Wall clock time and date at job start Mon Mar 30 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99639 * 2 1 4 4 C 1.53000 * 109.47016 * 125.00278 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47280 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64729 * 0.02662 * 8 6 5 10 10 C 1.54319 * 107.27301 * 178.89172 * 9 8 6 11 11 C 1.55160 * 102.94336 * 337.80918 * 10 9 8 12 12 H 1.09004 * 110.99880 * 277.42893 * 11 10 9 13 13 N 1.46498 * 111.00492 * 153.57348 * 11 10 9 14 14 C 1.46492 * 120.00089 * 301.44948 * 13 11 10 15 15 C 1.36939 * 119.99816 * 121.45216 * 13 11 10 16 16 H 1.08004 * 119.99957 * 21.72362 * 15 13 11 17 17 C 1.38803 * 120.00077 * 201.72575 * 15 13 11 18 18 N 1.31623 * 120.00066 * 13.62625 * 17 15 13 19 19 Si 1.86806 * 119.99993 * 193.63032 * 17 15 13 20 20 H 1.48494 * 109.47152 * 59.99755 * 19 17 15 21 21 H 1.48504 * 109.46793 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46953 * 299.99655 * 19 17 15 23 23 C 1.47417 * 125.65034 * 179.97438 * 8 6 5 24 24 H 1.08001 * 120.00143 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00308 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99969 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47393 * 4.99707 * 3 2 1 28 28 H 1.09005 * 109.46848 * 244.99966 * 3 2 1 29 29 H 1.08996 * 109.47257 * 59.99974 * 4 3 2 30 30 H 1.08997 * 109.46925 * 299.99301 * 4 3 2 31 31 H 1.08998 * 109.47136 * 59.99586 * 5 4 3 32 32 H 1.09005 * 109.47106 * 299.99844 * 5 4 3 33 33 H 1.09002 * 109.88165 * 59.47048 * 9 8 6 34 34 H 1.08999 * 110.00704 * 298.38316 * 9 8 6 35 35 H 1.08992 * 110.72449 * 219.44380 * 10 9 8 36 36 H 1.08999 * 110.71644 * 96.16506 * 10 9 8 37 37 H 1.09007 * 109.46957 * 94.44873 * 14 13 11 38 38 H 1.09003 * 109.47461 * 214.44531 * 14 13 11 39 39 H 1.09002 * 109.47505 * 334.45417 * 14 13 11 40 40 H 0.96998 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36830 * 85.33819 * 23 8 6 42 42 H 1.09000 * 110.36746 * 323.01395 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 6 4.7569 2.6859 2.3454 7 8 4.8206 1.7391 3.1007 8 7 5.5424 3.7624 2.5466 9 6 5.5678 4.9726 1.7121 10 6 6.5939 5.9399 2.3388 11 6 6.6764 5.4537 3.8100 12 1 5.8619 5.8676 4.4044 13 7 7.9757 5.7848 4.4004 14 6 9.2078 5.2800 3.7896 15 6 8.0383 6.5661 5.5232 16 1 7.1783 6.6503 6.1712 17 6 9.2070 7.2499 5.8287 18 7 10.1548 7.3702 4.9234 19 14 9.4347 7.9991 7.5247 20 1 9.3662 6.9290 8.5519 21 1 10.7574 8.6704 7.5957 22 1 8.3611 8.9943 7.7743 23 6 6.5176 3.9220 3.6405 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5067 1.0920 30 1 2.4772 1.2358 2.1129 31 1 3.0957 3.4847 1.2705 32 1 4.3582 2.7551 0.2498 33 1 4.5810 5.4355 1.7003 34 1 5.8701 4.7187 0.6961 35 1 6.2338 6.9676 2.2920 36 1 7.5622 5.8466 1.8470 37 1 9.6091 6.0300 3.1079 38 1 9.9398 5.0689 4.5692 39 1 8.9914 4.3657 3.2370 40 1 10.9716 7.8477 5.1370 41 1 7.4711 3.4697 3.3678 42 1 6.1343 3.4766 4.5585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192059649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:23 Heat of formation + Delta-G solvation = -19.327945 kcal Electronic energy + Delta-G solvation = -20123.239896 eV Core-core repulsion = 17103.416756 eV Total energy + Delta-G solvation = -3019.823140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09606 -39.01039 -36.85081 -36.52287 -33.65305 -33.09418 -31.29503 -29.68687 -28.11387 -27.86219 -25.23522 -23.81211 -22.67385 -20.94418 -20.73133 -19.94437 -18.96570 -18.05386 -17.57469 -16.87025 -16.48967 -15.97229 -15.84907 -15.12273 -15.06938 -14.66970 -14.43820 -14.36252 -14.16874 -13.76852 -13.42883 -13.19884 -12.95909 -12.82576 -12.61087 -12.48323 -12.44348 -12.38243 -12.13208 -12.10174 -11.84892 -11.72822 -11.61272 -11.43676 -10.87957 -10.63912 -10.16084 -9.64038 -8.81243 -7.84861 -5.32574 1.44381 1.46794 1.49647 1.55736 1.65582 2.01623 2.51152 3.27290 3.52977 3.59584 3.88350 3.93384 4.03547 4.10913 4.20010 4.33092 4.36734 4.40487 4.46011 4.63758 4.68505 4.71821 4.75419 4.82229 4.91815 4.96546 5.02163 5.09984 5.21848 5.24662 5.26163 5.32085 5.41611 5.44243 5.62274 5.69978 5.81396 5.93949 6.29893 6.60898 7.12042 7.18019 7.83009 8.26598 9.18248 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050038 B = 0.003165 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.436537 B = 8844.110512 C = 8982.944031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.096 4.096 5 C -0.124 4.124 6 C 0.515 3.485 7 O -0.597 6.597 8 N -0.616 5.616 9 C 0.110 3.890 10 C -0.143 4.143 11 C 0.166 3.834 12 H 0.073 0.927 13 N -0.603 5.603 14 C 0.178 3.822 15 C -0.269 4.269 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.095 3.905 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.011 0.989 38 H 0.014 0.986 39 H 0.027 0.973 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -7.607 -13.246 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.134 4.134 5 C -0.163 4.163 6 C 0.307 3.693 7 O -0.479 6.479 8 N -0.349 5.349 9 C -0.012 4.012 10 C -0.183 4.183 11 C 0.057 3.943 12 H 0.091 0.909 13 N -0.325 5.325 14 C 0.033 3.967 15 C -0.399 4.399 16 H 0.088 0.912 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.199 1.199 23 C -0.030 4.030 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.659 -8.063 -12.852 21.803 hybrid contribution 0.840 0.342 1.275 1.565 sum -14.819 -7.722 -11.577 20.328 Atomic orbital electron populations 1.24017 0.95918 1.02531 1.01074 1.23095 0.96444 0.98941 0.99991 1.20756 0.97905 0.95616 0.98202 1.21223 0.97577 0.95962 0.98652 1.21717 0.97486 1.01137 0.95957 1.21327 0.80664 0.80127 0.87207 1.90671 1.70354 1.36802 1.50048 1.48638 1.38989 1.17996 1.29325 1.22194 1.00722 0.83697 0.94632 1.23074 0.99097 0.99597 0.96551 1.21540 0.88026 0.91073 0.93697 0.90861 1.43975 1.00881 1.57340 1.30266 1.20519 0.87069 0.93710 0.95413 1.19501 0.99524 1.21184 0.99653 0.91158 1.25725 0.97928 0.99487 1.01305 1.70217 1.08465 1.45814 1.33563 0.85325 0.76781 0.78137 0.80084 1.20905 1.21965 1.19888 1.22557 0.91710 0.98962 0.89816 0.88030 0.87834 0.87653 0.90222 0.89479 0.92766 0.93143 0.86363 0.86261 0.88570 0.88909 0.89770 0.91899 0.97028 0.96690 0.95428 0.94159 0.92660 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.17 -2.45 9.52 25.65 0.24 -2.21 16 3 C -0.09 -1.15 5.66 29.85 0.17 -0.98 16 4 C -0.10 -1.80 4.49 30.59 0.14 -1.67 16 5 C -0.12 -2.16 4.89 29.85 0.15 -2.01 16 6 C 0.52 15.06 7.85 87.66 0.69 15.75 16 7 O -0.60 -23.17 16.24 -3.05 -0.05 -23.22 16 8 N -0.62 -18.13 3.33 -811.80 -2.70 -20.83 16 9 C 0.11 2.43 6.49 86.73 0.56 3.00 16 10 C -0.14 -4.41 6.54 31.78 0.21 -4.20 16 11 C 0.17 6.46 3.54 46.39 0.16 6.63 16 12 H 0.07 2.90 7.94 -2.39 -0.02 2.88 16 13 N -0.60 -29.68 2.96 -695.01 -2.06 -31.74 16 14 C 0.18 8.70 7.82 127.77 1.00 9.70 16 15 C -0.27 -14.60 9.63 84.03 0.81 -13.79 16 16 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 17 C -0.05 -2.72 5.08 84.86 0.43 -2.28 16 18 N -0.93 -54.41 10.67 21.65 0.23 -54.18 16 19 Si 0.97 44.80 29.58 68.60 2.03 46.82 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.09 3.52 6.45 86.86 0.56 4.08 16 24 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 25 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 26 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 27 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 28 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 29 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.12 7.28 -2.39 -0.02 2.10 16 37 H 0.01 0.60 7.41 -2.38 -0.02 0.59 16 38 H 0.01 0.78 7.22 -2.39 -0.02 0.77 16 39 H 0.03 1.18 6.03 -2.39 -0.01 1.16 16 40 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.06 2.19 6.03 -2.39 -0.01 2.17 16 42 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -68.67 339.26 4.51 -64.16 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.96 Total: 8.64 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.09 Total: 10.35 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.53 Total: -106.75 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.67 4.51 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192059649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.831 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds