Wall clock time and date at job start Mon Mar 30 2020 00:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47164 * 269.99961 * 3 2 1 5 5 H 1.48496 * 109.47227 * 29.99865 * 3 2 1 6 6 H 1.48499 * 109.47124 * 149.99897 * 3 2 1 7 7 C 1.37874 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00595 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00127 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99895 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46990 * 329.99466 * 11 10 9 13 13 C 1.52999 * 109.47129 * 89.99835 * 11 10 9 14 14 C 1.52997 * 109.47317 * 59.99943 * 13 11 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 11 16 16 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 17 17 C 1.52997 * 109.46717 * 209.99772 * 11 10 9 18 18 H 1.09002 * 109.47497 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47415 * 59.99626 * 17 11 10 20 20 C 1.52997 * 109.46817 * 59.99873 * 19 17 11 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 179.97438 * 19 17 11 25 25 H 0.97006 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47089 * 59.99765 * 9 7 2 27 27 H 1.09005 * 109.46977 * 299.99618 * 9 7 2 28 28 H 1.09002 * 109.46716 * 179.97438 * 13 11 10 29 29 H 1.08996 * 109.46929 * 299.99047 * 13 11 10 30 30 H 1.09001 * 109.46832 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47153 * 299.99641 * 14 13 11 32 32 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 33 33 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47075 * 300.00932 * 16 15 14 35 35 H 1.08996 * 109.47407 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47070 * 300.00053 * 19 17 11 37 37 H 1.08996 * 109.47853 * 300.00202 * 20 19 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 20 19 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 41 41 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 42 42 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 45 45 H 1.08992 * 109.47399 * 300.00166 * 24 19 17 46 46 H 1.09004 * 109.46724 * 60.00652 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.4123 -2.6543 0.0010 12 1 5.8452 -1.7957 -0.5122 13 6 5.9195 -2.6951 1.4439 14 6 5.3119 -3.9004 2.1643 15 6 5.7222 -5.1858 1.4430 16 6 5.2149 -5.1451 0.0001 17 6 5.8225 -3.9397 -0.7203 18 1 6.9091 -4.0257 -0.7199 19 6 5.3152 -3.8990 -2.1632 20 6 5.9228 -2.6938 -2.8836 21 6 5.4160 -2.6533 -4.3266 22 6 5.8267 -3.9388 -5.0476 23 6 5.2191 -5.1441 -4.3272 24 6 5.7260 -5.1842 -2.8847 25 1 -0.4850 0.8401 -0.0004 26 1 3.8744 -0.6809 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 7.0061 -2.7817 1.4447 29 1 5.6274 -1.7793 1.9577 30 1 5.6737 -3.9296 3.1921 31 1 4.2253 -3.8143 2.1635 32 1 6.8088 -5.2719 1.4437 33 1 5.2889 -6.0444 1.9560 34 1 4.1283 -5.0589 -0.0007 35 1 5.5076 -6.0606 -0.5140 36 1 4.2286 -3.8129 -2.1640 37 1 5.6306 -1.7780 -2.3698 38 1 7.0094 -2.7799 -2.8828 39 1 5.8493 -1.7949 -4.8400 40 1 4.3294 -2.5674 -4.3278 41 1 6.9134 -4.0247 -5.0465 42 1 5.4653 -3.9102 -6.0756 43 1 5.5113 -6.0598 -4.8411 44 1 4.1325 -5.0581 -4.3284 45 1 6.8125 -5.2699 -2.8839 46 1 5.2933 -6.0430 -2.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:34 Heat of formation + Delta-G solvation = -114.807113 kcal Electronic energy + Delta-G solvation = -22020.552234 eV Core-core repulsion = 19100.129150 eV Total energy + Delta-G solvation = -2920.423084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96406 -38.71156 -36.88369 -34.78168 -33.46693 -31.85178 -30.95155 -30.00402 -28.76658 -24.34086 -24.12936 -23.98183 -22.40099 -21.65152 -20.57501 -20.32145 -18.98240 -17.37759 -16.75792 -16.44281 -16.15085 -15.78742 -15.27653 -15.07055 -14.89922 -14.69678 -14.48896 -14.26837 -13.85916 -13.66717 -13.48623 -13.12717 -12.93221 -12.82217 -12.72159 -12.52320 -12.49808 -12.12071 -11.94609 -11.88470 -11.64051 -11.54156 -11.45692 -11.26505 -11.19978 -11.12034 -10.93771 -10.67967 -10.42843 -10.04068 -8.39447 -6.45844 1.27912 1.30630 1.41445 2.25595 2.93174 3.15746 3.68651 3.76978 3.88373 3.99660 4.08575 4.10017 4.29456 4.30026 4.45197 4.50610 4.55416 4.59179 4.62647 4.64433 4.66480 4.70900 4.76013 4.84458 4.88441 4.92661 4.96695 5.02781 5.04241 5.13296 5.19532 5.27554 5.30338 5.34219 5.35695 5.38915 5.43005 5.46284 5.49326 5.52619 5.61907 5.64745 5.77145 5.99079 6.58240 6.84322 7.19162 8.77849 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.007066 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.031755 B = 3961.841481 C = 5139.719012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.537 4.537 8 H 0.029 0.971 9 C 0.186 3.814 10 O -0.383 6.383 11 C 0.076 3.924 12 H 0.051 0.949 13 C -0.139 4.139 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.066 4.066 18 H 0.101 0.899 19 C -0.079 4.079 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.272 0.728 26 H 0.002 0.998 27 H 0.000 1.000 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.038 -8.831 -4.746 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.575 4.575 8 H 0.047 0.953 9 C 0.110 3.890 10 O -0.303 6.303 11 C 0.018 3.982 12 H 0.069 0.931 13 C -0.176 4.176 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.147 4.147 17 C -0.085 4.085 18 H 0.119 0.881 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.144 4.144 25 H 0.081 0.919 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.749 -8.888 -4.742 21.284 hybrid contribution -0.779 1.255 0.180 1.488 sum 17.971 -7.632 -4.562 20.050 Atomic orbital electron populations 1.70032 1.08131 1.28612 1.51368 1.25774 0.95734 1.03145 0.93658 0.85706 0.79499 0.78055 0.79744 1.18480 1.19623 1.17216 1.21134 0.91002 0.93602 1.51770 0.95303 1.20184 0.93054 0.81778 0.93940 1.87924 1.20782 1.26852 1.94702 1.22356 0.81921 0.98376 0.95571 0.93076 1.22023 1.01307 0.98373 0.95919 1.21396 0.99711 0.95095 0.99017 1.21484 1.01526 0.96614 0.94992 1.21522 0.99498 0.97736 0.95901 1.21254 1.00461 0.93181 0.93564 0.88115 1.21057 0.99077 0.95788 0.93813 1.21593 1.00781 0.97305 0.95327 1.21544 0.99828 0.98777 0.95895 1.21491 1.01230 0.93579 0.98531 1.21547 0.99614 0.98703 0.96039 1.21572 1.01526 0.96325 0.94942 0.91887 0.98052 0.98189 0.88806 0.93814 0.91176 0.94816 0.89993 0.91724 0.94784 0.90128 0.94466 0.94350 0.90196 0.91507 0.94535 0.90562 0.91741 0.90453 0.94063 0.90291 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.01 0.89 5.47 84.65 0.46 1.36 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.54 -33.50 9.99 25.60 0.26 -33.24 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.19 9.64 4.57 71.24 0.33 9.96 16 10 O -0.38 -17.84 7.95 -148.98 -1.18 -19.02 16 11 C 0.08 2.59 2.00 30.59 0.06 2.65 16 12 H 0.05 1.73 6.07 -2.39 -0.01 1.72 16 13 C -0.14 -4.15 5.63 30.59 0.17 -3.98 16 14 C -0.11 -3.37 5.78 30.59 0.18 -3.20 16 15 C -0.11 -2.61 5.92 30.60 0.18 -2.43 16 16 C -0.11 -2.97 4.71 30.60 0.14 -2.83 16 17 C -0.07 -1.81 1.61 -10.79 -0.02 -1.83 16 18 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 19 C -0.08 -2.25 1.63 -10.79 -0.02 -2.27 16 20 C -0.11 -3.04 4.85 30.59 0.15 -2.89 16 21 C -0.12 -3.15 5.92 30.60 0.18 -2.97 16 22 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 23 C -0.12 -2.60 5.92 30.58 0.18 -2.42 16 24 C -0.11 -2.33 4.85 30.58 0.15 -2.18 16 25 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 26 H 0.00 0.09 6.93 -2.39 -0.02 0.07 16 27 H 0.00 0.02 7.51 -2.38 -0.02 0.01 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.44 7.87 -2.39 -0.02 1.43 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.20 7.68 -2.39 -0.02 1.18 16 35 H 0.08 1.79 6.43 -2.39 -0.02 1.78 16 36 H 0.04 1.42 7.68 -2.39 -0.02 1.40 16 37 H 0.04 1.22 6.43 -2.39 -0.02 1.20 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.38 6.43 -2.39 -0.02 1.37 16 Total: -1.00 -69.94 337.82 4.43 -65.50 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.85 Total: 15.38 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 2.58 Total: -48.33 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.18 Total: -19.02 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -69.94 4.43 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.302 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds