Wall clock time and date at job start Mon Mar 30 2020 00:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99639 * 2 1 4 4 C 1.53000 * 109.47016 * 125.00278 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47280 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64729 * 0.02662 * 8 6 5 10 10 C 1.54319 * 107.27301 * 178.89172 * 9 8 6 11 11 C 1.55160 * 102.94336 * 337.80918 * 10 9 8 12 12 H 1.09004 * 110.99880 * 277.42893 * 11 10 9 13 13 N 1.46498 * 111.00492 * 153.57348 * 11 10 9 14 14 C 1.46492 * 120.00089 * 301.44948 * 13 11 10 15 15 C 1.36939 * 119.99816 * 121.45216 * 13 11 10 16 16 H 1.08004 * 119.99957 * 21.72362 * 15 13 11 17 17 C 1.38803 * 120.00077 * 201.72575 * 15 13 11 18 18 N 1.31623 * 120.00066 * 13.62625 * 17 15 13 19 19 Si 1.86806 * 119.99993 * 193.63032 * 17 15 13 20 20 H 1.48494 * 109.47152 * 59.99755 * 19 17 15 21 21 H 1.48504 * 109.46793 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46953 * 299.99655 * 19 17 15 23 23 C 1.47417 * 125.65034 * 179.97438 * 8 6 5 24 24 H 1.08001 * 120.00143 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00308 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99969 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47393 * 4.99707 * 3 2 1 28 28 H 1.09005 * 109.46848 * 244.99966 * 3 2 1 29 29 H 1.08996 * 109.47257 * 59.99974 * 4 3 2 30 30 H 1.08997 * 109.46925 * 299.99301 * 4 3 2 31 31 H 1.08998 * 109.47136 * 59.99586 * 5 4 3 32 32 H 1.09005 * 109.47106 * 299.99844 * 5 4 3 33 33 H 1.09002 * 109.88165 * 59.47048 * 9 8 6 34 34 H 1.08999 * 110.00704 * 298.38316 * 9 8 6 35 35 H 1.08992 * 110.72449 * 219.44380 * 10 9 8 36 36 H 1.08999 * 110.71644 * 96.16506 * 10 9 8 37 37 H 1.09007 * 109.46957 * 94.44873 * 14 13 11 38 38 H 1.09003 * 109.47461 * 214.44531 * 14 13 11 39 39 H 1.09002 * 109.47505 * 334.45417 * 14 13 11 40 40 H 0.96998 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36830 * 85.33819 * 23 8 6 42 42 H 1.09000 * 110.36746 * 323.01395 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 6 4.7569 2.6859 2.3454 7 8 4.8206 1.7391 3.1007 8 7 5.5424 3.7624 2.5466 9 6 5.5678 4.9726 1.7121 10 6 6.5939 5.9399 2.3388 11 6 6.6764 5.4537 3.8100 12 1 5.8619 5.8676 4.4044 13 7 7.9757 5.7848 4.4004 14 6 9.2078 5.2800 3.7896 15 6 8.0383 6.5661 5.5232 16 1 7.1783 6.6503 6.1712 17 6 9.2070 7.2499 5.8287 18 7 10.1548 7.3702 4.9234 19 14 9.4347 7.9991 7.5247 20 1 9.3662 6.9290 8.5519 21 1 10.7574 8.6704 7.5957 22 1 8.3611 8.9943 7.7743 23 6 6.5176 3.9220 3.6405 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5067 1.0920 30 1 2.4772 1.2358 2.1129 31 1 3.0957 3.4847 1.2705 32 1 4.3582 2.7551 0.2498 33 1 4.5810 5.4355 1.7003 34 1 5.8701 4.7187 0.6961 35 1 6.2338 6.9676 2.2920 36 1 7.5622 5.8466 1.8470 37 1 9.6091 6.0300 3.1079 38 1 9.9398 5.0689 4.5692 39 1 8.9914 4.3657 3.2370 40 1 10.9716 7.8477 5.1370 41 1 7.4711 3.4697 3.3678 42 1 6.1343 3.4766 4.5585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192059649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:24 Heat of formation + Delta-G solvation = -1.726099 kcal Electronic energy + Delta-G solvation = -20122.476623 eV Core-core repulsion = 17103.416756 eV Total energy + Delta-G solvation = -3019.059867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81615 -37.59367 -36.07730 -34.80521 -32.57273 -31.56036 -29.79663 -28.38961 -26.88328 -26.07278 -23.72224 -22.31940 -21.77171 -20.10432 -19.31084 -18.80632 -17.07565 -16.85094 -16.21023 -15.75418 -15.03952 -14.92719 -14.46685 -13.80748 -13.66844 -13.43138 -13.35242 -12.69603 -12.68166 -12.51857 -12.26741 -11.92282 -11.79885 -11.64782 -11.33867 -11.10542 -10.96907 -10.85098 -10.78401 -10.51927 -10.44796 -10.26965 -9.90217 -9.88746 -9.64327 -9.51335 -8.59674 -8.32251 -6.83638 -5.77861 -3.23883 2.03860 2.84226 3.23550 3.37139 3.42728 3.44492 4.45349 4.52997 4.63530 4.78629 5.00125 5.03461 5.10969 5.22823 5.26848 5.38658 5.40074 5.48679 5.54438 5.58550 5.60668 5.69905 5.78412 5.90930 5.99426 6.02167 6.18853 6.28982 6.38440 6.38951 6.52957 6.55471 6.64139 6.78114 6.87127 7.33643 7.67026 7.76518 7.81626 8.32531 8.39751 9.17334 9.79834 10.27870 11.27034 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050038 B = 0.003165 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.436537 B = 8844.110512 C = 8982.944031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.099 4.099 5 C -0.135 4.135 6 C 0.522 3.478 7 O -0.550 6.550 8 N -0.615 5.615 9 C 0.103 3.897 10 C -0.152 4.152 11 C 0.173 3.827 12 H 0.077 0.923 13 N -0.586 5.586 14 C 0.159 3.841 15 C -0.260 4.260 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.084 3.916 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.002 0.998 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -8.058 -11.567 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.175 4.175 6 C 0.311 3.689 7 O -0.428 6.428 8 N -0.349 5.349 9 C -0.021 4.021 10 C -0.193 4.193 11 C 0.063 3.937 12 H 0.095 0.905 13 N -0.306 5.306 14 C 0.015 3.985 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.040 4.040 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.570 -8.517 -11.138 19.513 hybrid contribution 0.271 0.556 0.746 0.969 sum -13.299 -7.961 -10.392 18.661 Atomic orbital electron populations 1.23840 0.95986 1.01740 1.02111 1.22983 0.96022 0.98664 0.99030 1.20813 0.98229 0.95398 0.98873 1.21283 0.97631 0.96405 0.98424 1.21658 0.98130 1.00276 0.97480 1.20328 0.80744 0.81279 0.86554 1.90688 1.68985 1.35070 1.48053 1.48542 1.39613 1.16781 1.29918 1.22056 1.00078 0.85711 0.94247 1.23243 0.98371 0.98191 0.99472 1.21406 0.90312 0.90344 0.91675 0.90459 1.43816 0.99324 1.57371 1.30120 1.20832 0.87551 0.93357 0.96795 1.19187 0.99489 1.21627 0.98641 0.91250 1.24998 0.97959 0.98406 0.98105 1.70068 1.08223 1.44705 1.32052 0.86298 0.77026 0.78920 0.84066 1.20996 1.21613 1.20894 1.22955 0.91466 1.00287 0.89312 0.88671 0.88653 0.87384 0.91455 0.90917 0.91086 0.91086 0.89121 0.89128 0.91913 0.92104 0.90541 0.90574 0.95026 0.93635 0.97965 0.93610 0.91287 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.23 9.52 -36.02 -0.34 -1.57 16 3 C -0.10 -0.77 5.66 -27.88 -0.16 -0.93 16 4 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 5 C -0.14 -1.43 4.89 -27.89 -0.14 -1.57 16 6 C 0.52 8.12 7.85 -10.99 -0.09 8.03 16 7 O -0.55 -10.65 16.24 5.55 0.09 -10.56 16 8 N -0.61 -9.71 3.33 -170.52 -0.57 -10.27 16 9 C 0.10 1.35 6.49 -3.06 -0.02 1.33 16 10 C -0.15 -2.51 6.54 -24.90 -0.16 -2.67 16 11 C 0.17 3.43 3.54 -65.78 -0.23 3.19 16 12 H 0.08 1.54 7.94 -51.93 -0.41 1.13 16 13 N -0.59 -14.24 2.96 -171.03 -0.51 -14.75 16 14 C 0.16 3.81 7.82 59.84 0.47 4.27 16 15 C -0.26 -6.99 9.63 -15.06 -0.15 -7.13 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 18 N -0.91 -25.83 10.67 55.49 0.59 -25.24 16 19 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.08 1.56 6.45 -2.53 -0.02 1.55 16 24 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 25 H 0.10 0.67 7.84 -52.48 -0.41 0.26 16 26 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 27 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.34 7.28 -51.93 -0.38 0.97 16 37 H 0.03 0.81 7.41 -51.92 -0.38 0.42 16 38 H 0.04 1.19 7.22 -51.93 -0.38 0.81 16 39 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.07 1.36 6.03 -51.93 -0.31 1.04 16 42 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -30.68 339.26 -8.11 -38.79 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.18 Total: -1.88 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.63 Total: 2.25 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.48 Total: -50.26 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.68 -8.11 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192059649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.061 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds