Wall clock time and date at job start Mon Mar 30 2020 00:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99875 * 2 1 4 4 H 1.48499 * 109.47364 * 240.00296 * 3 2 1 5 5 H 1.48500 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46880 * 120.00646 * 3 2 1 7 7 C 1.37877 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00594 * 0.27396 * 7 2 1 10 10 O 1.42893 * 109.47350 * 179.72172 * 9 7 2 11 11 C 1.42900 * 113.99982 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47302 * 30.00452 * 11 10 9 13 13 C 1.52998 * 109.47274 * 270.00382 * 11 10 9 14 14 C 1.52997 * 109.47008 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47479 * 59.99936 * 14 13 11 16 16 C 1.52998 * 109.47053 * 300.00036 * 15 14 13 17 17 C 1.52997 * 109.47008 * 59.99675 * 16 15 14 18 18 H 1.08999 * 109.47398 * 60.00035 * 17 16 15 19 19 C 1.52999 * 109.47159 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.46680 * 54.51789 * 19 17 16 21 21 C 1.52998 * 109.47044 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47469 * 59.99788 * 21 20 19 23 23 C 1.53006 * 109.47161 * 300.00140 * 22 21 20 24 24 C 1.52995 * 109.47749 * 294.51945 * 19 17 16 25 25 H 0.96999 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46597 * 299.72634 * 9 7 2 27 27 H 1.09002 * 109.46789 * 59.71732 * 9 7 2 28 28 H 1.09000 * 109.47171 * 299.99716 * 13 11 10 29 29 H 1.08998 * 109.47293 * 60.00382 * 13 11 10 30 30 H 1.08999 * 109.47398 * 299.99965 * 14 13 11 31 31 H 1.09009 * 109.47249 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47471 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.47136 * 60.00063 * 15 14 13 34 34 H 1.09000 * 109.47171 * 300.00005 * 16 15 14 35 35 H 1.09004 * 109.47006 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47268 * 174.51387 * 19 17 16 37 37 H 1.08993 * 109.47093 * 299.99901 * 20 19 17 38 38 H 1.08998 * 109.47517 * 60.00094 * 20 19 17 39 39 H 1.09005 * 109.47162 * 300.00273 * 21 20 19 40 40 H 1.09000 * 109.47391 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47572 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.46967 * 59.99848 * 22 21 20 43 43 H 1.09002 * 109.46942 * 299.99723 * 23 22 21 44 44 H 1.08991 * 109.47155 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47002 * 299.99904 * 24 19 17 46 46 H 1.09002 * 109.47190 * 59.99395 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0074 10 8 2.1797 -3.5853 -0.0131 11 6 1.5651 -4.8754 -0.0193 12 1 0.6052 -4.8182 -0.5325 13 6 1.3463 -5.3430 1.4209 14 6 0.6889 -6.7245 1.4143 15 6 1.5976 -7.7183 0.6879 16 6 1.8165 -7.2507 -0.7523 17 6 2.4738 -5.8691 -0.7456 18 1 3.4337 -5.9259 -0.2323 19 6 2.6933 -5.4018 -2.1859 20 6 1.3665 -5.4529 -2.9463 21 6 1.5857 -4.9849 -4.3863 22 6 2.6018 -5.9011 -5.0713 23 6 3.9285 -5.8501 -4.3109 24 6 3.7090 -6.3185 -2.8705 25 1 -0.4850 0.8400 0.0004 26 1 0.6244 -2.5616 0.8824 27 1 0.6243 -2.5522 -0.8976 28 1 2.3062 -5.4003 1.9342 29 1 0.6992 -4.6349 1.9385 30 1 -0.2709 -6.6677 0.9009 31 1 0.5334 -7.0579 2.4404 32 1 1.1295 -8.7026 0.6836 33 1 2.5575 -7.7752 1.2013 34 1 0.8566 -7.1938 -1.2657 35 1 2.4643 -7.9585 -1.2696 36 1 3.0710 -4.3793 -2.1825 37 1 0.9888 -6.4753 -2.9496 38 1 0.6428 -4.7998 -2.4587 39 1 1.9633 -3.9624 -4.3826 40 1 0.6405 -5.0209 -4.9280 41 1 2.7583 -5.5675 -6.0971 42 1 2.2243 -6.9237 -5.0750 43 1 4.3060 -4.8275 -4.3072 44 1 4.6521 -6.5031 -4.7986 45 1 4.6543 -6.2821 -2.3287 46 1 3.3313 -7.3410 -2.8738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:39 Heat of formation + Delta-G solvation = -104.549887 kcal Electronic energy + Delta-G solvation = -21839.312576 eV Core-core repulsion = 18919.334278 eV Total energy + Delta-G solvation = -2919.978297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74668 -37.30667 -35.54733 -32.67843 -32.32678 -30.54279 -29.55766 -28.00295 -26.70081 -23.34859 -22.71512 -22.46768 -21.51776 -20.56001 -19.75111 -18.51724 -16.42159 -15.72100 -15.38185 -14.73210 -14.43850 -14.25974 -14.11111 -14.04636 -13.81991 -13.49789 -12.94997 -12.79333 -12.56571 -12.09503 -11.89883 -11.88085 -11.56654 -11.41283 -11.18910 -10.96810 -10.86825 -10.77603 -10.70966 -10.56525 -10.41538 -10.28209 -10.17410 -10.00348 -9.74765 -9.62063 -9.32690 -9.03728 -8.70908 -8.05089 -6.08221 -4.09539 3.33122 3.35867 3.39721 4.36188 4.73160 4.84003 4.91300 4.98266 5.07081 5.13848 5.27241 5.28070 5.40857 5.49206 5.59474 5.62537 5.71740 5.72421 5.74170 5.79809 5.82912 5.84943 5.89089 5.94319 5.97526 6.10610 6.21196 6.25823 6.27233 6.33346 6.34896 6.39973 6.42618 6.49344 6.55688 6.57693 6.69583 6.73642 6.83449 6.94246 7.19686 7.49405 7.82863 8.20665 8.66361 9.04996 9.55316 11.03190 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.006248 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.738641 B = 4480.184706 C = 5742.918796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.387 6.387 11 C 0.096 3.904 12 H 0.050 0.950 13 C -0.141 4.141 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.075 4.075 18 H 0.071 0.929 19 C -0.080 4.080 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -15.627 -4.981 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.306 6.306 11 C 0.037 3.963 12 H 0.068 0.932 13 C -0.179 4.179 14 C -0.154 4.154 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.093 4.093 18 H 0.089 0.911 19 C -0.098 4.098 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.095 -15.465 -4.982 16.540 hybrid contribution -0.010 0.963 0.098 0.968 sum 3.085 -14.502 -4.885 15.611 Atomic orbital electron populations 1.69954 1.06067 1.27154 1.50638 1.24928 0.94936 0.99319 0.95234 0.86442 0.79361 0.82130 0.78824 1.20045 1.21180 1.20053 1.21032 0.93962 0.89488 1.50672 0.91721 1.20161 0.88719 0.83655 0.95064 1.87868 1.35359 1.12752 1.94645 1.21850 0.95445 0.85494 0.93504 0.93178 1.22047 1.01093 0.95976 0.98803 1.21495 0.98749 0.95263 0.99853 1.21553 0.99824 0.98021 0.96264 1.21673 1.00923 0.96297 0.96293 1.21183 0.99162 0.93430 0.95536 0.91086 1.21102 0.95008 1.00614 0.93084 1.21658 0.97778 1.00797 0.94994 1.21533 0.98462 0.99762 0.96051 1.21511 0.95753 0.99639 0.98438 1.21540 0.96886 1.01442 0.95835 1.21621 0.99016 0.99092 0.95243 0.92675 0.98008 0.97921 0.91770 0.91808 0.92259 0.92419 0.92560 0.92185 0.91714 0.91894 0.89659 0.92347 0.91728 0.91700 0.92577 0.92672 0.92519 0.91908 0.92726 0.92389 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 8 H 0.06 1.90 7.81 -52.48 -0.41 1.49 16 9 C 0.20 5.43 5.50 36.01 0.20 5.63 16 10 O -0.39 -9.22 9.20 -35.23 -0.32 -9.54 16 11 C 0.10 1.79 1.81 -26.73 -0.05 1.74 16 12 H 0.05 0.97 6.23 -51.93 -0.32 0.64 16 13 C -0.14 -2.39 5.54 -26.73 -0.15 -2.53 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 16 C -0.11 -1.42 4.46 -26.73 -0.12 -1.54 16 17 C -0.07 -1.14 1.70 -90.62 -0.15 -1.29 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.08 -1.21 1.89 -90.62 -0.17 -1.38 16 20 C -0.11 -1.67 4.46 -26.73 -0.12 -1.79 16 21 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 22 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 23 C -0.12 -1.41 5.93 -26.70 -0.16 -1.57 16 24 C -0.11 -1.40 4.97 -26.71 -0.13 -1.54 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.00 0.06 7.87 -51.93 -0.41 -0.35 16 27 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 35 H 0.06 0.70 6.58 -51.93 -0.34 0.36 16 36 H 0.09 1.59 7.52 -51.93 -0.39 1.19 16 37 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 38 H 0.06 1.08 6.58 -51.93 -0.34 0.74 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.06 0.67 6.58 -51.93 -0.34 0.33 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -29.85 340.16 -10.07 -39.92 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.68 Total: -1.48 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.91 Total: -24.72 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.32 Total: -9.54 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.85 -10.07 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.629 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds