Wall clock time and date at job start Mon Mar 30 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99871 * 2 1 4 4 C 1.46893 * 110.99893 * 123.95251 * 2 1 3 5 5 C 1.52999 * 113.25955 * 47.05049 * 4 2 1 6 6 C 1.53517 * 114.17047 * 180.02562 * 4 2 1 7 7 N 1.47485 * 87.93137 * 87.81460 * 6 4 2 8 8 C 1.46901 * 110.99912 * 138.70333 * 7 6 4 9 9 C 1.53000 * 109.46769 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 C 1.50706 * 109.46953 * 60.00071 * 11 10 9 13 13 H 1.07998 * 119.99823 * 240.00260 * 12 11 10 14 14 C 1.37879 * 119.99661 * 60.00040 * 12 11 10 15 15 N 1.31510 * 120.00409 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99651 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47104 * 90.00232 * 16 14 12 18 18 H 1.48495 * 109.47249 * 209.99979 * 16 14 12 19 19 H 1.48499 * 109.47293 * 329.99987 * 16 14 12 20 20 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 11 10 22 22 C 1.47479 * 87.83575 * 27.01007 * 7 6 4 23 23 H 1.09001 * 109.47443 * 296.04299 * 1 2 3 24 24 H 1.09003 * 109.47547 * 56.04992 * 1 2 3 25 25 H 1.09007 * 109.47044 * 176.04356 * 1 2 3 26 26 H 1.08999 * 109.46860 * 183.95292 * 3 2 1 27 27 H 1.09000 * 109.46800 * 303.95096 * 3 2 1 28 28 H 1.08996 * 109.47261 * 63.95365 * 3 2 1 29 29 H 1.09001 * 109.47552 * 192.94615 * 5 4 2 30 30 H 1.09000 * 109.47250 * 312.95117 * 5 4 2 31 31 H 1.09002 * 109.47059 * 72.94731 * 5 4 2 32 32 H 1.08994 * 113.47703 * 333.04864 * 6 4 2 33 33 H 1.09003 * 113.47535 * 202.57883 * 6 4 2 34 34 H 1.08992 * 109.47407 * 300.00028 * 8 7 6 35 35 H 1.09002 * 109.47398 * 300.00295 * 9 8 7 36 36 H 1.09001 * 109.47194 * 60.00475 * 9 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.09000 * 109.47486 * 180.02562 * 11 10 9 40 40 H 0.96998 * 120.00365 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.46935 * 299.99411 * 20 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 20 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 20 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 20 11 45 45 H 1.09001 * 113.47458 * 87.75601 * 22 7 6 46 46 H 1.08994 * 113.47798 * 218.21980 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.3178 -2.1261 1.3155 6 6 3.5282 -0.8128 1.2084 7 7 3.4775 0.4417 1.9821 8 6 4.4376 0.4138 3.0937 9 6 4.3563 1.7292 3.8708 10 6 5.3567 1.7005 5.0281 11 6 6.7718 1.5216 4.4747 12 6 7.1004 2.6695 3.5552 13 1 7.3429 2.4797 2.5200 14 6 7.0914 3.9619 4.0355 15 7 6.7965 4.1929 5.2961 16 14 7.4979 5.3847 2.8955 17 1 6.2519 5.8780 2.2556 18 1 8.1210 6.4829 3.6772 19 1 8.4440 4.9246 1.8475 20 6 6.8530 0.2062 3.6975 21 6 5.8527 0.2350 2.5402 22 6 2.1322 0.0423 2.4355 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3432 -0.0708 27 1 1.5897 1.9163 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5808 -2.5385 2.2896 30 1 0.2364 -2.0043 1.2524 31 1 1.6533 -2.8046 0.5312 32 1 4.0112 -0.7048 0.2373 33 1 3.9108 -1.6595 1.7784 34 1 4.1998 -0.4166 3.7584 35 1 4.5944 2.5594 3.2058 36 1 3.3480 1.8568 4.2648 37 1 5.2986 2.6373 5.5821 38 1 5.1190 0.8702 5.6932 39 1 7.4844 1.5006 5.2993 40 1 6.7898 5.1021 5.6340 41 1 6.6154 -0.6241 4.3626 42 1 7.8611 0.0790 3.3029 43 1 5.9109 -0.7019 1.9862 44 1 6.0904 1.0653 1.8752 45 1 2.1424 -0.5762 3.3331 46 1 1.4322 0.8749 2.5045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:45 Heat of formation + Delta-G solvation = 38.812789 kcal Electronic energy + Delta-G solvation = -22118.303762 eV Core-core repulsion = 19236.834888 eV Total energy + Delta-G solvation = -2881.468874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97434 -37.57614 -35.23203 -32.41889 -30.93864 -29.69918 -29.01638 -27.00867 -25.81903 -25.09939 -24.18966 -22.93759 -21.27123 -20.09714 -18.84193 -18.29445 -16.28211 -15.69218 -15.57081 -14.91237 -14.68511 -14.39510 -14.11252 -14.03738 -13.27349 -13.08335 -12.71435 -12.61223 -12.38804 -12.29058 -12.06894 -11.72630 -11.54148 -11.36463 -11.25200 -11.04275 -10.92846 -10.82326 -10.69242 -10.52245 -10.24690 -10.18502 -10.03717 -9.57511 -9.10676 -8.82846 -8.56312 -8.44566 -8.21212 -8.18186 -5.91015 -3.94618 3.35113 3.41846 3.45107 3.86936 4.27965 4.43618 4.50360 4.90605 5.13635 5.24315 5.37991 5.40899 5.43627 5.54017 5.59064 5.62446 5.67156 5.71346 5.73693 5.78654 5.84901 5.95801 6.02046 6.05968 6.12648 6.26484 6.34170 6.45750 6.53594 6.59902 6.67898 6.78521 6.84644 6.91411 7.10950 7.14072 7.18032 7.24712 7.40892 7.58003 7.70409 7.80222 7.98729 8.20972 8.54715 9.07310 9.68392 11.15094 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.005544 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.592818 B = 5049.212865 C = 5570.737224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.515 5.515 3 C 0.030 3.970 4 C 0.079 3.921 5 C -0.136 4.136 6 C 0.011 3.989 7 N -0.458 5.458 8 C 0.060 3.940 9 C -0.083 4.083 10 C -0.107 4.107 11 C 0.044 3.956 12 C -0.496 4.496 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.098 4.098 22 C -0.027 4.027 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.091 0.909 38 H 0.010 0.990 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.030 0.970 42 H 0.047 0.953 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -10.222 -7.112 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.238 5.238 3 C -0.117 4.117 4 C -0.012 4.012 5 C -0.194 4.194 6 C -0.118 4.118 7 N -0.180 5.180 8 C -0.048 4.048 9 C -0.121 4.121 10 C -0.145 4.145 11 C 0.025 3.975 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.712 3.288 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.158 4.158 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.110 0.890 38 H 0.028 0.972 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.098 -9.623 -7.737 16.602 hybrid contribution -0.137 0.571 0.766 0.965 sum -11.236 -9.052 -6.971 16.024 Atomic orbital electron populations 1.22425 0.88079 1.01907 1.00324 1.61985 1.07104 1.15023 1.39677 1.22440 1.02478 0.87181 0.99649 1.22361 0.95773 0.93827 0.89271 1.21775 1.00584 0.95159 1.01874 1.23869 0.94468 0.93288 1.00171 1.69130 1.01615 1.30459 1.16794 1.22262 0.92882 0.98470 0.91227 1.21263 0.96850 0.96092 0.97902 1.21518 0.96341 1.00959 0.95726 1.18689 0.93088 0.90922 0.94759 1.21130 1.45407 0.90858 0.96078 0.92706 1.24920 0.95519 0.98656 0.94840 1.69865 1.49655 1.20175 1.13575 0.86720 0.78544 0.82537 0.80977 1.20778 1.21467 1.20035 1.21546 0.97270 0.99007 0.96542 1.21444 0.93337 1.00168 0.98596 1.24468 0.94483 0.99268 0.97614 0.95721 0.91589 0.91276 0.89402 0.92902 0.94629 0.92074 0.92031 0.91643 0.89552 0.91281 0.95043 0.90415 0.95547 0.89028 0.97166 0.95888 0.93248 0.95124 0.93439 0.94717 0.90442 0.91467 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.95 60.06 0.54 0.75 16 2 N -0.52 -6.44 5.11 -235.08 -1.20 -7.64 16 3 C 0.03 0.41 8.27 60.07 0.50 0.91 16 4 C 0.08 0.97 1.37 -131.39 -0.18 0.79 16 5 C -0.14 -1.35 9.00 37.16 0.33 -1.01 16 6 C 0.01 0.16 5.17 -7.54 -0.04 0.12 16 7 N -0.46 -7.40 4.08 -236.55 -0.96 -8.36 16 8 C 0.06 1.10 1.60 -67.71 -0.11 0.99 16 9 C -0.08 -1.78 5.20 -26.73 -0.14 -1.92 16 10 C -0.11 -2.53 5.23 -26.73 -0.14 -2.67 16 11 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 12 C -0.50 -13.30 6.61 -34.44 -0.23 -13.52 16 13 H 0.05 1.47 6.71 -52.49 -0.35 1.12 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 16 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 21 C -0.10 -1.88 4.87 -26.73 -0.13 -2.01 16 22 C -0.03 -0.38 6.10 -7.54 -0.05 -0.43 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 25 H 0.07 0.62 6.24 -51.93 -0.32 0.29 16 26 H 0.09 1.35 6.51 -51.93 -0.34 1.01 16 27 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.04 0.52 6.24 -51.93 -0.32 0.20 16 29 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 30 H 0.06 0.55 5.96 -51.93 -0.31 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.24 7.96 -51.93 -0.41 0.83 16 33 H 0.07 0.92 7.62 -51.93 -0.40 0.53 16 34 H 0.03 0.57 7.52 -51.93 -0.39 0.18 16 35 H 0.08 1.89 7.22 -51.93 -0.37 1.52 16 36 H 0.03 0.53 8.04 -51.93 -0.42 0.12 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.59 7.03 -51.93 -0.37 0.23 16 44 H 0.08 1.66 6.62 -51.93 -0.34 1.32 16 45 H 0.07 0.93 7.33 -51.93 -0.38 0.55 16 46 H 0.08 1.12 6.91 -51.93 -0.36 0.76 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -27.51 332.32 -10.00 -37.51 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.33 Total: -0.21 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -0.12 Total: -17.93 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -1.54 Total: -40.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.51 -10.00 -37.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.320 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds