Wall clock time and date at job start Mon Mar 30 2020 00:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47183 * 270.00472 * 3 2 1 5 5 H 1.48505 * 109.46641 * 29.99976 * 3 2 1 6 6 H 1.48496 * 109.47057 * 149.99494 * 3 2 1 7 7 C 1.37875 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00255 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99811 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46828 * 329.99421 * 11 10 9 13 13 C 1.52996 * 109.47234 * 89.99585 * 11 10 9 14 14 C 1.53003 * 109.46768 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47272 * 299.99770 * 14 13 11 16 16 C 1.53006 * 109.46815 * 60.00067 * 15 14 13 17 17 C 1.52992 * 109.47290 * 300.00363 * 16 15 14 18 18 H 1.09011 * 109.46961 * 299.99816 * 17 16 15 19 19 C 1.52996 * 109.47284 * 179.97438 * 17 16 15 20 20 C 1.53008 * 109.47219 * 65.48294 * 19 17 16 21 21 C 1.52997 * 109.47086 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47457 * 59.99624 * 21 20 19 23 23 C 1.52997 * 109.47232 * 299.99930 * 22 21 20 24 24 C 1.52996 * 109.46975 * 60.00237 * 23 22 21 25 25 H 0.96998 * 119.99615 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47239 * 60.00053 * 9 7 2 27 27 H 1.09000 * 109.47016 * 300.00025 * 9 7 2 28 28 H 1.09003 * 109.47411 * 299.99838 * 13 11 10 29 29 H 1.08999 * 109.47347 * 60.00154 * 13 11 10 30 30 H 1.08999 * 109.46980 * 60.00029 * 14 13 11 31 31 H 1.09002 * 109.46858 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47190 * 300.00818 * 15 14 13 33 33 H 1.08994 * 109.46945 * 179.97438 * 15 14 13 34 34 H 1.08992 * 109.46837 * 179.97438 * 16 15 14 35 35 H 1.09008 * 109.46471 * 60.00181 * 16 15 14 36 36 H 1.09001 * 109.47367 * 185.47901 * 19 17 16 37 37 H 1.09001 * 109.46630 * 300.00058 * 20 19 17 38 38 H 1.09000 * 109.47188 * 60.00209 * 20 19 17 39 39 H 1.09001 * 109.46989 * 299.99295 * 21 20 19 40 40 H 1.09000 * 109.47058 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46832 * 60.00130 * 22 21 20 43 43 H 1.09001 * 109.46922 * 300.00149 * 23 22 21 44 44 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47261 * 180.02562 * 24 23 22 46 46 H 1.08992 * 109.47554 * 59.99633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 1 0.6053 -4.8208 0.5125 13 6 1.3462 -5.3354 -1.4438 14 6 0.6888 -6.7170 -1.4443 15 6 1.5976 -7.7146 -0.7233 16 6 1.8166 -7.2545 0.7194 17 6 2.4739 -5.8729 0.7200 18 1 3.4338 -5.9271 0.2062 19 6 2.6923 -5.4126 2.1626 20 6 3.7077 -6.3327 2.8434 21 6 3.9256 -5.8727 4.2862 22 6 2.5983 -5.9279 5.0451 23 6 1.5830 -5.0078 4.3644 24 6 1.3650 -5.4678 2.9216 25 1 -0.4849 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 0.6991 -4.6245 -1.9576 29 1 2.3061 -5.3900 -1.9574 30 1 -0.2710 -6.6628 -0.9305 31 1 0.5332 -7.0449 -2.4721 32 1 2.5575 -7.7686 -1.2370 33 1 1.1290 -8.6986 -0.7233 34 1 2.4636 -7.9653 1.2332 35 1 0.8567 -7.2004 1.2331 36 1 3.0701 -4.3902 2.1645 37 1 3.3299 -7.3551 2.8415 38 1 4.6533 -6.2936 2.3025 39 1 4.3033 -4.8502 4.2885 40 1 4.6493 -6.5279 4.7711 41 1 2.7537 -5.6006 6.0732 42 1 2.2207 -6.9504 5.0429 43 1 1.9606 -3.9853 4.3667 44 1 0.6372 -5.0474 4.9048 45 1 0.6420 -4.8121 2.4365 46 1 0.9874 -6.4903 2.9194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:33 Heat of formation + Delta-G solvation = -104.570790 kcal Electronic energy + Delta-G solvation = -21839.688809 eV Core-core repulsion = 18919.709605 eV Total energy + Delta-G solvation = -2919.979204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.74833 -37.30743 -35.54677 -32.67999 -32.32681 -30.54555 -29.55783 -28.00241 -26.70205 -23.34953 -22.71539 -22.46859 -21.51837 -20.56032 -19.75080 -18.51678 -16.42365 -15.72156 -15.38331 -14.73276 -14.43803 -14.25830 -14.11097 -14.04476 -13.81967 -13.49835 -12.94937 -12.79648 -12.56612 -12.09668 -11.90069 -11.88146 -11.56786 -11.41486 -11.18976 -10.97647 -10.85723 -10.77745 -10.70909 -10.56470 -10.41582 -10.28087 -10.17205 -10.00194 -9.74836 -9.62138 -9.32591 -9.02624 -8.71535 -8.05235 -6.08497 -4.09691 3.31146 3.36237 3.41478 4.36156 4.73116 4.83979 4.91360 4.98268 5.07056 5.13855 5.27277 5.27936 5.40833 5.49163 5.59512 5.62548 5.71744 5.72405 5.74257 5.79829 5.82952 5.84942 5.89098 5.94299 5.97499 6.10650 6.21242 6.25832 6.27262 6.33360 6.34911 6.39935 6.42611 6.49335 6.55679 6.57693 6.69584 6.73623 6.83435 6.94293 7.19661 7.49303 7.82978 8.20521 8.66194 9.05180 9.55261 11.02965 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.006244 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.325512 B = 4483.119524 C = 5744.020493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.387 6.387 11 C 0.096 3.904 12 H 0.050 0.950 13 C -0.141 4.141 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.075 4.075 18 H 0.071 0.929 19 C -0.080 4.080 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -15.663 4.904 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.306 6.306 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.179 4.179 14 C -0.154 4.154 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.093 4.093 18 H 0.089 0.911 19 C -0.098 4.098 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.110 -15.503 4.910 16.557 hybrid contribution -0.024 0.966 -0.112 0.973 sum 3.086 -14.537 4.798 15.616 Atomic orbital electron populations 1.69964 1.06070 1.27036 1.50736 1.24931 0.94934 0.99331 0.95249 0.86387 0.79718 0.82485 0.78218 1.20502 1.21109 1.19651 1.21068 0.93998 0.89472 1.50527 0.91669 1.20168 0.88726 0.83672 0.95069 1.87871 1.35356 1.12752 1.94648 1.21851 0.95446 0.85498 0.93502 0.93176 1.22049 1.01092 0.95988 0.98792 1.21495 0.98748 0.95248 0.99869 1.21556 0.99819 0.98021 0.96265 1.21674 1.00928 0.96313 0.96278 1.21183 0.99164 0.93420 0.95542 0.91081 1.21105 0.95006 1.00612 0.93086 1.21613 0.99024 0.99102 0.95234 1.21528 0.96881 1.01462 0.95830 1.21508 0.95752 0.99627 0.98452 1.21532 0.98461 0.99759 0.96049 1.21659 0.97779 1.00815 0.94979 0.92736 0.98003 0.97913 0.91810 0.91771 0.92259 0.92421 0.92177 0.92559 0.91896 0.91719 0.89653 0.92350 0.92385 0.91916 0.92727 0.92672 0.92526 0.91691 0.92577 0.91723 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.11 9.43 -34.44 -0.32 -15.44 16 8 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.20 5.42 5.50 36.00 0.20 5.61 16 10 O -0.39 -9.21 9.20 -35.23 -0.32 -9.54 16 11 C 0.10 1.78 1.81 -26.73 -0.05 1.74 16 12 H 0.05 0.97 6.22 -51.93 -0.32 0.64 16 13 C -0.14 -2.38 5.54 -26.73 -0.15 -2.53 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 16 C -0.11 -1.42 4.46 -26.73 -0.12 -1.54 16 17 C -0.07 -1.14 1.70 -90.63 -0.15 -1.29 16 18 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 19 C -0.08 -1.21 1.89 -90.61 -0.17 -1.38 16 20 C -0.11 -1.40 4.97 -26.73 -0.13 -1.54 16 21 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 23 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 24 C -0.12 -1.67 4.46 -26.73 -0.12 -1.79 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.00 0.06 7.87 -51.93 -0.41 -0.35 16 27 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 28 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.70 6.58 -51.93 -0.34 0.36 16 35 H 0.06 0.80 6.34 -51.92 -0.33 0.47 16 36 H 0.09 1.59 7.52 -51.93 -0.39 1.20 16 37 H 0.06 0.67 6.58 -51.93 -0.34 0.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.08 6.58 -51.93 -0.34 0.74 16 46 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -29.87 340.14 -10.07 -39.94 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.68 Total: -1.51 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -1.91 Total: -24.71 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.32 Total: -9.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.87 -10.07 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.634 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds