Wall clock time and date at job start Mon Mar 30 2020 00:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46893 * 269.99967 * 3 2 1 5 5 H 1.48500 * 109.47058 * 30.00204 * 3 2 1 6 6 H 1.48494 * 109.47119 * 150.00384 * 3 2 1 7 7 C 1.37882 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99773 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99599 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46450 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47157 * 300.00219 * 11 10 9 13 13 N 1.46905 * 109.47152 * 180.02562 * 12 11 10 14 14 C 1.46894 * 111.00182 * 85.91011 * 13 12 11 15 15 H 1.09003 * 109.47430 * 326.74397 * 14 13 12 16 16 C 1.52995 * 109.47368 * 86.74382 * 14 13 12 17 17 C 1.53001 * 109.47271 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46922 * 300.00207 * 17 16 14 19 19 C 1.52995 * 109.47318 * 60.00382 * 18 17 16 20 20 H 1.08994 * 109.47469 * 179.97438 * 19 18 17 21 21 N 1.46900 * 109.47464 * 59.99192 * 19 18 17 22 22 C 1.53001 * 109.46812 * 299.99685 * 19 18 17 23 23 C 1.53000 * 109.47275 * 59.99621 * 12 11 10 24 24 C 1.52992 * 109.47398 * 299.99752 * 9 7 2 25 25 H 0.97003 * 119.99703 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47518 * 60.00486 * 9 7 2 27 27 H 1.08997 * 109.47560 * 60.00080 * 10 9 7 28 28 H 1.09000 * 109.47250 * 300.00064 * 10 9 7 29 29 H 1.08994 * 109.47294 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46617 * 60.00015 * 11 10 9 31 31 H 1.08997 * 109.46785 * 299.99528 * 12 11 10 32 32 H 1.00901 * 110.99966 * 209.86703 * 13 12 11 33 33 H 1.09000 * 109.46828 * 60.00183 * 16 14 13 34 34 H 1.08994 * 109.47467 * 300.00196 * 16 14 13 35 35 H 1.09005 * 109.47094 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46983 * 60.00353 * 17 16 14 37 37 H 1.09005 * 109.46993 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47411 * 299.99884 * 18 17 16 39 39 H 1.00905 * 110.99327 * 60.00517 * 21 19 18 40 40 H 1.00897 * 111.00152 * 183.95123 * 21 19 18 41 41 H 1.09000 * 109.46983 * 299.99925 * 22 19 18 42 42 H 1.09007 * 109.47231 * 180.02562 * 22 19 18 43 43 H 1.08995 * 109.46781 * 60.00327 * 23 12 11 44 44 H 1.08997 * 109.46684 * 179.97438 * 23 12 11 45 45 H 1.09001 * 109.47790 * 300.00732 * 24 9 7 46 46 H 1.09006 * 109.47047 * 60.00757 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5515 -2.6366 -0.0035 12 6 6.0605 -1.9146 -1.2527 13 7 7.5295 -1.9152 -1.2542 14 6 8.0549 -3.1485 -1.8549 15 1 7.3828 -3.9768 -1.6307 16 6 8.1598 -2.9729 -3.3711 17 6 8.7076 -4.2572 -3.9966 18 6 10.0935 -4.5542 -3.4205 19 6 9.9887 -4.7299 -1.9043 20 1 10.9759 -4.9419 -1.4939 21 7 9.0832 -5.8465 -1.6022 22 6 9.4409 -3.4455 -1.2788 23 6 5.5505 -0.4721 -1.2516 24 6 4.0210 -0.4725 -1.2503 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.6578 -3.1498 -0.8924 28 1 3.6585 -3.1510 0.8875 29 1 5.9148 -3.6642 -0.0039 30 1 5.9155 -2.1232 0.8865 31 1 5.6965 -2.4280 -2.1427 32 1 7.8910 -1.1003 -1.7269 33 1 8.8319 -2.1446 -3.5953 34 1 7.1725 -2.7609 -3.7815 35 1 8.7827 -4.1319 -5.0768 36 1 8.0357 -5.0858 -3.7725 37 1 10.4840 -5.4689 -3.8665 38 1 10.7654 -3.7256 -3.6447 39 1 9.4234 -6.7069 -2.0048 40 1 8.9466 -5.9421 -0.6071 41 1 10.1127 -2.6170 -1.5030 42 1 9.3666 -3.5705 -0.1985 43 1 5.9145 0.0412 -0.3617 44 1 5.9135 0.0422 -2.1414 45 1 3.6574 -0.9860 -2.1404 46 1 3.6577 0.5552 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:09 Heat of formation + Delta-G solvation = -52.559117 kcal Electronic energy + Delta-G solvation = -21427.798707 eV Core-core repulsion = 18542.367650 eV Total energy + Delta-G solvation = -2885.431057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48755 -39.21076 -36.14822 -34.42317 -33.26847 -31.69685 -31.44447 -29.43641 -28.54940 -25.79067 -23.80964 -23.15154 -22.50797 -21.80728 -20.56260 -19.95607 -18.74087 -17.19908 -16.91618 -16.61419 -16.05411 -15.56660 -15.46907 -15.25350 -14.94241 -14.88409 -14.47917 -14.21785 -14.10867 -13.43502 -13.38158 -13.18803 -13.02781 -12.86071 -12.71121 -12.55653 -12.18287 -11.98477 -11.83825 -11.75955 -11.63417 -11.53070 -11.29394 -11.26012 -11.08929 -10.88915 -10.69531 -10.48715 -9.43435 -9.16496 -8.28740 -6.31743 1.29964 1.36178 1.47458 2.33740 3.06687 3.18533 3.67777 3.85364 3.92455 3.99160 4.00852 4.15977 4.35287 4.35403 4.44984 4.48297 4.54158 4.58591 4.66893 4.74861 4.75344 4.77163 4.78808 4.82619 4.87807 5.01153 5.06607 5.11728 5.15619 5.25673 5.28286 5.33844 5.36304 5.39470 5.43950 5.51048 5.57811 5.63046 5.73027 5.83429 6.27693 6.35100 6.37881 6.63297 6.71404 6.76063 7.33773 8.88533 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.004178 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.371010 B = 6700.512797 C = 6909.406664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.519 4.519 8 H 0.029 0.971 9 C 0.014 3.986 10 C -0.094 4.094 11 C -0.091 4.091 12 C 0.104 3.896 13 N -0.684 5.684 14 C 0.099 3.901 15 H 0.072 0.928 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.109 4.109 19 C 0.094 3.906 20 H 0.042 0.958 21 N -0.851 5.851 22 C -0.094 4.094 23 C -0.114 4.114 24 C -0.115 4.115 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.342 0.658 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.346 0.654 40 H 0.344 0.656 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.159 -7.582 -6.374 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.169 1.169 7 C -0.557 4.557 8 H 0.048 0.952 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.129 4.129 12 C -0.005 4.005 13 N -0.314 5.314 14 C -0.010 4.010 15 H 0.090 0.910 16 C -0.181 4.181 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.018 4.018 20 H 0.060 0.940 21 N -0.383 5.383 22 C -0.132 4.132 23 C -0.152 4.152 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 24.535 -7.296 -6.130 26.320 hybrid contribution -0.141 0.494 -0.384 0.642 sum 24.394 -6.801 -6.514 26.149 Atomic orbital electron populations 1.70064 1.08277 1.27923 1.53195 1.25925 0.95429 1.03121 0.94309 0.85781 0.79161 0.78510 0.78611 1.19288 1.22824 1.16932 1.21486 0.91964 0.92770 1.49516 0.95220 1.19110 0.92952 0.94489 0.93948 1.21347 0.95183 0.96596 1.00122 1.21420 0.93621 0.99931 0.97955 1.21271 0.87429 0.95131 0.96718 1.60610 1.06300 1.05106 1.59388 1.21452 0.96624 0.91824 0.91141 0.90958 1.22183 1.00214 0.98869 0.96855 1.21294 0.97122 0.97130 0.98678 1.21554 0.96922 1.01824 0.94349 1.21298 0.93518 0.91270 0.95689 0.93981 1.58691 1.52891 1.07857 1.18829 1.21471 0.95499 0.96685 0.99583 1.21688 0.94794 0.96611 1.02092 1.21787 0.95077 0.98758 0.99645 0.92668 0.96082 0.93877 0.93552 0.91928 0.92209 0.94729 0.83901 0.91654 0.93850 0.92416 0.91956 0.91436 0.91194 0.84109 0.84297 0.91373 0.92354 0.91674 0.91130 0.93187 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 2 C 0.01 0.50 5.45 84.66 0.46 0.97 16 3 Si 0.95 46.32 24.37 68.60 1.67 47.99 16 4 H -0.27 -12.30 6.87 99.48 0.68 -11.62 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 7 C -0.52 -30.61 9.14 25.60 0.23 -30.38 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.01 0.65 1.70 -11.54 -0.02 0.64 16 10 C -0.09 -3.85 5.14 30.60 0.16 -3.69 16 11 C -0.09 -2.99 5.42 30.59 0.17 -2.82 16 12 C 0.10 3.10 2.30 44.91 0.10 3.21 16 13 N -0.68 -16.48 6.07 -469.48 -2.85 -19.33 16 14 C 0.10 2.11 2.11 44.92 0.09 2.20 16 15 H 0.07 1.85 6.65 -2.39 -0.02 1.83 16 16 C -0.14 -2.78 5.16 30.59 0.16 -2.62 16 17 C -0.10 -1.78 5.77 30.60 0.18 -1.61 16 18 C -0.11 -1.48 5.61 30.59 0.17 -1.31 16 19 C 0.09 1.34 3.57 44.91 0.16 1.50 16 20 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 21 N -0.85 -12.12 7.72 -168.69 -1.30 -13.42 16 22 C -0.09 -1.64 5.18 30.60 0.16 -1.48 16 23 C -0.11 -3.71 5.19 30.58 0.16 -3.55 16 24 C -0.11 -4.83 4.68 30.57 0.14 -4.69 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.89 7.52 -2.39 -0.02 1.87 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 1.10 7.24 -2.39 -0.02 1.08 16 32 H 0.34 7.44 8.04 -89.69 -0.72 6.72 16 33 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 34 H 0.04 0.98 7.57 -2.39 -0.02 0.97 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.06 1.24 7.60 -2.39 -0.02 1.22 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.35 3.85 9.04 -89.69 -0.81 3.04 16 40 H 0.34 4.67 8.99 -89.70 -0.81 3.87 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 45 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.03 1.51 3.27 -2.38 -0.01 1.50 16 Total: -1.00 -65.69 334.25 -1.31 -67.00 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -1.46 Total: 22.47 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.32 Total: -43.65 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -3.85 Total: -93.81 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 47.99 kcal Total: -65.69 -1.31 -67.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.443 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds