Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 N 1.46898 * 109.47335 * 120.00660 * 2 1 3 5 5 C 1.47955 * 111.00125 * 175.00343 * 4 2 1 6 6 C 1.53940 * 86.17606 * 222.41491 * 5 4 2 7 7 N 1.46902 * 113.73233 * 138.07978 * 6 5 4 8 8 C 1.46906 * 110.99927 * 154.99873 * 7 6 5 9 9 C 1.52997 * 109.46907 * 274.99822 * 8 7 6 10 10 C 1.52996 * 109.47165 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46969 * 60.00104 * 10 9 8 12 12 C 1.50706 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99823 * 119.99738 * 12 11 10 14 14 C 1.37879 * 119.99661 * 299.99958 * 12 11 10 15 15 N 1.31515 * 120.00032 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47201 * 89.99813 * 16 14 12 18 18 H 1.48507 * 109.46904 * 209.99987 * 16 14 12 19 19 H 1.48498 * 109.47118 * 329.99645 * 16 14 12 20 20 C 1.52997 * 109.47092 * 299.99940 * 11 10 9 21 21 C 1.52993 * 109.47378 * 154.99917 * 8 7 6 22 22 C 1.47952 * 111.00196 * 75.63541 * 4 2 1 23 23 H 1.09000 * 109.47011 * 299.99808 * 1 2 3 24 24 H 1.09004 * 109.47174 * 59.99445 * 1 2 3 25 25 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46922 * 240.00741 * 2 1 3 27 27 H 1.09001 * 109.47201 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47243 * 300.00341 * 3 2 1 29 29 H 1.09000 * 109.46942 * 60.00150 * 3 2 1 30 30 H 1.09001 * 113.76532 * 108.09908 * 5 4 2 31 31 H 1.09003 * 113.76025 * 336.72353 * 5 4 2 32 32 H 1.09003 * 113.73191 * 269.25121 * 6 5 4 33 33 H 1.00902 * 111.00001 * 278.94403 * 7 6 5 34 34 H 1.09000 * 109.47033 * 34.99658 * 8 7 6 35 35 H 1.09000 * 109.47140 * 299.99770 * 9 8 7 36 36 H 1.09001 * 109.47375 * 59.99788 * 9 8 7 37 37 H 1.09004 * 109.47552 * 300.00012 * 10 9 8 38 38 H 1.09004 * 109.47298 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47312 * 60.00061 * 11 10 9 40 40 H 0.97003 * 119.99476 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47140 * 300.00226 * 20 11 10 42 42 H 1.09001 * 109.47375 * 180.02562 * 20 11 10 43 43 H 1.09004 * 109.46862 * 299.99897 * 21 8 7 44 44 H 1.09004 * 109.46998 * 59.99419 * 21 8 7 45 45 H 1.09008 * 113.75892 * 23.27001 * 22 4 2 46 46 H 1.08995 * 113.76123 * 251.90354 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4938 -0.8174 1.1748 6 6 3.2776 -2.2535 1.6853 7 7 4.1453 -3.2475 1.0394 8 6 4.3447 -4.4157 1.9075 9 6 5.4945 -4.1394 2.8782 10 6 5.7018 -5.3558 3.7828 11 6 6.0403 -6.5770 2.9255 12 6 6.2439 -7.7754 3.8165 13 1 5.6160 -8.6466 3.7015 14 6 7.2316 -7.7594 4.7783 15 7 7.9964 -6.6987 4.9179 16 14 7.4834 -9.2445 5.8831 17 1 8.4577 -10.1709 5.2526 18 1 8.0050 -8.7988 7.2002 19 1 6.1877 -9.9442 6.0748 20 6 4.8904 -6.8533 1.9549 21 6 4.6834 -5.6365 1.0500 22 6 1.8734 -2.1585 1.0620 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 4.0014 -0.1691 1.8891 31 1 3.9222 -0.7671 0.1738 32 1 3.2723 -2.3366 2.7722 33 1 3.7743 -3.5228 0.1424 34 1 3.4320 -4.6095 2.4711 35 1 6.4072 -3.9456 2.3146 36 1 5.2533 -3.2696 3.4892 37 1 4.7891 -5.5492 4.3464 38 1 6.5213 -5.1591 4.4741 39 1 6.9530 -6.3837 2.3619 40 1 8.6911 -6.6874 5.5949 41 1 3.9777 -7.0467 2.5185 42 1 5.1313 -7.7236 1.3444 43 1 3.8641 -5.8334 0.3584 44 1 5.5960 -5.4427 0.4863 45 1 1.8279 -2.5003 0.0279 46 1 1.0864 -2.5816 1.6861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = -8.883321 kcal Electronic energy + Delta-G solvation = -20842.712654 eV Core-core repulsion = 17959.175521 eV Total energy + Delta-G solvation = -2883.537133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25207 -39.39634 -36.23220 -34.76142 -33.28199 -31.37664 -29.97969 -28.62582 -27.04197 -26.37847 -25.63250 -23.37277 -22.19816 -21.17061 -20.85687 -20.24377 -18.38121 -17.31488 -16.91025 -16.61204 -16.14325 -15.74491 -15.20970 -14.98027 -14.82181 -14.65891 -14.40389 -13.94236 -13.74103 -13.31906 -13.15833 -13.03887 -12.94981 -12.88511 -12.76628 -12.60731 -12.50033 -12.33986 -12.05768 -11.90359 -11.83698 -11.71611 -11.56055 -11.33547 -11.12811 -10.71796 -10.49097 -10.34538 -9.79337 -9.27423 -8.05272 -6.19467 1.41049 1.41778 1.51805 2.44578 2.85047 3.20089 3.24743 3.59687 3.89574 3.98934 4.01921 4.04877 4.16657 4.24804 4.43487 4.47074 4.47786 4.61459 4.66722 4.70734 4.78209 4.84887 4.86051 4.88311 4.91477 4.93252 4.97358 5.00247 5.06870 5.11197 5.16633 5.20175 5.33845 5.38289 5.44473 5.50559 5.52450 5.64039 5.73512 6.06738 6.14476 6.16925 6.23861 6.44189 6.55596 6.94092 7.48471 8.98460 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.003319 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.150448 B = 8435.520429 C = 8634.191770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 C -0.142 4.142 4 N -0.486 5.486 5 C 0.019 3.981 6 C 0.062 3.938 7 N -0.675 5.675 8 C 0.105 3.895 9 C -0.091 4.091 10 C -0.101 4.101 11 C 0.045 3.955 12 C -0.535 4.535 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.016 4.016 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.348 0.652 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.024 0.976 38 H 0.055 0.945 39 H -0.009 1.009 40 H 0.259 0.741 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 12.832 -11.046 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.199 4.199 4 N -0.210 5.210 5 C -0.110 4.110 6 C -0.049 4.049 7 N -0.306 5.306 8 C -0.005 4.005 9 C -0.129 4.129 10 C -0.140 4.140 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.146 4.146 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.084 13.566 -10.238 21.449 hybrid contribution 0.103 -1.579 0.160 1.590 sum -12.982 11.987 -10.078 20.342 Atomic orbital electron populations 1.21728 0.93538 1.01850 1.02375 1.22246 0.96848 0.96207 0.91580 1.21791 1.00903 0.94728 1.02499 1.68534 1.08722 1.07635 1.36093 1.23994 0.89868 0.95767 1.01390 1.23458 0.90113 0.92503 0.98846 1.60397 1.51027 1.13094 1.06065 1.21336 0.96523 0.89143 0.93459 1.21429 0.97778 0.96962 0.96742 1.21404 0.99104 0.95018 0.98435 1.18625 0.92669 0.93204 0.92816 1.21657 1.16421 1.01522 1.17714 0.93116 1.25753 0.95738 0.98509 0.98798 1.70035 1.20917 1.29739 1.34962 0.85666 0.78416 0.79968 0.78266 1.20210 1.20993 1.19300 1.21467 0.98520 0.96731 0.97065 1.21631 1.01537 0.93931 0.97419 1.24633 0.98798 0.90354 1.00857 0.92552 0.90955 0.93066 0.93435 0.92918 0.90869 0.92493 0.89850 0.90450 0.89328 0.83135 0.94290 0.93808 0.93574 0.95714 0.92638 0.99082 0.93190 0.93441 0.93368 0.90527 0.92385 0.90107 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.32 71.98 0.67 -1.34 16 2 C 0.04 0.67 2.27 44.92 0.10 0.77 16 3 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 4 N -0.49 -9.85 5.98 -883.09 -5.28 -15.13 16 5 C 0.02 0.41 6.64 86.41 0.57 0.98 16 6 C 0.06 1.46 4.06 46.48 0.19 1.65 16 7 N -0.67 -17.31 6.44 -473.37 -3.05 -20.36 16 8 C 0.10 3.33 2.34 44.91 0.11 3.43 16 9 C -0.09 -3.57 5.42 30.59 0.17 -3.41 16 10 C -0.10 -4.88 4.98 30.59 0.15 -4.73 16 11 C 0.05 2.29 2.10 -11.54 -0.02 2.27 16 12 C -0.53 -30.01 8.56 25.60 0.22 -29.79 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.58 5.30 84.65 0.45 1.03 16 15 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 16 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.10 -4.04 5.14 30.61 0.16 -3.88 16 21 C -0.11 -3.46 5.20 30.61 0.16 -3.31 16 22 C -0.02 -0.31 6.97 86.41 0.60 0.29 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.05 0.76 7.73 -2.39 -0.02 0.75 16 26 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 27 H 0.05 0.82 7.33 -2.39 -0.02 0.80 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.56 7.85 -2.39 -0.02 1.54 16 32 H 0.09 2.40 7.50 -2.39 -0.02 2.39 16 33 H 0.35 7.55 7.81 -89.69 -0.70 6.85 16 34 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.72 7.75 -2.39 -0.02 1.71 16 37 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 1.98 8.12 -2.38 -0.02 1.96 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 1.38 7.37 -2.38 -0.02 1.36 16 46 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -60.39 348.88 -1.66 -62.05 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.21 Total: 18.47 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.18 Total: -37.49 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -8.08 Total: -89.38 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.39 -1.66 -62.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.164 kcal (2) G-P(sol) polarization free energy of solvation -60.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds