Wall clock time and date at job start Mon Mar 30 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00455 * 2 1 4 4 C 1.53000 * 109.47404 * 124.99683 * 3 2 1 5 5 C 1.52990 * 109.47293 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47401 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00110 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00563 * 180.02562 * 6 5 4 9 9 C 1.47026 * 125.64508 * 0.03376 * 8 6 5 10 10 C 1.54316 * 107.27118 * 181.02621 * 9 8 6 11 11 C 1.55161 * 102.94110 * 22.19563 * 10 9 8 12 12 H 1.09002 * 111.03323 * 82.58810 * 11 10 9 13 13 N 1.46502 * 111.00264 * 206.42255 * 11 10 9 14 14 C 1.46500 * 120.00032 * 52.19472 * 13 11 10 15 15 C 1.36937 * 119.99895 * 232.19470 * 13 11 10 16 16 H 1.07997 * 120.00237 * 339.56205 * 15 13 11 17 17 C 1.38815 * 119.99793 * 159.27919 * 15 13 11 18 18 N 1.31615 * 119.99985 * 345.41888 * 17 15 13 19 19 Si 1.86803 * 119.99768 * 165.41406 * 17 15 13 20 20 H 1.48498 * 109.47099 * 94.71272 * 19 17 15 21 21 H 1.48499 * 109.46954 * 214.71175 * 19 17 15 22 22 H 1.48503 * 109.46884 * 334.70972 * 19 17 15 23 23 C 1.47419 * 125.65315 * 179.97438 * 8 6 5 24 24 H 1.08002 * 119.99631 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00490 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99631 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46900 * 4.99927 * 3 2 1 28 28 H 1.08996 * 109.47519 * 245.00207 * 3 2 1 29 29 H 1.09004 * 109.46951 * 59.99897 * 4 3 2 30 30 H 1.09005 * 109.47173 * 300.00555 * 4 3 2 31 31 H 1.09004 * 109.47371 * 59.99952 * 5 4 3 32 32 H 1.09005 * 109.47298 * 300.00276 * 5 4 3 33 33 H 1.08998 * 109.88228 * 300.44608 * 9 8 6 34 34 H 1.09000 * 109.88239 * 61.45403 * 9 8 6 35 35 H 1.08997 * 110.72173 * 263.82976 * 10 9 8 36 36 H 1.09001 * 110.72132 * 140.55564 * 10 9 8 37 37 H 1.08995 * 109.47182 * 264.86625 * 14 13 11 38 38 H 1.08996 * 109.46834 * 24.87141 * 14 13 11 39 39 H 1.09000 * 109.47156 * 144.86844 * 14 13 11 40 40 H 0.97008 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.36399 * 37.06579 * 23 8 6 42 42 H 1.08997 * 110.46127 * 274.79378 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 6 4.7570 2.6855 2.3455 7 8 4.8211 1.7385 3.1005 8 7 5.5413 3.7628 2.5478 9 6 5.5644 4.9743 1.7152 10 6 6.6288 5.9195 2.3111 11 6 7.5435 4.9534 3.1095 12 1 8.2742 4.4769 2.4559 13 7 8.2070 5.6510 4.2138 14 6 7.4158 6.4337 5.1665 15 6 9.5667 5.5714 4.3554 16 1 10.1119 4.7642 3.8890 17 6 10.2450 6.5316 5.0936 18 7 9.6469 7.6595 5.4135 19 14 12.0065 6.2227 5.6331 20 1 12.9391 6.8243 4.6464 21 1 12.2312 6.8382 6.9657 22 1 12.2495 4.7600 5.7161 23 6 6.5172 3.9220 3.6413 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3587 2.1315 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 3.7400 0.5064 1.0921 30 1 2.4772 1.2355 2.1131 31 1 3.0945 3.4845 1.2717 32 1 4.3575 2.7561 0.2506 33 1 5.8309 4.7149 0.6906 34 1 4.5865 5.4552 1.7332 35 1 6.1672 6.6505 2.9749 36 1 7.1901 6.4161 1.5196 37 1 7.4064 7.4791 4.8585 38 1 6.3950 6.0526 5.1904 39 1 7.8576 6.3515 6.1596 40 1 10.1208 8.3303 5.9297 41 1 7.0086 2.9722 3.8524 42 1 6.0267 4.3019 4.5374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192059646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:21 Heat of formation + Delta-G solvation = -20.007129 kcal Electronic energy + Delta-G solvation = -20120.870952 eV Core-core repulsion = 17101.018360 eV Total energy + Delta-G solvation = -3019.852592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09265 -39.01129 -36.85311 -36.52656 -33.65598 -33.09847 -31.27510 -29.70077 -28.11565 -27.85631 -25.21570 -23.83992 -22.66735 -20.94990 -20.73224 -19.92931 -18.96646 -18.05103 -17.58902 -16.80366 -16.44189 -16.26571 -15.59907 -15.24822 -14.94303 -14.76104 -14.43119 -14.28690 -14.24945 -13.68550 -13.48484 -13.20483 -12.94320 -12.83805 -12.62071 -12.47460 -12.42564 -12.40163 -12.13983 -12.11968 -11.84393 -11.73384 -11.60427 -11.43181 -10.88115 -10.64921 -10.16151 -9.64341 -8.82624 -7.85552 -5.31868 1.44300 1.45762 1.48107 1.57352 1.65758 2.01979 2.50859 3.26513 3.53006 3.59368 3.88197 3.93618 4.04767 4.09364 4.21098 4.34196 4.36866 4.40600 4.45802 4.64098 4.68302 4.72811 4.75372 4.82230 4.90957 4.96481 5.01411 5.09741 5.22656 5.23363 5.26646 5.30405 5.42317 5.44645 5.61993 5.70043 5.81334 5.93872 6.29057 6.61248 7.11757 7.18246 7.82999 8.25968 9.17762 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051272 B = 0.003174 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.979275 B = 8820.878458 C = 9020.829323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.096 4.096 5 C -0.124 4.124 6 C 0.515 3.485 7 O -0.598 6.598 8 N -0.616 5.616 9 C 0.110 3.890 10 C -0.142 4.142 11 C 0.166 3.834 12 H 0.073 0.927 13 N -0.603 5.603 14 C 0.179 3.821 15 C -0.268 4.268 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.095 3.905 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.027 0.973 39 H 0.013 0.987 40 H 0.249 0.751 41 H 0.048 0.952 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 -7.568 -13.671 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.134 4.134 5 C -0.163 4.163 6 C 0.306 3.694 7 O -0.479 6.479 8 N -0.350 5.350 9 C -0.012 4.012 10 C -0.182 4.182 11 C 0.057 3.943 12 H 0.091 0.909 13 N -0.325 5.325 14 C 0.034 3.966 15 C -0.398 4.398 16 H 0.088 0.912 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.199 1.199 23 C -0.030 4.030 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.623 -7.971 -13.188 21.944 hybrid contribution 1.254 0.025 0.998 1.603 sum -14.369 -7.946 -12.190 20.450 Atomic orbital electron populations 1.24015 0.95914 1.02531 1.01079 1.23095 0.96447 0.98948 0.99986 1.20752 0.97899 0.95608 0.98208 1.21225 0.97588 0.95980 0.98634 1.21717 0.97453 1.01094 0.96014 1.21338 0.80772 0.80078 0.87179 1.90670 1.70142 1.36915 1.50198 1.48648 1.39017 1.17884 1.29425 1.22201 1.00291 0.83761 0.94987 1.23056 0.96901 0.97969 1.00270 1.21542 0.92402 0.91624 0.88779 0.90882 1.44005 1.03224 1.57161 1.28084 1.20495 0.90803 0.93579 0.91687 1.19534 0.83768 1.06259 1.30191 0.91182 1.25697 1.01693 0.94975 1.02141 1.70230 1.38112 1.06855 1.42828 0.85260 0.80329 0.77669 0.77181 1.20967 1.21971 1.19882 1.22596 0.90637 0.99445 0.90371 0.87829 0.88031 0.87665 0.90226 0.89452 0.92764 0.93187 0.86399 0.86186 0.88514 0.88885 0.91641 0.89620 0.96895 0.95467 0.96802 0.94164 0.93361 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.17 -2.46 9.52 25.65 0.24 -2.21 16 3 C -0.09 -1.15 5.66 29.85 0.17 -0.98 16 4 C -0.10 -1.81 4.49 30.59 0.14 -1.67 16 5 C -0.12 -2.15 4.89 29.84 0.15 -2.01 16 6 C 0.52 15.08 7.85 87.66 0.69 15.77 16 7 O -0.60 -23.30 16.24 -3.03 -0.05 -23.35 16 8 N -0.62 -18.14 3.33 -811.78 -2.70 -20.84 16 9 C 0.11 2.40 6.49 86.73 0.56 2.97 16 10 C -0.14 -4.30 6.50 31.78 0.21 -4.10 16 11 C 0.17 6.45 3.54 46.39 0.16 6.61 16 12 H 0.07 2.89 7.95 -2.39 -0.02 2.87 16 13 N -0.60 -29.66 2.96 -694.99 -2.06 -31.72 16 14 C 0.18 8.74 7.56 127.77 0.97 9.70 16 15 C -0.27 -14.57 9.63 84.03 0.81 -13.76 16 16 H 0.07 3.72 7.86 -2.91 -0.02 3.70 16 17 C -0.05 -2.76 5.07 84.86 0.43 -2.33 16 18 N -0.93 -54.37 10.66 21.65 0.23 -54.14 16 19 Si 0.97 44.92 29.58 68.60 2.03 46.95 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.10 3.55 6.47 86.86 0.56 4.11 16 24 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 25 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 26 H 0.11 1.56 8.06 -2.91 -0.02 1.53 16 27 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 30 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 31 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 2.15 6.99 -2.39 -0.02 2.13 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.01 0.67 7.39 -2.39 -0.02 0.65 16 38 H 0.03 1.15 6.38 -2.39 -0.02 1.14 16 39 H 0.01 0.72 7.23 -2.39 -0.02 0.70 16 40 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 41 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 42 H 0.05 2.08 6.42 -2.39 -0.02 2.06 16 Total: -1.00 -68.98 339.42 4.47 -64.51 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.96 Total: 8.13 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.05 Total: 10.45 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.53 Total: -106.69 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.98 4.47 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192059646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.502 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds