Wall clock time and date at job start Mon Mar 30 2020 00:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47164 * 269.99961 * 3 2 1 5 5 H 1.48496 * 109.47227 * 29.99865 * 3 2 1 6 6 H 1.48499 * 109.47124 * 149.99897 * 3 2 1 7 7 C 1.37874 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00595 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00127 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99895 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46990 * 329.99466 * 11 10 9 13 13 C 1.52999 * 109.47129 * 89.99835 * 11 10 9 14 14 C 1.52997 * 109.47317 * 59.99943 * 13 11 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 11 16 16 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 17 17 C 1.52997 * 109.46717 * 209.99772 * 11 10 9 18 18 H 1.09002 * 109.47497 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47415 * 59.99626 * 17 11 10 20 20 C 1.52997 * 109.46817 * 59.99873 * 19 17 11 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 179.97438 * 19 17 11 25 25 H 0.97006 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47089 * 59.99765 * 9 7 2 27 27 H 1.09005 * 109.46977 * 299.99618 * 9 7 2 28 28 H 1.09002 * 109.46716 * 179.97438 * 13 11 10 29 29 H 1.08996 * 109.46929 * 299.99047 * 13 11 10 30 30 H 1.09001 * 109.46832 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47153 * 299.99641 * 14 13 11 32 32 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 33 33 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47075 * 300.00932 * 16 15 14 35 35 H 1.08996 * 109.47407 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47070 * 300.00053 * 19 17 11 37 37 H 1.08996 * 109.47853 * 300.00202 * 20 19 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 20 19 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 41 41 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 42 42 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 45 45 H 1.08992 * 109.47399 * 300.00166 * 24 19 17 46 46 H 1.09004 * 109.46724 * 60.00652 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.4123 -2.6543 0.0010 12 1 5.8452 -1.7957 -0.5122 13 6 5.9195 -2.6951 1.4439 14 6 5.3119 -3.9004 2.1643 15 6 5.7222 -5.1858 1.4430 16 6 5.2149 -5.1451 0.0001 17 6 5.8225 -3.9397 -0.7203 18 1 6.9091 -4.0257 -0.7199 19 6 5.3152 -3.8990 -2.1632 20 6 5.9228 -2.6938 -2.8836 21 6 5.4160 -2.6533 -4.3266 22 6 5.8267 -3.9388 -5.0476 23 6 5.2191 -5.1441 -4.3272 24 6 5.7260 -5.1842 -2.8847 25 1 -0.4850 0.8401 -0.0004 26 1 3.8744 -0.6809 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 7.0061 -2.7817 1.4447 29 1 5.6274 -1.7793 1.9577 30 1 5.6737 -3.9296 3.1921 31 1 4.2253 -3.8143 2.1635 32 1 6.8088 -5.2719 1.4437 33 1 5.2889 -6.0444 1.9560 34 1 4.1283 -5.0589 -0.0007 35 1 5.5076 -6.0606 -0.5140 36 1 4.2286 -3.8129 -2.1640 37 1 5.6306 -1.7780 -2.3698 38 1 7.0094 -2.7799 -2.8828 39 1 5.8493 -1.7949 -4.8400 40 1 4.3294 -2.5674 -4.3278 41 1 6.9134 -4.0247 -5.0465 42 1 5.4653 -3.9102 -6.0756 43 1 5.5113 -6.0598 -4.8411 44 1 4.1325 -5.0581 -4.3284 45 1 6.8125 -5.2699 -2.8839 46 1 5.2933 -6.0430 -2.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:35 Heat of formation + Delta-G solvation = -99.204856 kcal Electronic energy + Delta-G solvation = -22019.875670 eV Core-core repulsion = 19100.129150 eV Total energy + Delta-G solvation = -2919.746520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71946 -37.49490 -35.33737 -32.57912 -32.34221 -30.75191 -29.63569 -28.32935 -27.26908 -23.15205 -22.98660 -21.99047 -21.23590 -20.53962 -19.43473 -19.04348 -16.80220 -15.93303 -15.30085 -14.93230 -14.53493 -14.33804 -14.20694 -13.96581 -13.63215 -13.20606 -13.00579 -12.75397 -12.58613 -12.24619 -12.10623 -11.94036 -11.70864 -11.47920 -11.25443 -10.96356 -10.92556 -10.89247 -10.78481 -10.54505 -10.31600 -10.19260 -10.12166 -10.05766 -9.80723 -9.57806 -9.30050 -9.09002 -8.74599 -8.34149 -6.10280 -4.08398 3.24604 3.31932 3.33407 4.36470 4.65122 4.78898 4.91490 4.93317 5.13468 5.17938 5.21979 5.23385 5.39610 5.41559 5.60429 5.64649 5.66070 5.71120 5.72676 5.76489 5.77573 5.86824 5.89616 5.96771 6.04518 6.10444 6.14897 6.20308 6.25575 6.30016 6.32914 6.41264 6.44891 6.52791 6.53254 6.60054 6.66072 6.72094 6.73341 6.81850 6.95544 7.06629 7.63985 8.10153 8.71619 9.02108 9.50067 11.02862 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.007066 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.031755 B = 3961.841481 C = 5139.719012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.170 3.830 10 O -0.363 6.363 11 C 0.088 3.912 12 H 0.050 0.950 13 C -0.140 4.140 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.072 4.072 18 H 0.067 0.933 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.265 0.735 26 H -0.001 1.001 27 H -0.005 1.005 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.946 -8.755 -4.321 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.094 3.906 10 O -0.282 6.282 11 C 0.030 3.970 12 H 0.068 0.932 13 C -0.178 4.178 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.090 4.090 18 H 0.085 0.915 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.650 -8.788 -4.318 17.621 hybrid contribution 0.579 1.330 0.047 1.451 sum 15.229 -7.459 -4.271 17.487 Atomic orbital electron populations 1.69876 1.06033 1.26970 1.50618 1.24750 0.94746 0.98640 0.94769 0.86905 0.80426 0.84031 0.78743 1.19989 1.20847 1.19126 1.20884 0.88363 0.95149 1.50801 0.90032 1.20580 0.95980 0.80066 0.93924 1.87939 1.17083 1.28702 1.94481 1.21949 0.84812 0.96554 0.93729 0.93222 1.22009 0.99249 0.98970 0.97535 1.21400 1.02379 0.93915 0.97407 1.21494 0.99779 0.97619 0.96291 1.21543 1.02057 0.96708 0.94519 1.21213 0.98790 0.94797 0.94214 0.91477 1.21134 1.02004 0.93828 0.92933 1.21609 0.99369 0.98864 0.95328 1.21529 1.01631 0.96874 0.95756 1.21516 1.00137 0.95210 0.98531 1.21525 1.00877 0.97435 0.95896 1.21615 1.00184 0.98080 0.95131 0.92455 0.98330 0.98736 0.92421 0.92048 0.93158 0.90520 0.93000 0.92597 0.90595 0.92606 0.89567 0.91715 0.92827 0.92572 0.91552 0.92536 0.92605 0.92668 0.91834 0.92701 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.51 -15.09 9.99 -34.44 -0.34 -15.43 16 8 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 9 C 0.17 4.24 4.57 36.01 0.16 4.40 16 10 O -0.36 -8.01 7.95 -35.23 -0.28 -8.29 16 11 C 0.09 1.53 2.00 -26.73 -0.05 1.48 16 12 H 0.05 0.86 6.07 -51.93 -0.32 0.55 16 13 C -0.14 -2.20 5.63 -26.73 -0.15 -2.35 16 14 C -0.11 -1.72 5.78 -26.73 -0.15 -1.87 16 15 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 16 C -0.11 -1.57 4.71 -26.73 -0.13 -1.69 16 17 C -0.07 -1.04 1.61 -90.62 -0.15 -1.18 16 18 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.08 -1.16 1.63 -90.62 -0.15 -1.31 16 20 C -0.11 -1.60 4.85 -26.73 -0.13 -1.73 16 21 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 22 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 23 C -0.12 -1.38 5.92 -26.76 -0.16 -1.53 16 24 C -0.11 -1.36 4.85 -26.76 -0.13 -1.49 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.00 -0.02 6.93 -51.93 -0.36 -0.38 16 27 H -0.01 -0.12 7.51 -51.93 -0.39 -0.51 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 35 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 37 H 0.06 1.03 6.43 -51.93 -0.33 0.70 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -29.83 337.82 -9.79 -39.62 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.76 Total: -0.84 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.95 Total: -25.56 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.28 Total: -8.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.83 -9.79 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.580 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds