Wall clock time and date at job start Mon Mar 30 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99871 * 2 1 4 4 C 1.46893 * 110.99893 * 123.95251 * 2 1 3 5 5 C 1.52999 * 113.25955 * 47.05049 * 4 2 1 6 6 C 1.53517 * 114.17047 * 180.02562 * 4 2 1 7 7 N 1.47485 * 87.93137 * 87.81460 * 6 4 2 8 8 C 1.46901 * 110.99912 * 138.70333 * 7 6 4 9 9 C 1.53000 * 109.46769 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 C 1.50706 * 109.46953 * 60.00071 * 11 10 9 13 13 H 1.07998 * 119.99823 * 240.00260 * 12 11 10 14 14 C 1.37879 * 119.99661 * 60.00040 * 12 11 10 15 15 N 1.31510 * 120.00409 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99651 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47104 * 90.00232 * 16 14 12 18 18 H 1.48495 * 109.47249 * 209.99979 * 16 14 12 19 19 H 1.48499 * 109.47293 * 329.99987 * 16 14 12 20 20 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 11 10 22 22 C 1.47479 * 87.83575 * 27.01007 * 7 6 4 23 23 H 1.09001 * 109.47443 * 296.04299 * 1 2 3 24 24 H 1.09003 * 109.47547 * 56.04992 * 1 2 3 25 25 H 1.09007 * 109.47044 * 176.04356 * 1 2 3 26 26 H 1.08999 * 109.46860 * 183.95292 * 3 2 1 27 27 H 1.09000 * 109.46800 * 303.95096 * 3 2 1 28 28 H 1.08996 * 109.47261 * 63.95365 * 3 2 1 29 29 H 1.09001 * 109.47552 * 192.94615 * 5 4 2 30 30 H 1.09000 * 109.47250 * 312.95117 * 5 4 2 31 31 H 1.09002 * 109.47059 * 72.94731 * 5 4 2 32 32 H 1.08994 * 113.47703 * 333.04864 * 6 4 2 33 33 H 1.09003 * 113.47535 * 202.57883 * 6 4 2 34 34 H 1.08992 * 109.47407 * 300.00028 * 8 7 6 35 35 H 1.09002 * 109.47398 * 300.00295 * 9 8 7 36 36 H 1.09001 * 109.47194 * 60.00475 * 9 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.09000 * 109.47486 * 180.02562 * 11 10 9 40 40 H 0.96998 * 120.00365 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.46935 * 299.99411 * 20 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 20 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 20 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 20 11 45 45 H 1.09001 * 113.47458 * 87.75601 * 22 7 6 46 46 H 1.08994 * 113.47798 * 218.21980 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.3178 -2.1261 1.3155 6 6 3.5282 -0.8128 1.2084 7 7 3.4775 0.4417 1.9821 8 6 4.4376 0.4138 3.0937 9 6 4.3563 1.7292 3.8708 10 6 5.3567 1.7005 5.0281 11 6 6.7718 1.5216 4.4747 12 6 7.1004 2.6695 3.5552 13 1 7.3429 2.4797 2.5200 14 6 7.0914 3.9619 4.0355 15 7 6.7965 4.1929 5.2961 16 14 7.4979 5.3847 2.8955 17 1 6.2519 5.8780 2.2556 18 1 8.1210 6.4829 3.6772 19 1 8.4440 4.9246 1.8475 20 6 6.8530 0.2062 3.6975 21 6 5.8527 0.2350 2.5402 22 6 2.1322 0.0423 2.4355 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3432 -0.0708 27 1 1.5897 1.9163 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5808 -2.5385 2.2896 30 1 0.2364 -2.0043 1.2524 31 1 1.6533 -2.8046 0.5312 32 1 4.0112 -0.7048 0.2373 33 1 3.9108 -1.6595 1.7784 34 1 4.1998 -0.4166 3.7584 35 1 4.5944 2.5594 3.2058 36 1 3.3480 1.8568 4.2648 37 1 5.2986 2.6373 5.5821 38 1 5.1190 0.8702 5.6932 39 1 7.4844 1.5006 5.2993 40 1 6.7898 5.1021 5.6340 41 1 6.6154 -0.6241 4.3626 42 1 7.8611 0.0790 3.3029 43 1 5.9109 -0.7019 1.9862 44 1 6.0904 1.0653 1.8752 45 1 2.1424 -0.5762 3.3331 46 1 1.4322 0.8749 2.5045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:45 Heat of formation + Delta-G solvation = 21.982797 kcal Electronic energy + Delta-G solvation = -22119.033565 eV Core-core repulsion = 19236.834888 eV Total energy + Delta-G solvation = -2882.198677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11863 -39.19101 -36.46756 -34.31450 -32.20733 -31.38549 -30.42678 -28.11830 -26.99955 -26.83537 -25.41390 -24.17101 -22.98223 -21.63439 -20.55346 -19.44625 -17.80660 -17.23124 -16.89541 -16.56986 -15.97027 -15.69650 -15.44146 -15.18021 -14.84273 -14.74438 -14.31500 -13.76053 -13.54159 -13.34923 -13.24449 -13.19764 -12.90474 -12.79015 -12.72948 -12.52716 -12.46129 -12.35343 -12.20804 -12.10443 -11.85010 -11.68793 -11.45310 -11.32193 -10.87928 -10.69813 -10.46006 -10.28500 -9.66801 -9.18403 -8.03370 -6.12398 1.38942 1.40998 1.49219 2.45391 2.90870 3.11166 3.25283 3.44029 3.84535 3.96419 4.06181 4.21925 4.36291 4.44901 4.46840 4.57525 4.61367 4.61637 4.67451 4.72275 4.78291 4.81116 4.85363 4.86164 4.88233 4.91786 4.96541 4.97807 5.05550 5.11995 5.17613 5.30238 5.34981 5.40498 5.47624 5.54552 5.66471 5.67554 5.73561 5.96655 6.11792 6.19246 6.23004 6.30982 6.46189 6.96611 7.53108 9.01625 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.005544 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.592818 B = 5049.212865 C = 5570.737224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.038 3.962 4 C 0.090 3.910 5 C -0.131 4.131 6 C 0.011 3.989 7 N -0.476 5.476 8 C 0.071 3.929 9 C -0.071 4.071 10 C -0.101 4.101 11 C 0.038 3.962 12 C -0.501 4.501 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.939 3.061 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.269 1.269 20 C -0.100 4.100 21 C -0.089 4.089 22 C -0.028 4.028 23 H 0.022 0.978 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.025 0.975 39 H -0.011 1.011 40 H 0.256 0.744 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -12.094 -8.471 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.001 4.001 5 C -0.189 4.189 6 C -0.118 4.118 7 N -0.198 5.198 8 C -0.037 4.037 9 C -0.109 4.109 10 C -0.140 4.140 11 C 0.020 3.980 12 C -0.539 4.539 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.766 3.234 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.159 4.159 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.008 0.992 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.450 -11.505 -9.109 19.244 hybrid contribution 0.271 1.153 1.193 1.682 sum -12.179 -10.352 -7.916 17.837 Atomic orbital electron populations 1.22504 0.86380 1.03239 1.00597 1.62005 1.08629 1.14077 1.39668 1.22295 1.01224 0.88143 0.99364 1.22352 0.94953 0.94789 0.88045 1.21767 1.01104 0.93370 1.02662 1.23930 0.95919 0.92384 0.99546 1.69108 1.02089 1.32393 1.16227 1.22030 0.93218 0.96621 0.91867 1.21051 0.96254 0.96916 0.96720 1.21363 0.96487 0.99686 0.96469 1.18693 0.92771 0.92665 0.93916 1.21365 1.44714 0.91754 0.96070 0.93178 1.25588 0.95757 1.00970 0.96036 1.70003 1.50710 1.20412 1.14947 0.85840 0.78289 0.79870 0.79402 1.20698 1.21204 1.19388 1.21450 0.98057 0.97269 0.97040 1.21328 0.93299 1.00518 0.97542 1.24526 0.92998 0.99379 0.98989 0.95971 0.90753 0.89494 0.91501 0.91715 0.96201 0.91269 0.90790 0.90810 0.90162 0.90053 0.93862 0.93914 0.94910 0.92519 0.95632 0.99241 0.93448 0.93112 0.93423 0.91813 0.93126 0.90699 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.95 127.69 1.14 1.50 16 2 N -0.52 -11.85 5.11 -897.67 -4.59 -16.44 16 3 C 0.04 0.99 8.27 127.69 1.06 2.05 16 4 C 0.09 1.98 1.37 3.98 0.01 1.99 16 5 C -0.13 -2.10 9.00 71.98 0.65 -1.45 16 6 C 0.01 0.29 5.17 83.58 0.43 0.72 16 7 N -0.48 -14.77 4.08 -902.30 -3.68 -18.45 16 8 C 0.07 2.52 1.60 44.92 0.07 2.60 16 9 C -0.07 -3.08 5.20 30.59 0.16 -2.93 16 10 C -0.10 -4.88 5.23 30.59 0.16 -4.72 16 11 C 0.04 1.91 2.59 -11.54 -0.03 1.88 16 12 C -0.50 -27.44 6.61 25.60 0.17 -27.27 16 13 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 14 C 0.01 0.79 5.30 84.66 0.45 1.24 16 15 N -0.92 -54.08 11.32 21.45 0.24 -53.84 16 16 Si 0.94 44.88 29.54 68.60 2.03 46.91 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.10 -4.09 5.41 30.60 0.17 -3.93 16 21 C -0.09 -3.31 4.87 30.59 0.15 -3.16 16 22 C -0.03 -0.73 6.10 83.58 0.51 -0.22 16 23 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 25 H 0.09 1.23 6.24 -2.38 -0.01 1.21 16 26 H 0.07 2.03 6.51 -2.39 -0.02 2.02 16 27 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.02 0.57 6.24 -2.39 -0.01 0.55 16 29 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16 30 H 0.07 1.02 5.96 -2.39 -0.01 1.00 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 2.15 7.96 -2.39 -0.02 2.13 16 33 H 0.08 1.88 7.62 -2.39 -0.02 1.87 16 34 H 0.04 1.46 7.52 -2.39 -0.02 1.44 16 35 H 0.04 2.13 7.22 -2.39 -0.02 2.11 16 36 H 0.03 1.33 8.04 -2.39 -0.02 1.32 16 37 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 2.01 7.03 -2.39 -0.02 1.99 16 44 H 0.05 2.16 6.62 -2.39 -0.02 2.14 16 45 H 0.07 1.86 7.33 -2.39 -0.02 1.84 16 46 H 0.07 1.88 6.91 -2.39 -0.02 1.86 16 Total: -1.00 -60.34 332.32 0.02 -60.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.92 Total: 13.19 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 5.09 Total: -31.70 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -8.02 Total: -88.72 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -60.34 0.02 -60.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.305 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds