Wall clock time and date at job start Mon Mar 30 2020 00:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46807 * 29.99983 * 11 10 9 13 13 C 1.53002 * 109.47072 * 269.99829 * 11 10 9 14 14 C 1.53001 * 109.47052 * 299.99995 * 13 11 10 15 15 C 1.53007 * 109.46948 * 300.00080 * 14 13 11 16 16 C 1.52995 * 109.47115 * 59.99867 * 15 14 13 17 17 C 1.52998 * 109.47746 * 300.00212 * 16 15 14 18 18 H 1.09005 * 109.46280 * 300.00139 * 17 16 15 19 19 C 1.52989 * 109.47486 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47387 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47647 * 180.02562 * 20 19 17 22 22 C 1.53007 * 109.47115 * 60.00168 * 21 20 19 23 23 C 1.53001 * 109.46948 * 300.00133 * 22 21 20 24 24 C 1.53002 * 109.47052 * 59.99920 * 23 22 21 25 25 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.46890 * 59.99978 * 13 11 10 29 29 H 1.09000 * 109.46986 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.46972 * 59.99771 * 14 13 11 31 31 H 1.08997 * 109.47114 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.46363 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47026 * 300.00189 * 15 14 13 34 34 H 1.09000 * 109.46910 * 60.00251 * 16 15 14 35 35 H 1.08994 * 109.46987 * 179.97438 * 16 15 14 36 36 H 1.08997 * 109.47547 * 299.99731 * 19 17 16 37 37 H 1.09000 * 109.47307 * 300.00266 * 20 19 17 38 38 H 1.09001 * 109.47036 * 60.00342 * 20 19 17 39 39 H 1.09004 * 109.47208 * 300.00817 * 21 20 19 40 40 H 1.09002 * 109.47915 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47294 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47032 * 59.99787 * 22 21 20 43 43 H 1.09000 * 109.47411 * 299.99953 * 23 22 21 44 44 H 1.09001 * 109.47259 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.46971 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46986 * 59.99772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0021 12 1 5.8444 -1.7960 0.5166 13 6 5.9220 -2.6940 -1.4400 14 6 5.3154 -3.8988 -2.1622 15 6 5.7246 -5.1847 -1.4409 16 6 5.2151 -5.1449 0.0011 17 6 5.8215 -3.9401 0.7233 18 1 6.9081 -4.0262 0.7241 19 6 5.3115 -3.8999 2.1651 20 6 5.9184 -2.6955 2.8875 21 6 5.4088 -2.6556 4.3296 22 6 5.8175 -3.9417 5.0506 23 6 5.2106 -5.1462 4.3283 24 6 5.7202 -5.1860 2.8862 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 5.6305 -1.7779 -1.9537 29 1 7.0086 -2.7797 -1.4392 30 1 4.2289 -3.8127 -2.1629 31 1 5.6781 -3.9269 -3.1896 32 1 5.2928 -6.0430 -1.9557 33 1 6.8112 -5.2708 -1.4401 34 1 4.1285 -5.0588 0.0003 35 1 5.5062 -6.0611 0.5147 36 1 4.2249 -3.8136 2.1640 37 1 7.0049 -2.7821 2.8887 38 1 5.6276 -1.7792 2.3736 39 1 4.3222 -2.5692 4.3288 40 1 5.8409 -1.7973 4.8441 41 1 5.4542 -3.9136 6.0778 42 1 6.9041 -4.0282 5.0514 43 1 4.1240 -5.0598 4.3275 44 1 5.5021 -6.0625 4.8417 45 1 5.2881 -6.0444 2.3718 46 1 6.8067 -5.2725 2.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:37 Heat of formation + Delta-G solvation = -99.193199 kcal Electronic energy + Delta-G solvation = -22020.691750 eV Core-core repulsion = 19100.945736 eV Total energy + Delta-G solvation = -2919.746014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71873 -37.49212 -35.33771 -32.57853 -32.34211 -30.74850 -29.63604 -28.32881 -27.26869 -23.15287 -22.98590 -21.99063 -21.23560 -20.53981 -19.43332 -19.04487 -16.80180 -15.92635 -15.30332 -14.93907 -14.52748 -14.34226 -14.20936 -13.96231 -13.61918 -13.21932 -13.00718 -12.76594 -12.55638 -12.27181 -12.08941 -11.94016 -11.70799 -11.47868 -11.24986 -10.96673 -10.92314 -10.86132 -10.82946 -10.54243 -10.32395 -10.15739 -10.12353 -10.06251 -9.82616 -9.57094 -9.29999 -9.08016 -8.75285 -8.34182 -6.10262 -4.08392 3.24686 3.31948 3.33336 4.36458 4.65175 4.79084 4.91627 4.93369 5.13410 5.17981 5.21915 5.23410 5.39656 5.41604 5.60494 5.64677 5.66200 5.71163 5.72768 5.76524 5.77587 5.86894 5.89631 5.96795 6.04473 6.10536 6.14891 6.20451 6.25431 6.30139 6.32900 6.41546 6.45041 6.52784 6.53221 6.60113 6.66046 6.72243 6.73465 6.81849 6.95644 7.06438 7.63987 8.10196 8.71650 9.02159 9.50073 11.02883 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.007067 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.356039 B = 3960.949770 C = 5138.941370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.170 3.830 10 O -0.363 6.363 11 C 0.088 3.912 12 H 0.050 0.950 13 C -0.140 4.140 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.072 4.072 18 H 0.067 0.933 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.265 0.735 26 H 0.000 1.000 27 H -0.006 1.006 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 -8.755 4.369 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.094 3.906 10 O -0.282 6.282 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.178 4.178 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.090 4.090 18 H 0.085 0.915 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.017 0.983 27 H 0.012 0.988 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.644 -8.789 4.373 17.630 hybrid contribution 0.578 1.330 -0.085 1.452 sum 15.222 -7.459 4.287 17.485 Atomic orbital electron populations 1.69876 1.06032 1.26969 1.50622 1.24753 0.94747 0.98640 0.94768 0.86904 0.80419 0.84027 0.78735 1.20013 1.20848 1.19114 1.20884 0.88363 0.95149 1.50800 0.90033 1.20580 0.95979 0.80067 0.93926 1.87937 1.17083 1.28704 1.94480 1.21950 0.84812 0.96570 0.93726 0.93210 1.22012 0.99257 0.98966 0.97535 1.21400 1.02385 0.93920 0.97400 1.21492 0.99780 0.97612 0.96292 1.21538 1.02059 0.96714 0.94515 1.21208 0.98790 0.94786 0.94221 0.91474 1.21131 1.02006 0.93826 0.92928 1.21607 0.99356 0.98872 0.95331 1.21527 1.01632 0.96862 0.95760 1.21515 1.00142 0.95209 0.98523 1.21536 1.00870 0.97434 0.95893 1.21627 1.00180 0.98072 0.95140 0.92456 0.98261 0.98802 0.92060 0.92411 0.90526 0.93157 0.92598 0.93005 0.90604 0.92607 0.89564 0.92832 0.91707 0.91557 0.92575 0.92603 0.92537 0.91828 0.92673 0.91877 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.51 -15.09 9.99 -34.44 -0.34 -15.43 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.17 4.24 4.57 36.01 0.16 4.40 16 10 O -0.36 -8.01 7.95 -35.23 -0.28 -8.29 16 11 C 0.09 1.53 2.00 -26.73 -0.05 1.47 16 12 H 0.05 0.87 6.07 -51.93 -0.32 0.55 16 13 C -0.14 -2.20 5.63 -26.73 -0.15 -2.35 16 14 C -0.11 -1.72 5.78 -26.73 -0.15 -1.87 16 15 C -0.11 -1.51 5.92 -26.73 -0.16 -1.66 16 16 C -0.11 -1.57 4.70 -26.73 -0.13 -1.69 16 17 C -0.07 -1.04 1.61 -90.63 -0.15 -1.18 16 18 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.08 -1.17 1.63 -90.62 -0.15 -1.31 16 20 C -0.11 -1.61 4.85 -26.73 -0.13 -1.74 16 21 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 22 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 23 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 24 C -0.11 -1.36 4.85 -26.73 -0.13 -1.49 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.00 -0.01 7.14 -51.93 -0.37 -0.38 16 27 H -0.01 -0.14 7.30 -51.93 -0.38 -0.52 16 28 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 35 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.04 6.43 -51.93 -0.33 0.71 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -29.83 337.82 -9.79 -39.62 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -8.76 Total: -0.83 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -1.95 Total: -25.56 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.28 Total: -8.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.83 -9.79 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.573 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds