Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00456 * 2 1 4 4 H 1.48504 * 109.47177 * 274.99308 * 3 2 1 5 5 H 1.48500 * 109.47060 * 34.99372 * 3 2 1 6 6 H 1.48502 * 109.47134 * 154.99069 * 3 2 1 7 7 C 1.37879 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00124 * 189.57678 * 7 2 1 9 9 C 1.50700 * 120.00357 * 9.56874 * 7 2 1 10 10 C 1.52995 * 109.47423 * 185.44877 * 9 7 2 11 11 C 1.52998 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47517 * 60.00067 * 11 10 9 13 13 N 1.46895 * 109.47008 * 59.99746 * 12 11 10 14 14 C 1.46896 * 110.99926 * 155.00671 * 13 12 11 15 15 C 1.53000 * 109.47350 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.47350 * 180.02562 * 15 14 13 17 17 C 1.48531 * 111.00522 * 52.59797 * 16 15 14 18 18 C 1.54932 * 103.22759 * 159.72248 * 17 16 15 19 19 C 1.54597 * 102.92270 * 322.58788 * 18 17 16 20 20 C 1.47906 * 111.00280 * 170.00107 * 16 15 14 21 21 C 1.53002 * 109.46860 * 300.00262 * 12 11 10 22 22 C 1.52998 * 109.47269 * 59.99586 * 21 12 11 23 23 H 0.97006 * 119.99895 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46903 * 305.45308 * 9 7 2 25 25 H 1.08995 * 109.47592 * 60.00119 * 10 9 7 26 26 H 1.08996 * 109.47140 * 299.99821 * 10 9 7 27 27 H 1.09005 * 109.47355 * 299.99929 * 11 10 9 28 28 H 1.09005 * 109.47222 * 179.97438 * 11 10 9 29 29 H 1.08994 * 109.47117 * 180.02562 * 12 11 10 30 30 H 1.00902 * 111.00396 * 31.05027 * 13 12 11 31 31 H 1.08997 * 109.47509 * 59.99652 * 14 13 12 32 32 H 1.09003 * 109.47114 * 299.99324 * 14 13 12 33 33 H 1.09004 * 109.46963 * 299.99597 * 15 14 13 34 34 H 1.08997 * 109.47338 * 59.99254 * 15 14 13 35 35 H 1.09002 * 110.66743 * 278.16253 * 17 16 15 36 36 H 1.09000 * 110.66226 * 41.28630 * 17 16 15 37 37 H 1.09003 * 110.72493 * 204.23234 * 18 17 16 38 38 H 1.08994 * 110.72634 * 80.94988 * 18 17 16 39 39 H 1.09008 * 110.30542 * 263.03996 * 19 18 17 40 40 H 1.09000 * 110.39391 * 140.92251 * 19 18 17 41 41 H 1.09003 * 109.91162 * 333.50419 * 20 16 15 42 42 H 1.08994 * 109.92428 * 94.59884 * 20 16 15 43 43 H 1.08994 * 109.47158 * 180.02562 * 21 12 11 44 44 H 1.09005 * 109.46810 * 299.99402 * 21 12 11 45 45 H 1.09005 * 109.47222 * 180.02562 * 22 21 12 46 46 H 1.08999 * 109.47268 * 60.00561 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5035 2.6199 0.8029 6 1 3.5955 1.4118 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0732 -1.2008 0.1551 9 6 1.2666 -2.4900 -0.2181 10 6 2.2321 -3.6631 -0.0376 11 6 1.4831 -4.9787 -0.2591 12 6 0.9073 -5.0055 -1.6764 13 7 2.0006 -4.8943 -2.6512 14 6 1.6194 -5.4881 -3.9396 15 6 2.7809 -5.3540 -4.9265 16 7 2.3995 -5.9472 -6.2151 17 6 1.1117 -5.3870 -6.6988 18 6 1.1407 -5.6916 -8.2176 19 6 2.6263 -5.4735 -8.5856 20 6 3.3958 -5.6288 -7.2609 21 6 -0.0581 -3.8324 -1.8569 22 6 0.6908 -2.5168 -1.6354 23 1 -0.4850 0.8401 0.0004 24 1 0.4556 -2.5723 0.5056 25 1 2.6426 -3.6439 0.9719 26 1 3.0430 -3.5809 -0.7612 27 1 0.6719 -5.0612 0.4643 28 1 2.1711 -5.8145 -0.1309 29 1 0.3734 -5.9426 -1.8339 30 1 2.8463 -5.3143 -2.2956 31 1 0.7453 -4.9699 -4.3341 32 1 1.3834 -6.5428 -3.7981 33 1 3.0174 -4.2994 -5.0682 34 1 3.6547 -5.8724 -4.5318 35 1 0.2702 -5.8893 -6.2216 36 1 1.0695 -4.3121 -6.5227 37 1 0.5023 -4.9963 -8.7627 38 1 0.8429 -6.7222 -8.4101 39 1 2.7722 -4.4730 -8.9929 40 1 2.9540 -6.2251 -9.3038 41 1 3.9059 -4.6971 -7.0163 42 1 4.1209 -6.4386 -7.3419 43 1 -0.4687 -3.8517 -2.8663 44 1 -0.8694 -3.9149 -1.1335 45 1 0.0029 -1.6810 -1.7635 46 1 1.5020 -2.4342 -2.3587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = -35.166513 kcal Electronic energy + Delta-G solvation = -21051.003293 eV Core-core repulsion = 18166.326436 eV Total energy + Delta-G solvation = -2884.676857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19568 -39.53060 -36.25834 -34.49047 -32.83864 -31.37015 -30.56993 -29.80475 -27.55656 -26.14752 -23.78932 -23.06067 -22.26400 -21.69111 -21.32704 -19.74461 -18.34806 -17.25788 -16.91974 -16.61729 -16.41383 -16.11239 -15.44415 -15.14442 -14.80208 -14.63974 -14.19014 -14.02206 -13.71579 -13.57421 -13.27056 -13.13768 -12.87503 -12.73572 -12.57875 -12.54419 -12.30198 -12.16187 -12.01427 -11.94751 -11.74155 -11.70242 -11.61512 -11.41592 -11.14289 -10.55067 -10.42642 -10.30973 -9.43264 -9.15429 -8.07726 -6.14666 1.39339 1.40940 1.50753 2.45685 2.84824 3.22164 3.50340 3.76069 3.78237 3.99837 4.06598 4.12588 4.19197 4.29795 4.33281 4.36141 4.59716 4.64072 4.68436 4.72003 4.78498 4.85855 4.90166 4.92978 4.95934 4.97816 4.99886 5.03788 5.06926 5.13032 5.19822 5.22290 5.31458 5.35738 5.48618 5.63520 5.69151 5.79450 5.90448 6.01319 6.15045 6.20107 6.26460 6.50640 6.64208 6.99666 7.51001 9.00503 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004253 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.768223 B = 6582.523716 C = 7233.732334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.047 3.953 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.105 3.895 13 N -0.685 5.685 14 C 0.071 3.929 15 C 0.056 3.944 16 N -0.524 5.524 17 C 0.027 3.973 18 C -0.120 4.120 19 C -0.128 4.128 20 C 0.031 3.969 21 C -0.100 4.100 22 C -0.076 4.076 23 H 0.258 0.742 24 H -0.012 1.012 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.345 0.655 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.019 0.981 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -14.296 -14.342 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.004 4.004 13 N -0.318 5.318 14 C -0.059 4.059 15 C -0.072 4.072 16 N -0.249 5.249 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.166 4.166 20 C -0.097 4.097 21 C -0.138 4.138 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.007 0.993 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.502 -14.105 -14.423 20.475 hybrid contribution 0.244 1.398 0.436 1.484 sum 3.746 -12.707 -13.987 19.265 Atomic orbital electron populations 1.70104 1.07262 1.26855 1.51760 1.25698 0.95497 1.02194 0.95144 0.85747 0.79081 0.80124 0.77951 1.20435 1.21037 1.19174 1.21640 0.93997 0.93019 1.48173 0.93401 1.18590 0.93405 0.92316 0.92799 1.21359 0.98350 0.94250 0.99090 1.21693 0.99939 0.97760 0.95572 1.21312 0.91742 0.95988 0.91368 1.60275 1.06257 1.61886 1.03407 1.21881 0.97464 0.96937 0.89582 1.22134 0.98110 0.97174 0.89797 1.64815 1.03212 1.54649 1.02213 1.23297 0.92979 0.97389 0.96374 1.22488 0.96672 1.02689 0.93992 1.22405 0.94981 1.02618 0.96646 1.22951 0.95234 1.00143 0.91382 1.21501 0.97028 0.96007 0.99298 1.21081 0.97731 0.94394 0.98177 0.93342 0.99349 0.94609 0.92507 0.92316 0.90471 0.93164 0.83555 0.92234 0.94325 0.95327 0.90166 0.90082 0.94780 0.90144 0.90253 0.91203 0.89628 0.94321 0.89666 0.93475 0.93728 0.96170 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.70 12.16 21.45 0.26 -55.44 16 2 C 0.01 0.74 5.20 84.66 0.44 1.18 16 3 Si 0.94 45.28 29.55 68.60 2.03 47.31 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.53 -30.40 8.48 25.60 0.22 -30.19 16 8 H 0.05 2.71 7.77 -2.91 -0.02 2.69 16 9 C 0.05 2.44 1.97 -11.54 -0.02 2.42 16 10 C -0.09 -3.83 4.99 30.59 0.15 -3.67 16 11 C -0.11 -3.63 5.30 30.60 0.16 -3.47 16 12 C 0.11 3.32 2.82 44.92 0.13 3.45 16 13 N -0.68 -20.05 4.82 -491.59 -2.37 -22.43 16 14 C 0.07 1.81 5.14 86.30 0.44 2.25 16 15 C 0.06 1.34 5.29 86.30 0.46 1.80 16 16 N -0.52 -11.39 5.40 -883.04 -4.76 -16.16 16 17 C 0.03 0.57 5.10 86.65 0.44 1.01 16 18 C -0.12 -1.91 7.06 31.80 0.22 -1.68 16 19 C -0.13 -1.93 6.93 31.47 0.22 -1.71 16 20 C 0.03 0.57 6.70 86.44 0.58 1.15 16 21 C -0.10 -3.88 5.53 30.59 0.17 -3.71 16 22 C -0.08 -3.67 4.88 30.60 0.15 -3.52 16 23 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 24 H -0.01 -0.68 8.09 -2.39 -0.02 -0.70 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 2.31 7.48 -2.39 -0.02 2.29 16 27 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.08 2.02 8.12 -2.38 -0.02 2.00 16 29 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 30 H 0.35 9.06 8.19 -89.69 -0.73 8.33 16 31 H 0.06 1.66 6.09 -2.39 -0.01 1.65 16 32 H 0.04 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.03 0.78 7.81 -2.38 -0.02 0.77 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.67 7.66 -2.39 -0.02 1.65 16 36 H 0.03 0.80 8.00 -2.39 -0.02 0.78 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.77 7.57 -2.39 -0.02 0.75 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.71 7.45 -2.39 -0.02 1.70 16 44 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.02 1.11 6.91 -2.38 -0.02 1.09 16 46 H 0.04 2.01 7.60 -2.39 -0.02 1.99 16 Total: -1.00 -63.33 344.81 -0.91 -64.23 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.18 Total: 17.19 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.76 Total: -34.71 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -6.88 Total: -94.03 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -63.33 -0.91 -64.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.066 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds