Wall clock time and date at job start Mon Mar 30 2020 00:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46807 * 29.99983 * 11 10 9 13 13 C 1.53002 * 109.47072 * 269.99829 * 11 10 9 14 14 C 1.53001 * 109.47052 * 299.99995 * 13 11 10 15 15 C 1.53007 * 109.46948 * 300.00080 * 14 13 11 16 16 C 1.52995 * 109.47115 * 59.99867 * 15 14 13 17 17 C 1.52998 * 109.47746 * 300.00212 * 16 15 14 18 18 H 1.09005 * 109.46280 * 300.00139 * 17 16 15 19 19 C 1.52989 * 109.47486 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47387 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47647 * 180.02562 * 20 19 17 22 22 C 1.53007 * 109.47115 * 60.00168 * 21 20 19 23 23 C 1.53001 * 109.46948 * 300.00133 * 22 21 20 24 24 C 1.53002 * 109.47052 * 59.99920 * 23 22 21 25 25 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.46890 * 59.99978 * 13 11 10 29 29 H 1.09000 * 109.46986 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.46972 * 59.99771 * 14 13 11 31 31 H 1.08997 * 109.47114 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.46363 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47026 * 300.00189 * 15 14 13 34 34 H 1.09000 * 109.46910 * 60.00251 * 16 15 14 35 35 H 1.08994 * 109.46987 * 179.97438 * 16 15 14 36 36 H 1.08997 * 109.47547 * 299.99731 * 19 17 16 37 37 H 1.09000 * 109.47307 * 300.00266 * 20 19 17 38 38 H 1.09001 * 109.47036 * 60.00342 * 20 19 17 39 39 H 1.09004 * 109.47208 * 300.00817 * 21 20 19 40 40 H 1.09002 * 109.47915 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47294 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47032 * 59.99787 * 22 21 20 43 43 H 1.09000 * 109.47411 * 299.99953 * 23 22 21 44 44 H 1.09001 * 109.47259 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.46971 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46986 * 59.99772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0021 12 1 5.8444 -1.7960 0.5166 13 6 5.9220 -2.6940 -1.4400 14 6 5.3154 -3.8988 -2.1622 15 6 5.7246 -5.1847 -1.4409 16 6 5.2151 -5.1449 0.0011 17 6 5.8215 -3.9401 0.7233 18 1 6.9081 -4.0262 0.7241 19 6 5.3115 -3.8999 2.1651 20 6 5.9184 -2.6955 2.8875 21 6 5.4088 -2.6556 4.3296 22 6 5.8175 -3.9417 5.0506 23 6 5.2106 -5.1462 4.3283 24 6 5.7202 -5.1860 2.8862 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 5.6305 -1.7779 -1.9537 29 1 7.0086 -2.7797 -1.4392 30 1 4.2289 -3.8127 -2.1629 31 1 5.6781 -3.9269 -3.1896 32 1 5.2928 -6.0430 -1.9557 33 1 6.8112 -5.2708 -1.4401 34 1 4.1285 -5.0588 0.0003 35 1 5.5062 -6.0611 0.5147 36 1 4.2249 -3.8136 2.1640 37 1 7.0049 -2.7821 2.8887 38 1 5.6276 -1.7792 2.3736 39 1 4.3222 -2.5692 4.3288 40 1 5.8409 -1.7973 4.8441 41 1 5.4542 -3.9136 6.0778 42 1 6.9041 -4.0282 5.0514 43 1 4.1240 -5.0598 4.3275 44 1 5.5021 -6.0625 4.8417 45 1 5.2881 -6.0444 2.3718 46 1 6.8067 -5.2725 2.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:37 Heat of formation + Delta-G solvation = -114.793923 kcal Electronic energy + Delta-G solvation = -22021.368248 eV Core-core repulsion = 19100.945736 eV Total energy + Delta-G solvation = -2920.422512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96442 -38.71014 -36.88345 -34.78125 -33.46708 -31.85114 -30.95124 -30.00360 -28.76665 -24.34156 -24.13005 -23.98264 -22.40166 -21.65208 -20.57632 -20.32253 -18.98181 -17.36547 -16.77208 -16.46086 -16.12165 -15.79681 -15.27597 -15.06573 -14.88843 -14.74643 -14.44583 -14.27255 -13.85422 -13.69208 -13.46890 -13.12484 -12.92309 -12.82953 -12.72370 -12.52945 -12.49827 -12.12907 -11.94696 -11.87590 -11.63946 -11.54143 -11.44174 -11.27546 -11.19992 -11.13582 -10.92465 -10.68072 -10.42903 -10.04193 -8.39437 -6.45842 1.27940 1.30716 1.41470 2.25613 2.93201 3.15716 3.68708 3.76927 3.88260 3.99601 4.08586 4.09984 4.29412 4.29995 4.45246 4.50702 4.55220 4.59066 4.62688 4.64626 4.66348 4.70682 4.75956 4.84342 4.88331 4.92775 4.97021 5.02549 5.04228 5.13296 5.19412 5.27476 5.30219 5.34343 5.35788 5.38830 5.42946 5.46302 5.49296 5.52582 5.61837 5.64743 5.77075 5.99103 6.58274 6.84361 7.19175 8.77860 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.007067 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.356039 B = 3960.949770 C = 5138.941370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.537 4.537 8 H 0.029 0.971 9 C 0.187 3.813 10 O -0.383 6.383 11 C 0.076 3.924 12 H 0.051 0.949 13 C -0.139 4.139 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.066 4.066 18 H 0.101 0.899 19 C -0.079 4.079 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.107 4.107 25 H 0.272 0.728 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.026 -8.837 4.757 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.575 4.575 8 H 0.047 0.953 9 C 0.111 3.889 10 O -0.303 6.303 11 C 0.018 3.982 12 H 0.069 0.931 13 C -0.176 4.176 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.146 4.146 17 C -0.085 4.085 18 H 0.119 0.881 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.144 4.144 25 H 0.081 0.919 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.737 -8.894 4.759 21.279 hybrid contribution -0.777 1.257 -0.208 1.493 sum 17.959 -7.637 4.551 20.039 Atomic orbital electron populations 1.70031 1.08133 1.28613 1.51368 1.25777 0.95733 1.03147 0.93653 0.85706 0.79472 0.78043 0.79772 1.18407 1.19658 1.17258 1.21134 0.91000 0.93602 1.51776 0.95305 1.20183 0.93052 0.81777 0.93937 1.87922 1.20781 1.26855 1.94703 1.22355 0.81918 0.98355 0.95598 0.93133 1.22027 1.01306 0.98415 0.95883 1.21396 0.99721 0.95094 0.99011 1.21482 1.01524 0.96623 0.94987 1.21516 0.99497 0.97729 0.95905 1.21251 1.00460 0.93187 0.93565 0.88119 1.21054 0.99072 0.95781 0.93824 1.21588 1.00768 0.97286 0.95341 1.21542 0.99830 0.98777 0.95885 1.21489 1.01238 0.93563 0.98528 1.21558 0.99609 0.98706 0.96031 1.21585 1.01526 0.96307 0.94956 0.91887 0.98069 0.98179 0.93720 0.88804 0.94815 0.91163 0.91725 0.90001 0.94793 0.90135 0.94469 0.90204 0.94429 0.94533 0.91520 0.91720 0.90563 0.94052 0.90442 0.91781 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.01 0.89 5.47 84.65 0.46 1.36 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.54 -33.50 9.99 25.60 0.26 -33.24 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.19 9.64 4.57 71.24 0.33 9.97 16 10 O -0.38 -17.85 7.95 -148.98 -1.18 -19.03 16 11 C 0.08 2.59 2.00 30.59 0.06 2.65 16 12 H 0.05 1.72 6.07 -2.39 -0.01 1.71 16 13 C -0.14 -4.14 5.63 30.60 0.17 -3.96 16 14 C -0.11 -3.36 5.78 30.60 0.18 -3.19 16 15 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 16 C -0.11 -2.97 4.70 30.59 0.14 -2.83 16 17 C -0.07 -1.82 1.61 -10.80 -0.02 -1.84 16 18 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 19 C -0.08 -2.26 1.63 -10.80 -0.02 -2.27 16 20 C -0.11 -3.05 4.85 30.59 0.15 -2.90 16 21 C -0.12 -3.16 5.92 30.59 0.18 -2.98 16 22 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 23 C -0.12 -2.60 5.92 30.60 0.18 -2.42 16 24 C -0.11 -2.33 4.85 30.60 0.15 -2.18 16 25 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 26 H 0.00 0.09 7.14 -2.39 -0.02 0.07 16 27 H 0.00 0.03 7.30 -2.39 -0.02 0.01 16 28 H 0.04 1.46 7.87 -2.39 -0.02 1.44 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 1.20 7.68 -2.39 -0.02 1.18 16 35 H 0.08 1.79 6.43 -2.39 -0.02 1.78 16 36 H 0.04 1.42 7.68 -2.39 -0.02 1.40 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.21 6.43 -2.39 -0.02 1.19 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.39 6.43 -2.39 -0.02 1.37 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.95 337.82 4.43 -65.51 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.85 Total: 15.40 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 2.58 Total: -48.35 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.18 Total: -19.03 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -69.95 4.43 -65.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.281 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds