Wall clock time and date at job start Mon Mar 30 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00455 * 2 1 4 4 C 1.53000 * 109.47404 * 124.99683 * 3 2 1 5 5 C 1.52990 * 109.47293 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47401 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00110 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00563 * 180.02562 * 6 5 4 9 9 C 1.47026 * 125.64508 * 0.03376 * 8 6 5 10 10 C 1.54316 * 107.27118 * 181.02621 * 9 8 6 11 11 C 1.55161 * 102.94110 * 22.19563 * 10 9 8 12 12 H 1.09002 * 111.03323 * 82.58810 * 11 10 9 13 13 N 1.46502 * 111.00264 * 206.42255 * 11 10 9 14 14 C 1.46500 * 120.00032 * 52.19472 * 13 11 10 15 15 C 1.36937 * 119.99895 * 232.19470 * 13 11 10 16 16 H 1.07997 * 120.00237 * 339.56205 * 15 13 11 17 17 C 1.38815 * 119.99793 * 159.27919 * 15 13 11 18 18 N 1.31615 * 119.99985 * 345.41888 * 17 15 13 19 19 Si 1.86803 * 119.99768 * 165.41406 * 17 15 13 20 20 H 1.48498 * 109.47099 * 94.71272 * 19 17 15 21 21 H 1.48499 * 109.46954 * 214.71175 * 19 17 15 22 22 H 1.48503 * 109.46884 * 334.70972 * 19 17 15 23 23 C 1.47419 * 125.65315 * 179.97438 * 8 6 5 24 24 H 1.08002 * 119.99631 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00490 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99631 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46900 * 4.99927 * 3 2 1 28 28 H 1.08996 * 109.47519 * 245.00207 * 3 2 1 29 29 H 1.09004 * 109.46951 * 59.99897 * 4 3 2 30 30 H 1.09005 * 109.47173 * 300.00555 * 4 3 2 31 31 H 1.09004 * 109.47371 * 59.99952 * 5 4 3 32 32 H 1.09005 * 109.47298 * 300.00276 * 5 4 3 33 33 H 1.08998 * 109.88228 * 300.44608 * 9 8 6 34 34 H 1.09000 * 109.88239 * 61.45403 * 9 8 6 35 35 H 1.08997 * 110.72173 * 263.82976 * 10 9 8 36 36 H 1.09001 * 110.72132 * 140.55564 * 10 9 8 37 37 H 1.08995 * 109.47182 * 264.86625 * 14 13 11 38 38 H 1.08996 * 109.46834 * 24.87141 * 14 13 11 39 39 H 1.09000 * 109.47156 * 144.86844 * 14 13 11 40 40 H 0.97008 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.36399 * 37.06579 * 23 8 6 42 42 H 1.08997 * 110.46127 * 274.79378 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 6 4.7570 2.6855 2.3455 7 8 4.8211 1.7385 3.1005 8 7 5.5413 3.7628 2.5478 9 6 5.5644 4.9743 1.7152 10 6 6.6288 5.9195 2.3111 11 6 7.5435 4.9534 3.1095 12 1 8.2742 4.4769 2.4559 13 7 8.2070 5.6510 4.2138 14 6 7.4158 6.4337 5.1665 15 6 9.5667 5.5714 4.3554 16 1 10.1119 4.7642 3.8890 17 6 10.2450 6.5316 5.0936 18 7 9.6469 7.6595 5.4135 19 14 12.0065 6.2227 5.6331 20 1 12.9391 6.8243 4.6464 21 1 12.2312 6.8382 6.9657 22 1 12.2495 4.7600 5.7161 23 6 6.5172 3.9220 3.6413 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3587 2.1315 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 3.7400 0.5064 1.0921 30 1 2.4772 1.2355 2.1131 31 1 3.0945 3.4845 1.2717 32 1 4.3575 2.7561 0.2506 33 1 5.8309 4.7149 0.6906 34 1 4.5865 5.4552 1.7332 35 1 6.1672 6.6505 2.9749 36 1 7.1901 6.4161 1.5196 37 1 7.4064 7.4791 4.8585 38 1 6.3950 6.0526 5.1904 39 1 7.8576 6.3515 6.1596 40 1 10.1208 8.3303 5.9297 41 1 7.0086 2.9722 3.8524 42 1 6.0267 4.3019 4.5374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192059646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:21 Heat of formation + Delta-G solvation = -2.294234 kcal Electronic energy + Delta-G solvation = -20120.102863 eV Core-core repulsion = 17101.018360 eV Total energy + Delta-G solvation = -3019.084503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.81369 -37.59608 -36.07903 -34.80997 -32.57312 -31.56832 -29.77839 -28.40349 -26.89493 -26.05984 -23.71280 -22.34360 -21.76917 -20.10483 -19.32225 -18.79144 -17.07647 -16.85586 -16.20950 -15.62574 -15.34956 -14.78746 -14.28108 -14.00963 -13.68652 -13.39699 -13.28201 -12.86350 -12.55798 -12.44762 -12.28319 -11.97598 -11.80355 -11.64108 -11.34411 -11.10723 -10.96444 -10.85283 -10.77558 -10.50937 -10.50079 -10.26932 -9.89890 -9.87741 -9.64211 -9.51307 -8.60770 -8.32545 -6.84953 -5.78287 -3.23031 2.03769 2.84490 3.23876 3.35971 3.43363 3.46204 4.45332 4.53041 4.63507 4.78513 4.99974 5.02169 5.10898 5.21918 5.27812 5.34490 5.42358 5.47655 5.54450 5.58423 5.60889 5.69969 5.78841 5.90794 5.99268 6.01557 6.18848 6.30201 6.38010 6.38716 6.52877 6.54800 6.63709 6.75052 6.86170 7.33727 7.66494 7.76875 7.81917 8.31596 8.39982 9.16979 9.79857 10.27370 11.26659 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051272 B = 0.003174 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.979275 B = 8820.878458 C = 9020.829323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.135 4.135 6 C 0.522 3.478 7 O -0.549 6.549 8 N -0.615 5.615 9 C 0.103 3.897 10 C -0.151 4.151 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.586 5.586 14 C 0.160 3.840 15 C -0.259 4.259 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.906 3.094 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.084 3.916 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.001 0.999 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -7.566 -11.360 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.175 4.175 6 C 0.311 3.689 7 O -0.428 6.428 8 N -0.349 5.349 9 C -0.020 4.020 10 C -0.192 4.192 11 C 0.063 3.937 12 H 0.096 0.904 13 N -0.306 5.306 14 C 0.016 3.984 15 C -0.389 4.389 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.040 4.040 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.308 -7.960 -10.825 19.628 hybrid contribution 0.904 0.104 0.289 0.955 sum -13.404 -7.857 -10.537 18.773 Atomic orbital electron populations 1.23838 0.95987 1.01737 1.02134 1.22983 0.96022 0.98673 0.99009 1.20809 0.98225 0.95389 0.98888 1.21284 0.97643 0.96423 0.98401 1.21658 0.98105 1.00241 0.97543 1.20331 0.80840 0.81243 0.86510 1.90687 1.68742 1.35163 1.48181 1.48551 1.39706 1.16637 1.29991 1.22050 0.99829 0.85731 0.94431 1.23212 0.96807 0.98398 1.00743 1.21406 0.91913 0.90875 0.89548 0.90420 1.43844 1.03667 1.56755 1.26383 1.20810 0.89835 0.94450 0.93328 1.19236 0.82366 1.06595 1.30657 0.91160 1.24976 0.98049 0.94967 1.01553 1.70089 1.36825 1.06172 1.41931 0.86226 0.84461 0.77782 0.77986 1.21475 1.21546 1.20415 1.23008 0.90266 1.01148 0.89625 0.88661 0.88666 0.87376 0.91478 0.90895 0.91049 0.91124 0.89176 0.89088 0.91885 0.92107 0.90501 0.90489 0.94923 0.98062 0.93718 0.93686 0.91073 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.23 9.52 -36.03 -0.34 -1.57 16 3 C -0.10 -0.77 5.66 -27.88 -0.16 -0.93 16 4 C -0.10 -1.03 4.49 -26.74 -0.12 -1.15 16 5 C -0.14 -1.43 4.89 -27.89 -0.14 -1.57 16 6 C 0.52 8.12 7.85 -10.98 -0.09 8.04 16 7 O -0.55 -10.68 16.24 5.56 0.09 -10.59 16 8 N -0.61 -9.71 3.33 -170.52 -0.57 -10.27 16 9 C 0.10 1.34 6.49 -3.07 -0.02 1.32 16 10 C -0.15 -2.46 6.50 -24.90 -0.16 -2.62 16 11 C 0.17 3.42 3.54 -65.77 -0.23 3.19 16 12 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 13 N -0.59 -14.24 2.96 -171.02 -0.51 -14.74 16 14 C 0.16 3.83 7.56 59.85 0.45 4.28 16 15 C -0.26 -6.97 9.63 -15.06 -0.14 -7.12 16 16 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 17 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 18 N -0.91 -25.83 10.66 55.49 0.59 -25.23 16 19 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.08 1.57 6.47 -2.52 -0.02 1.55 16 24 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 25 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.33 6.99 -51.93 -0.36 0.97 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.83 7.39 -51.93 -0.38 0.45 16 38 H 0.00 0.02 6.38 -51.93 -0.33 -0.31 16 39 H 0.04 1.16 7.23 -51.93 -0.38 0.79 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 42 H 0.07 1.32 6.42 -51.93 -0.33 0.99 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -30.77 339.42 -8.15 -38.92 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.20 Total: -2.05 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.64 Total: 2.30 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.48 Total: -50.25 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.77 -8.15 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192059646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.621 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds