Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 N 1.46898 * 109.47335 * 120.00660 * 2 1 3 5 5 C 1.47955 * 111.00125 * 175.00343 * 4 2 1 6 6 C 1.53940 * 86.17606 * 222.41491 * 5 4 2 7 7 N 1.46902 * 113.73233 * 138.07978 * 6 5 4 8 8 C 1.46906 * 110.99927 * 154.99873 * 7 6 5 9 9 C 1.52997 * 109.46907 * 274.99822 * 8 7 6 10 10 C 1.52996 * 109.47165 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46969 * 60.00104 * 10 9 8 12 12 C 1.50706 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99823 * 119.99738 * 12 11 10 14 14 C 1.37879 * 119.99661 * 299.99958 * 12 11 10 15 15 N 1.31515 * 120.00032 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47201 * 89.99813 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99987 * 16 14 12 19 19 H 1.48498 * 109.47118 * 329.99645 * 16 14 12 20 20 C 1.52997 * 109.47092 * 299.99940 * 11 10 9 21 21 C 1.52993 * 109.47378 * 154.99917 * 8 7 6 22 22 C 1.47952 * 111.00196 * 75.63541 * 4 2 1 23 23 H 1.09000 * 109.47011 * 299.99808 * 1 2 3 24 24 H 1.09004 * 109.47174 * 59.99445 * 1 2 3 25 25 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46922 * 240.00741 * 2 1 3 27 27 H 1.09001 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47243 * 300.00341 * 3 2 1 29 29 H 1.09000 * 109.46942 * 60.00150 * 3 2 1 30 30 H 1.09001 * 113.76532 * 108.09908 * 5 4 2 31 31 H 1.09003 * 113.76025 * 336.72353 * 5 4 2 32 32 H 1.09003 * 113.73191 * 269.25121 * 6 5 4 33 33 H 1.00902 * 111.00001 * 278.94403 * 7 6 5 34 34 H 1.09000 * 109.47033 * 34.99658 * 8 7 6 35 35 H 1.09000 * 109.47140 * 299.99770 * 9 8 7 36 36 H 1.09001 * 109.47375 * 59.99788 * 9 8 7 37 37 H 1.09004 * 109.47552 * 300.00012 * 10 9 8 38 38 H 1.09004 * 109.47298 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47312 * 60.00061 * 11 10 9 40 40 H 0.97003 * 119.99476 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47140 * 300.00226 * 20 11 10 42 42 H 1.09001 * 109.47375 * 180.02562 * 20 11 10 43 43 H 1.09004 * 109.46862 * 299.99897 * 21 8 7 44 44 H 1.09004 * 109.46998 * 59.99419 * 21 8 7 45 45 H 1.09008 * 113.75892 * 23.27001 * 22 4 2 46 46 H 1.08995 * 113.76123 * 251.90354 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4938 -0.8174 1.1748 6 6 3.2776 -2.2535 1.6853 7 7 4.1453 -3.2475 1.0394 8 6 4.3447 -4.4157 1.9075 9 6 5.4945 -4.1394 2.8782 10 6 5.7018 -5.3558 3.7828 11 6 6.0403 -6.5770 2.9255 12 6 6.2439 -7.7754 3.8165 13 1 5.6160 -8.6466 3.7015 14 6 7.2316 -7.7594 4.7783 15 7 7.9964 -6.6987 4.9179 16 14 7.4834 -9.2445 5.8831 17 1 8.4577 -10.1709 5.2526 18 1 8.0050 -8.7988 7.2002 19 1 6.1877 -9.9442 6.0748 20 6 4.8904 -6.8533 1.9549 21 6 4.6834 -5.6365 1.0500 22 6 1.8734 -2.1585 1.0620 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 4.0014 -0.1691 1.8891 31 1 3.9222 -0.7671 0.1738 32 1 3.2723 -2.3366 2.7722 33 1 3.7743 -3.5228 0.1424 34 1 3.4320 -4.6095 2.4711 35 1 6.4072 -3.9456 2.3146 36 1 5.2533 -3.2696 3.4892 37 1 4.7891 -5.5492 4.3464 38 1 6.5213 -5.1591 4.4741 39 1 6.9530 -6.3837 2.3619 40 1 8.6911 -6.6874 5.5949 41 1 3.9777 -7.0467 2.5185 42 1 5.1313 -7.7236 1.3444 43 1 3.8641 -5.8334 0.3584 44 1 5.5960 -5.4427 0.4863 45 1 1.8279 -2.5003 0.0279 46 1 1.0864 -2.5816 1.6861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = 8.644711 kcal Electronic energy + Delta-G solvation = -20841.952581 eV Core-core repulsion = 17959.175521 eV Total energy + Delta-G solvation = -2882.777060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32997 -37.87152 -35.01573 -33.31584 -31.70293 -29.70657 -28.39850 -27.92031 -25.78658 -25.52658 -23.96315 -21.77689 -20.76550 -20.12812 -19.83247 -18.61524 -16.42859 -16.29387 -15.83795 -15.21831 -14.77681 -14.52216 -14.02730 -13.81683 -13.56063 -13.00059 -12.93665 -12.80507 -12.39846 -12.31142 -12.23046 -12.09599 -11.69491 -11.54730 -11.27826 -11.21303 -11.00551 -10.89131 -10.72381 -10.55033 -10.45001 -10.21410 -10.10000 -9.79968 -9.30140 -8.97628 -8.86649 -8.60578 -8.25154 -8.12471 -5.92913 -3.99052 3.32952 3.39786 3.42855 3.72967 4.29493 4.47846 4.50850 4.68457 4.75501 4.92895 5.07736 5.20415 5.32873 5.36256 5.39993 5.44443 5.50855 5.55729 5.58101 5.62144 5.74707 5.77493 5.87052 5.89550 5.94906 6.04522 6.19534 6.26260 6.36924 6.46180 6.46383 6.65464 6.75038 6.78656 6.95763 6.98326 7.18835 7.28712 7.42482 7.59032 7.61089 7.81298 8.08669 8.23025 8.53011 9.05233 9.65282 11.12523 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.003319 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.150448 B = 8435.520429 C = 8634.191770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 C -0.144 4.144 4 N -0.475 5.475 5 C 0.012 3.988 6 C 0.068 3.932 7 N -0.677 5.677 8 C 0.092 3.908 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.049 3.951 12 C -0.513 4.513 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.026 4.026 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.335 0.665 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.030 0.970 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.259 0.741 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 12.556 -9.778 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.202 4.202 4 N -0.199 5.199 5 C -0.117 4.117 6 C -0.044 4.044 7 N -0.307 5.307 8 C -0.017 4.017 9 C -0.139 4.139 10 C -0.148 4.148 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.157 4.157 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.448 13.285 -8.953 19.690 hybrid contribution -0.415 -1.524 -0.237 1.597 sum -11.863 11.761 -9.190 19.066 Atomic orbital electron populations 1.21748 0.94308 1.01835 1.01927 1.22159 0.96229 0.95933 0.92280 1.21806 1.01169 0.95177 1.02032 1.68527 1.09116 1.07392 1.34885 1.24069 0.89400 0.96879 1.01338 1.23463 0.88962 0.92276 0.99672 1.60545 1.49960 1.14235 1.05937 1.21642 0.98101 0.88197 0.93738 1.21605 0.96902 0.98683 0.96719 1.21622 1.01009 0.93607 0.98564 1.18648 0.92348 0.93528 0.92409 1.21245 1.16282 1.00598 1.17003 0.92914 1.24967 0.95887 0.95831 0.97340 1.69884 1.20530 1.28030 1.34421 0.86665 0.78300 0.83256 0.80175 1.20796 1.21300 1.20043 1.21602 1.00477 0.94896 0.97408 1.21730 1.00397 0.95549 0.97711 1.24703 1.00234 0.90391 1.00372 0.91882 0.92495 0.92878 0.93750 0.92531 0.92405 0.91873 0.89400 0.90997 0.87680 0.84641 0.94357 0.92357 0.94270 0.95142 0.88979 0.95673 0.93124 0.93596 0.93412 0.94078 0.91831 0.91429 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.32 37.16 0.35 -0.85 16 2 C 0.04 0.41 2.27 -67.71 -0.15 0.25 16 3 C -0.14 -1.23 9.18 37.16 0.34 -0.88 16 4 N -0.48 -5.27 5.98 -230.47 -1.38 -6.65 16 5 C 0.01 0.14 6.64 -2.77 -0.02 0.12 16 6 C 0.07 0.85 4.06 -69.41 -0.28 0.57 16 7 N -0.68 -9.40 6.44 -100.97 -0.65 -10.05 16 8 C 0.09 1.53 2.34 -67.71 -0.16 1.37 16 9 C -0.10 -1.97 5.42 -26.73 -0.14 -2.12 16 10 C -0.11 -2.57 4.98 -26.73 -0.13 -2.70 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 12 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.11 -2.17 5.14 -26.71 -0.14 -2.31 16 21 C -0.12 -1.98 5.20 -26.71 -0.14 -2.12 16 22 C -0.03 -0.29 6.97 -2.77 -0.02 -0.31 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.46 7.73 -51.93 -0.40 0.06 16 26 H 0.04 0.43 7.68 -51.93 -0.40 0.03 16 27 H 0.06 0.49 7.33 -51.93 -0.38 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 32 H 0.11 1.47 7.50 -51.93 -0.39 1.09 16 33 H 0.33 4.18 7.81 -39.29 -0.31 3.87 16 34 H 0.04 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.69 7.37 -51.92 -0.38 0.31 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -27.66 348.88 -11.07 -38.73 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.83 Total: 2.01 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -1.08 Total: -20.78 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -1.40 Total: -41.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.66 -11.07 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.374 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds