Wall clock time and date at job start Mon Mar 30 2020 00:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47183 * 270.00472 * 3 2 1 5 5 H 1.48505 * 109.46641 * 29.99976 * 3 2 1 6 6 H 1.48496 * 109.47057 * 149.99494 * 3 2 1 7 7 C 1.37875 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00255 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99811 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46828 * 329.99421 * 11 10 9 13 13 C 1.52996 * 109.47234 * 89.99585 * 11 10 9 14 14 C 1.53003 * 109.46768 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47272 * 299.99770 * 14 13 11 16 16 C 1.53006 * 109.46815 * 60.00067 * 15 14 13 17 17 C 1.52992 * 109.47290 * 300.00363 * 16 15 14 18 18 H 1.09011 * 109.46961 * 299.99816 * 17 16 15 19 19 C 1.52996 * 109.47284 * 179.97438 * 17 16 15 20 20 C 1.53008 * 109.47219 * 65.48294 * 19 17 16 21 21 C 1.52997 * 109.47086 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47457 * 59.99624 * 21 20 19 23 23 C 1.52997 * 109.47232 * 299.99930 * 22 21 20 24 24 C 1.52996 * 109.46975 * 60.00237 * 23 22 21 25 25 H 0.96998 * 119.99615 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47239 * 60.00053 * 9 7 2 27 27 H 1.09000 * 109.47016 * 300.00025 * 9 7 2 28 28 H 1.09003 * 109.47411 * 299.99838 * 13 11 10 29 29 H 1.08999 * 109.47347 * 60.00154 * 13 11 10 30 30 H 1.08999 * 109.46980 * 60.00029 * 14 13 11 31 31 H 1.09002 * 109.46858 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47190 * 300.00818 * 15 14 13 33 33 H 1.08994 * 109.46945 * 179.97438 * 15 14 13 34 34 H 1.08992 * 109.46837 * 179.97438 * 16 15 14 35 35 H 1.09008 * 109.46471 * 60.00181 * 16 15 14 36 36 H 1.09001 * 109.47367 * 185.47901 * 19 17 16 37 37 H 1.09001 * 109.46630 * 300.00058 * 20 19 17 38 38 H 1.09000 * 109.47188 * 60.00209 * 20 19 17 39 39 H 1.09001 * 109.46989 * 299.99295 * 21 20 19 40 40 H 1.09000 * 109.47058 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47153 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46832 * 60.00130 * 22 21 20 43 43 H 1.09001 * 109.46922 * 300.00149 * 23 22 21 44 44 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47261 * 180.02562 * 24 23 22 46 46 H 1.08992 * 109.47554 * 59.99633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 1 0.6053 -4.8208 0.5125 13 6 1.3462 -5.3354 -1.4438 14 6 0.6888 -6.7170 -1.4443 15 6 1.5976 -7.7146 -0.7233 16 6 1.8166 -7.2545 0.7194 17 6 2.4739 -5.8729 0.7200 18 1 3.4338 -5.9271 0.2062 19 6 2.6923 -5.4126 2.1626 20 6 3.7077 -6.3327 2.8434 21 6 3.9256 -5.8727 4.2862 22 6 2.5983 -5.9279 5.0451 23 6 1.5830 -5.0078 4.3644 24 6 1.3650 -5.4678 2.9216 25 1 -0.4849 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 0.6991 -4.6245 -1.9576 29 1 2.3061 -5.3900 -1.9574 30 1 -0.2710 -6.6628 -0.9305 31 1 0.5332 -7.0449 -2.4721 32 1 2.5575 -7.7686 -1.2370 33 1 1.1290 -8.6986 -0.7233 34 1 2.4636 -7.9653 1.2332 35 1 0.8567 -7.2004 1.2331 36 1 3.0701 -4.3902 2.1645 37 1 3.3299 -7.3551 2.8415 38 1 4.6533 -6.2936 2.3025 39 1 4.3033 -4.8502 4.2885 40 1 4.6493 -6.5279 4.7711 41 1 2.7537 -5.6006 6.0732 42 1 2.2207 -6.9504 5.0429 43 1 1.9606 -3.9853 4.3667 44 1 0.6372 -5.0474 4.9048 45 1 0.6420 -4.8121 2.4365 46 1 0.9874 -6.4903 2.9194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:32 Heat of formation + Delta-G solvation = -119.719928 kcal Electronic energy + Delta-G solvation = -21840.345725 eV Core-core repulsion = 18919.709605 eV Total energy + Delta-G solvation = -2920.636120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03286 -38.64284 -37.14603 -34.88300 -33.48981 -31.62624 -30.96190 -29.52563 -28.50208 -24.78297 -24.38565 -23.74515 -22.89663 -21.67521 -20.96142 -19.73047 -18.62257 -17.47287 -16.77726 -16.40008 -15.92944 -15.78526 -15.32699 -15.16979 -15.01055 -14.74046 -14.45883 -14.32740 -13.98530 -13.58454 -13.21913 -13.09844 -12.94543 -12.85979 -12.82519 -12.62957 -12.34460 -12.21140 -12.00657 -11.85436 -11.76069 -11.61552 -11.49514 -11.29763 -11.19376 -10.92817 -10.85935 -10.73224 -10.58482 -10.00530 -8.34850 -6.47434 1.35652 1.38871 1.50805 2.31540 2.98440 3.16092 3.66549 3.78395 3.84514 3.98895 4.07801 4.10162 4.26727 4.32070 4.35641 4.46578 4.49905 4.58989 4.60596 4.64255 4.69692 4.74185 4.77360 4.80452 4.86564 4.90831 5.01218 5.11649 5.13650 5.17116 5.17729 5.24528 5.27680 5.29198 5.31172 5.36199 5.40882 5.45780 5.50711 5.50981 5.55419 5.64480 5.72880 5.95664 6.55080 6.85017 7.25243 8.77552 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.006244 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.325512 B = 4483.119524 C = 5744.020493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.220 3.780 10 O -0.401 6.401 11 C 0.085 3.915 12 H 0.036 0.964 13 C -0.140 4.140 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.068 4.068 18 H 0.066 0.934 19 C -0.078 4.078 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.111 4.111 25 H 0.271 0.729 26 H -0.022 1.022 27 H -0.022 1.022 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.027 0.973 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -17.796 5.585 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.145 3.855 10 O -0.321 6.321 11 C 0.027 3.973 12 H 0.055 0.945 13 C -0.178 4.178 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.087 4.087 18 H 0.084 0.916 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.079 0.921 26 H -0.004 1.004 27 H -0.005 1.005 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.044 -17.660 5.589 18.960 hybrid contribution -0.364 1.624 -0.344 1.699 sum 3.679 -16.037 5.244 17.269 Atomic orbital electron populations 1.70077 1.07771 1.28600 1.50519 1.25958 0.95948 1.03350 0.93883 0.85220 0.78399 0.77105 0.78941 1.19138 1.19720 1.18936 1.21385 0.93951 0.90982 1.52196 0.92275 1.19678 0.88430 0.84834 0.92591 1.87822 1.35283 1.14250 1.94780 1.22248 0.95728 0.83968 0.95337 0.94544 1.22022 1.00855 0.97993 0.96885 1.21489 0.98761 0.93071 1.01507 1.21562 0.99862 0.98605 0.95201 1.21674 1.01179 0.94237 0.97451 1.21182 0.98282 0.94319 0.94890 0.91601 1.21030 0.96138 0.98784 0.93749 1.21571 0.98023 0.99374 0.95286 1.21551 0.97696 1.00887 0.95667 1.21481 0.94636 0.99981 0.98586 1.21549 0.99763 0.98876 0.95849 1.21617 0.96580 1.01407 0.95222 0.92052 1.00388 1.00478 0.94609 0.91912 0.92271 0.90597 0.91650 0.89537 0.89124 0.91528 0.94561 0.89823 0.92314 0.93960 0.90196 0.91497 0.90455 0.94596 0.91605 0.95388 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 45.72 29.54 68.60 2.03 47.75 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.22 12.99 5.50 71.24 0.39 13.38 16 10 O -0.40 -20.64 9.20 -148.98 -1.37 -22.01 16 11 C 0.09 3.36 1.81 30.59 0.06 3.41 16 12 H 0.04 1.53 6.22 -2.39 -0.01 1.51 16 13 C -0.14 -4.89 5.54 30.59 0.17 -4.72 16 14 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 15 C -0.12 -2.33 5.92 30.60 0.18 -2.15 16 16 C -0.11 -2.38 4.46 30.59 0.14 -2.25 16 17 C -0.07 -2.09 1.70 -10.80 -0.02 -2.10 16 18 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 19 C -0.08 -2.43 1.89 -10.79 -0.02 -2.45 16 20 C -0.11 -2.44 4.97 30.60 0.15 -2.28 16 21 C -0.12 -2.63 5.92 30.59 0.18 -2.45 16 22 C -0.11 -2.29 5.92 30.59 0.18 -2.10 16 23 C -0.12 -3.34 5.92 30.59 0.18 -3.16 16 24 C -0.11 -3.28 4.46 30.59 0.14 -3.14 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H -0.02 -1.34 7.87 -2.39 -0.02 -1.36 16 27 H -0.02 -1.40 8.09 -2.39 -0.02 -1.42 16 28 H 0.04 1.41 7.87 -2.39 -0.02 1.39 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.57 6.58 -2.39 -0.02 1.56 16 35 H 0.07 1.47 6.34 -2.38 -0.02 1.46 16 36 H 0.04 1.46 7.52 -2.39 -0.02 1.44 16 37 H 0.08 1.55 6.58 -2.39 -0.02 1.53 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.03 1.01 6.58 -2.39 -0.02 0.99 16 46 H 0.08 2.04 6.34 -2.39 -0.02 2.02 16 Total: -1.00 -68.86 340.14 4.46 -64.40 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.91 Total: 12.68 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 2.61 Total: -45.47 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.37 Total: -22.01 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -68.86 4.46 -64.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.316 kcal (2) G-P(sol) polarization free energy of solvation -68.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds