339 30 1 2.8463 -5.3143 -2.2956 31 1 0.7453 -4.9699 -4.3341 32 1 1.3834 -6.5428 -3.7981 33 1 3.0174 -4.2994 -5.0682 34 1 3.6547 -5.8724 -4.5318 35 1 0.2702 -5.8893 -6.2216 36 1 1.0695 -4.3121 -6.5227 37 1 0.5023 -4.9963 -8.7627 38 1 0.8429 -6.7222 -8.4101 39 1 2.7722 -4.4730 -8.9929 40 1 2.9540 -6.2251 -9.3038 41 1 3.9059 -4.6971 -7.0163 42 1 4.1209 -6.4386 -7.3419 43 1 -0.4687 -3.8517 -2.8663 44 1 -0.8694 -3.9149 -1.1335 45 1 0.0029 -1.6810 -1.7635 46 1 1.5020 -2.4342 -2.3587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = -17.480788 kcal Electronic energy + Delta-G solvation = -21050.236383 eV Core-core repulsion = 18166.326436 eV Total energy + Delta-G solvation = -2883.909947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.18127 -38.16480 -34.80632 -32.82934 -31.48102 -29.69819 -29.22022 -28.80186 -26.29414 -24.26146 -22.73168 -21.48503 -20.98269 -20.45654 -20.39058 -18.12491 -16.33384 -16.20449 -15.96459 -15.34758 -14.91477 -14.51951 -14.21192 -13.82110 -13.80080 -13.03972 -12.95324 -12.61565 -12.39705 -12.11661 -11.99758 -11.56529 -11.49131 -11.43814 -11.26512 -11.14976 -11.04671 -10.84410 -10.74765 -10.65105 -10.50624 -10.14370 -10.03478 -9.73860 -9.22544 -8.69989 -8.53001 -8.51537 -8.16243 -7.90618 -5.89455 -3.89086 3.37122 3.44116 3.47332 3.79614 4.44128 4.54036 4.54269 4.67853 4.86156 5.10779 5.16180 5.25176 5.35603 5.42730 5.49317 5.52722 5.59203 5.62442 5.65579 5.68979 5.76217 5.81195 5.86433 5.97194 6.04786 6.08130 6.22392 6.37886 6.43854 6.53487 6.57893 6.76395 6.83435 6.89308 6.93958 7.06783 7.30492 7.46199 7.57160 7.67414 7.77508 7.90784 8.20338 8.22351 8.62878 9.15392 9.72952 11.19637 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004253 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.768223 B = 6582.523716 C = 7233.732334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.672 5.672 14 C 0.062 3.938 15 C 0.048 3.952 16 N -0.519 5.519 17 C 0.032 3.968 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.035 3.965 21 C -0.105 4.105 22 C -0.090 4.090 23 H 0.257 0.743 24 H 0.025 0.975 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.335 0.665 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -12.795 -13.255 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.013 4.013 13 N -0.304 5.304 14 C -0.067 4.067 15 C -0.080 4.080 16 N -0.244 5.244 17 C -0.096 4.096 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.128 4.128 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.501 -12.593 -13.332 18.508 hybrid contribution 0.553 0.914 0.093 1.073 sum 3.054 -11.678 -13.238 17.915 Atomic orbital electron populations 1.69978 1.05863 1.26101 1.50966 1.24937 0.94693 0.98792 0.95399 0.86743 0.80111 0.84253 0.77852 1.20875 1.21502 1.20011 1.21223 0.93946 0.91295 1.48233 0.92999 1.18613 0.93741 0.91350 0.93112 1.21526 0.99100 0.93935 0.99335 1.21757 0.99705 0.98898 0.95292 1.21475 0.91841 0.96589 0.91347 1.60390 1.06184 1.60875 1.02940 1.21960 0.97526 0.96862 0.90398 1.22253 0.98280 0.98156 0.89303 1.64783 1.02570 1.54845 1.02207 1.23263 0.93216 0.98402 0.94738 1.22484 0.96157 1.02043 0.95559 1.22392 0.95536 1.01818 0.97182 1.22860 0.95217 1.00165 0.91061 1.21595 0.96842 0.96970 0.98944 1.21354 0.98734 0.93390 0.99357 0.93321 0.95715 0.94147 0.92621 0.92093 0.93940 0.95636 0.84672 0.91087 0.95295 0.93426 0.90946 0.89998 0.93231 0.91124 0.90898 0.91560 0.91173 0.93597 0.90541 0.94448 0.93057 0.92078 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 12.16 55.43 0.67 -25.49 16 2 C 0.06 1.78 5.20 -17.82 -0.09 1.68 16 3 Si 0.88 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.28 8.48 -34.44 -0.29 -14.57 16 8 H 0.05 1.45 7.77 -52.48 -0.41 1.04 16 9 C 0.05 1.26 1.97 -91.77 -0.18 1.08 16 10 C -0.10 -2.12 4.99 -26.73 -0.13 -2.25 16 11 C -0.12 -2.05 5.30 -26.73 -0.14 -2.19 16 12 C 0.10 1.62 2.82 -67.71 -0.19 1.43 16 13 N -0.67 -10.47 4.82 -106.73 -0.51 -10.98 16 14 C 0.06 0.85 5.14 -3.83 -0.02 0.83 16 15 C 0.05 0.61 5.29 -3.83 -0.02 0.59 16 16 N -0.52 -6.03 5.40 -230.46 -1.24 -7.27 16 17 C 0.03 0.34 5.10 -1.90 -0.01 0.33 16 18 C -0.12 -1.10 7.06 -24.87 -0.18 -1.28 16 19 C -0.13 -1.12 6.93 -25.38 -0.18 -1.29 16 20 C 0.04 0.35 6.70 -2.76 -0.02 0.33 16 21 C -0.11 -2.06 5.53 -26.73 -0.15 -2.20 16 22 C -0.09 -2.14 4.88 -26.73 -0.13 -2.27 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.16 7.48 -51.93 -0.39 0.77 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.03 0.40 7.80 -51.93 -0.41 0.00 16 30 H 0.34 4.85 8.19 -39.29 -0.32 4.52 16 31 H 0.07 1.03 6.09 -51.93 -0.32 0.72 16 32 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.05 0.66 7.81 -51.93 -0.41 0.26 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 36 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.64 6.91 -51.93 -0.36 1.28 16 46 H 0.05 1.21 7.60 -51.93 -0.39 0.81 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -28.94 344.81 -11.43 -40.37 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.79 Total: 1.19 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.73 Total: -19.77 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -1.08 Total: -43.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.94 -11.43 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.891 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds