Wall clock time and date at job start Mon Mar 30 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46893 * 269.99967 * 3 2 1 5 5 H 1.48500 * 109.47058 * 30.00204 * 3 2 1 6 6 H 1.48494 * 109.47119 * 150.00384 * 3 2 1 7 7 C 1.37882 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99773 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99599 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46450 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47157 * 300.00219 * 11 10 9 13 13 N 1.46905 * 109.47152 * 180.02562 * 12 11 10 14 14 C 1.46894 * 111.00182 * 85.91011 * 13 12 11 15 15 H 1.09003 * 109.47430 * 326.74397 * 14 13 12 16 16 C 1.52995 * 109.47368 * 86.74382 * 14 13 12 17 17 C 1.53001 * 109.47271 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46922 * 300.00207 * 17 16 14 19 19 C 1.52995 * 109.47318 * 60.00382 * 18 17 16 20 20 H 1.08994 * 109.47469 * 179.97438 * 19 18 17 21 21 N 1.46900 * 109.47464 * 59.99192 * 19 18 17 22 22 C 1.53001 * 109.46812 * 299.99685 * 19 18 17 23 23 C 1.53000 * 109.47275 * 59.99621 * 12 11 10 24 24 C 1.52992 * 109.47398 * 299.99752 * 9 7 2 25 25 H 0.97003 * 119.99703 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47518 * 60.00486 * 9 7 2 27 27 H 1.08997 * 109.47560 * 60.00080 * 10 9 7 28 28 H 1.09000 * 109.47250 * 300.00064 * 10 9 7 29 29 H 1.08994 * 109.47294 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46617 * 60.00015 * 11 10 9 31 31 H 1.08997 * 109.46785 * 299.99528 * 12 11 10 32 32 H 1.00901 * 110.99966 * 209.86703 * 13 12 11 33 33 H 1.09000 * 109.46828 * 60.00183 * 16 14 13 34 34 H 1.08994 * 109.47467 * 300.00196 * 16 14 13 35 35 H 1.09005 * 109.47094 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46983 * 60.00353 * 17 16 14 37 37 H 1.09005 * 109.46993 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47411 * 299.99884 * 18 17 16 39 39 H 1.00905 * 110.99327 * 60.00517 * 21 19 18 40 40 H 1.00897 * 111.00152 * 183.95123 * 21 19 18 41 41 H 1.09000 * 109.46983 * 299.99925 * 22 19 18 42 42 H 1.09007 * 109.47231 * 180.02562 * 22 19 18 43 43 H 1.08995 * 109.46781 * 60.00327 * 23 12 11 44 44 H 1.08997 * 109.46684 * 179.97438 * 23 12 11 45 45 H 1.09001 * 109.47790 * 300.00732 * 24 9 7 46 46 H 1.09006 * 109.47047 * 60.00757 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5515 -2.6366 -0.0035 12 6 6.0605 -1.9146 -1.2527 13 7 7.5295 -1.9152 -1.2542 14 6 8.0549 -3.1485 -1.8549 15 1 7.3828 -3.9768 -1.6307 16 6 8.1598 -2.9729 -3.3711 17 6 8.7076 -4.2572 -3.9966 18 6 10.0935 -4.5542 -3.4205 19 6 9.9887 -4.7299 -1.9043 20 1 10.9759 -4.9419 -1.4939 21 7 9.0832 -5.8465 -1.6022 22 6 9.4409 -3.4455 -1.2788 23 6 5.5505 -0.4721 -1.2516 24 6 4.0210 -0.4725 -1.2503 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.6578 -3.1498 -0.8924 28 1 3.6585 -3.1510 0.8875 29 1 5.9148 -3.6642 -0.0039 30 1 5.9155 -2.1232 0.8865 31 1 5.6965 -2.4280 -2.1427 32 1 7.8910 -1.1003 -1.7269 33 1 8.8319 -2.1446 -3.5953 34 1 7.1725 -2.7609 -3.7815 35 1 8.7827 -4.1319 -5.0768 36 1 8.0357 -5.0858 -3.7725 37 1 10.4840 -5.4689 -3.8665 38 1 10.7654 -3.7256 -3.6447 39 1 9.4234 -6.7069 -2.0048 40 1 8.9466 -5.9421 -0.6071 41 1 10.1127 -2.6170 -1.5030 42 1 9.3666 -3.5705 -0.1985 43 1 5.9145 0.0412 -0.3617 44 1 5.9135 0.0422 -2.1414 45 1 3.6574 -0.9860 -2.1404 46 1 3.6577 0.5552 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:10 Heat of formation + Delta-G solvation = -31.824188 kcal Electronic energy + Delta-G solvation = -21426.899573 eV Core-core repulsion = 18542.367650 eV Total energy + Delta-G solvation = -2884.531923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.48615 -37.89852 -34.87189 -32.80664 -32.05626 -30.25758 -29.97178 -28.56674 -27.35079 -23.95728 -22.44305 -22.32741 -21.29607 -20.37001 -19.31629 -18.78346 -16.56280 -16.17893 -15.97844 -15.36607 -14.81901 -14.63171 -14.43954 -13.85407 -13.50696 -13.27159 -13.08389 -12.90801 -12.52975 -12.45214 -12.38984 -12.00586 -11.72036 -11.44960 -11.36514 -11.03287 -10.90778 -10.72997 -10.60865 -10.41798 -10.37329 -10.24968 -9.91018 -9.73369 -9.47043 -8.90914 -8.84017 -8.78590 -8.44636 -8.09734 -6.00406 -3.98355 3.31698 3.42780 3.45913 4.20295 4.33174 4.47613 4.65450 4.71006 4.93421 5.10469 5.21405 5.29337 5.32722 5.35338 5.39321 5.47138 5.54631 5.60072 5.72039 5.83350 5.88495 5.96056 6.04822 6.07758 6.11557 6.18077 6.23901 6.29894 6.31164 6.33074 6.44498 6.48312 6.63138 6.77394 6.85231 6.96127 7.01673 7.12924 7.24374 7.37733 7.42594 7.65800 7.69276 7.87350 8.61552 9.04766 9.63227 11.13197 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.004178 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.371010 B = 6700.512797 C = 6909.406664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.072 0.928 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.102 4.102 12 C 0.095 3.905 13 N -0.688 5.688 14 C 0.096 3.904 15 H 0.091 0.909 16 C -0.145 4.145 17 C -0.106 4.106 18 C -0.111 4.111 19 C 0.091 3.909 20 H 0.031 0.969 21 N -0.842 5.842 22 C -0.099 4.099 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.333 0.667 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.337 0.663 40 H 0.342 0.658 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.680 -8.148 -5.709 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.090 0.910 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.014 4.014 13 N -0.317 5.317 14 C -0.014 4.014 15 H 0.109 0.891 16 C -0.185 4.185 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.021 4.021 20 H 0.049 0.951 21 N -0.372 5.372 22 C -0.137 4.137 23 C -0.160 4.160 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.025 -7.838 -5.456 23.093 hybrid contribution 1.024 0.791 -0.598 1.426 sum 22.049 -7.047 -6.054 23.927 Atomic orbital electron populations 1.69910 1.06312 1.26774 1.51383 1.25040 0.94665 0.99044 0.94631 0.86833 0.79976 0.83598 0.77740 1.20792 1.22731 1.18943 1.21130 0.89145 0.94330 1.50255 0.90987 1.19143 0.96220 0.92078 0.93009 1.21442 0.92533 0.98880 1.00833 1.21556 0.96548 0.98722 0.97214 1.21498 0.85666 0.96447 0.97797 1.60662 1.08295 1.03981 1.58756 1.21478 0.96133 0.93335 0.90469 0.89081 1.22234 1.00772 0.97832 0.97621 1.21332 0.96534 0.98330 0.98272 1.21560 0.97807 1.00958 0.94619 1.21333 0.93136 0.91977 0.95623 0.95115 1.58699 1.52665 1.07345 1.18528 1.21517 0.96580 0.95547 1.00072 1.21780 0.98192 0.95263 1.00729 1.21917 0.91860 1.00170 1.01459 0.92824 0.95607 0.93092 0.92737 0.93356 0.92176 0.94063 0.84901 0.92650 0.92241 0.93025 0.90621 0.92522 0.91965 0.85092 0.84499 0.92021 0.91598 0.91912 0.93665 0.92424 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.96 55.43 0.77 -27.44 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 3 Si 0.89 22.47 24.37 -169.99 -4.14 18.33 16 4 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.51 -14.58 9.14 -34.44 -0.31 -14.89 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.34 1.70 -91.77 -0.16 0.18 16 10 C -0.10 -2.01 5.14 -26.73 -0.14 -2.15 16 11 C -0.10 -1.76 5.42 -26.73 -0.14 -1.90 16 12 C 0.09 1.52 2.30 -67.71 -0.16 1.36 16 13 N -0.69 -9.26 6.07 -99.74 -0.60 -9.87 16 14 C 0.10 1.13 2.11 -67.72 -0.14 0.99 16 15 H 0.09 1.25 6.65 -51.93 -0.35 0.90 16 16 C -0.15 -1.59 5.16 -26.73 -0.14 -1.73 16 17 C -0.11 -1.03 5.77 -26.73 -0.15 -1.18 16 18 C -0.11 -0.93 5.61 -26.73 -0.15 -1.08 16 19 C 0.09 0.77 3.57 -67.71 -0.24 0.53 16 20 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 21 N -0.84 -6.84 7.72 -4.67 -0.04 -6.88 16 22 C -0.10 -1.00 5.18 -26.73 -0.14 -1.14 16 23 C -0.12 -2.15 5.19 -26.76 -0.14 -2.29 16 24 C -0.12 -2.53 4.68 -26.76 -0.13 -2.65 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.69 7.24 -51.93 -0.38 0.31 16 32 H 0.33 4.22 8.04 -39.29 -0.32 3.90 16 33 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.06 0.73 7.57 -51.93 -0.39 0.33 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.81 7.60 -51.93 -0.39 0.42 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.34 2.22 9.04 -39.29 -0.36 1.87 16 40 H 0.34 2.63 8.99 -39.29 -0.35 2.28 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -29.87 334.25 -9.77 -39.64 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.56 Total: 5.26 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.23 Total: -24.07 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.13 Total: -44.19 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.87 -9.77 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.817 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds