Wall clock time and date at job start Mon Mar 30 2020 00:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99875 * 2 1 4 4 H 1.48499 * 109.47364 * 240.00296 * 3 2 1 5 5 H 1.48500 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46880 * 120.00646 * 3 2 1 7 7 C 1.37877 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00594 * 0.27396 * 7 2 1 10 10 O 1.42893 * 109.47350 * 179.72172 * 9 7 2 11 11 C 1.42900 * 113.99982 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47302 * 30.00452 * 11 10 9 13 13 C 1.52998 * 109.47274 * 270.00382 * 11 10 9 14 14 C 1.52997 * 109.47008 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47479 * 59.99936 * 14 13 11 16 16 C 1.52998 * 109.47053 * 300.00036 * 15 14 13 17 17 C 1.52997 * 109.47008 * 59.99675 * 16 15 14 18 18 H 1.08999 * 109.47398 * 60.00035 * 17 16 15 19 19 C 1.52999 * 109.47159 * 179.97438 * 17 16 15 20 20 C 1.53006 * 109.46680 * 54.51789 * 19 17 16 21 21 C 1.52998 * 109.47044 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47469 * 59.99788 * 21 20 19 23 23 C 1.53006 * 109.47161 * 300.00140 * 22 21 20 24 24 C 1.52995 * 109.47749 * 294.51945 * 19 17 16 25 25 H 0.96999 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46597 * 299.72634 * 9 7 2 27 27 H 1.09002 * 109.46789 * 59.71732 * 9 7 2 28 28 H 1.09000 * 109.47171 * 299.99716 * 13 11 10 29 29 H 1.08998 * 109.47293 * 60.00382 * 13 11 10 30 30 H 1.08999 * 109.47398 * 299.99965 * 14 13 11 31 31 H 1.09009 * 109.47249 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47471 * 179.97438 * 15 14 13 33 33 H 1.09000 * 109.47136 * 60.00063 * 15 14 13 34 34 H 1.09000 * 109.47171 * 300.00005 * 16 15 14 35 35 H 1.09004 * 109.47006 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47268 * 174.51387 * 19 17 16 37 37 H 1.08993 * 109.47093 * 299.99901 * 20 19 17 38 38 H 1.08998 * 109.47517 * 60.00094 * 20 19 17 39 39 H 1.09005 * 109.47162 * 300.00273 * 21 20 19 40 40 H 1.09000 * 109.47391 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47572 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.46967 * 59.99848 * 22 21 20 43 43 H 1.09002 * 109.46942 * 299.99723 * 23 22 21 44 44 H 1.08991 * 109.47155 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47002 * 299.99904 * 24 19 17 46 46 H 1.09002 * 109.47190 * 59.99395 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0074 10 8 2.1797 -3.5853 -0.0131 11 6 1.5651 -4.8754 -0.0193 12 1 0.6052 -4.8182 -0.5325 13 6 1.3463 -5.3430 1.4209 14 6 0.6889 -6.7245 1.4143 15 6 1.5976 -7.7183 0.6879 16 6 1.8165 -7.2507 -0.7523 17 6 2.4738 -5.8691 -0.7456 18 1 3.4337 -5.9259 -0.2323 19 6 2.6933 -5.4018 -2.1859 20 6 1.3665 -5.4529 -2.9463 21 6 1.5857 -4.9849 -4.3863 22 6 2.6018 -5.9011 -5.0713 23 6 3.9285 -5.8501 -4.3109 24 6 3.7090 -6.3185 -2.8705 25 1 -0.4850 0.8400 0.0004 26 1 0.6244 -2.5616 0.8824 27 1 0.6243 -2.5522 -0.8976 28 1 2.3062 -5.4003 1.9342 29 1 0.6992 -4.6349 1.9385 30 1 -0.2709 -6.6677 0.9009 31 1 0.5334 -7.0579 2.4404 32 1 1.1295 -8.7026 0.6836 33 1 2.5575 -7.7752 1.2013 34 1 0.8566 -7.1938 -1.2657 35 1 2.4643 -7.9585 -1.2696 36 1 3.0710 -4.3793 -2.1825 37 1 0.9888 -6.4753 -2.9496 38 1 0.6428 -4.7998 -2.4587 39 1 1.9633 -3.9624 -4.3826 40 1 0.6405 -5.0209 -4.9280 41 1 2.7583 -5.5675 -6.0971 42 1 2.2243 -6.9237 -5.0750 43 1 4.3060 -4.8275 -4.3072 44 1 4.6521 -6.5031 -4.7986 45 1 4.6543 -6.2821 -2.3287 46 1 3.3313 -7.3410 -2.8738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:39 Heat of formation + Delta-G solvation = -119.685804 kcal Electronic energy + Delta-G solvation = -21839.968919 eV Core-core repulsion = 18919.334278 eV Total energy + Delta-G solvation = -2920.634640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03161 -38.64267 -37.14670 -34.88179 -33.49002 -31.62375 -30.96191 -29.52541 -28.50222 -24.78173 -24.38487 -23.74532 -22.89715 -21.67515 -20.96200 -19.73117 -18.61968 -17.47270 -16.77661 -16.40181 -15.93030 -15.78670 -15.32689 -15.17003 -15.00995 -14.73912 -14.45527 -14.32856 -13.98461 -13.58120 -13.21762 -13.09900 -12.95465 -12.86249 -12.81290 -12.63176 -12.34301 -12.20700 -12.00730 -11.85348 -11.76623 -11.61406 -11.49791 -11.30563 -11.19444 -10.92777 -10.85817 -10.73194 -10.58427 -10.00545 -8.34615 -6.47346 1.35627 1.40708 1.49116 2.31582 2.98581 3.16110 3.66509 3.78357 3.84459 3.98890 4.07752 4.10105 4.26741 4.32064 4.35634 4.46554 4.49870 4.58951 4.60589 4.64180 4.69645 4.74094 4.77322 4.80404 4.86518 4.90803 5.01174 5.11626 5.13631 5.17110 5.17692 5.24501 5.27653 5.29172 5.31122 5.36175 5.40843 5.45745 5.50575 5.50933 5.55333 5.64460 5.72838 5.95705 6.55048 6.84938 7.25248 8.77571 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.006248 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.738641 B = 4480.184706 C = 5742.918796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.220 3.780 10 O -0.401 6.401 11 C 0.085 3.915 12 H 0.036 0.964 13 C -0.140 4.140 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.068 4.068 18 H 0.066 0.934 19 C -0.078 4.078 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.105 4.105 25 H 0.271 0.729 26 H -0.022 1.022 27 H -0.023 1.023 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -17.767 -5.692 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.145 3.855 10 O -0.321 6.321 11 C 0.027 3.973 12 H 0.054 0.946 13 C -0.178 4.178 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.087 4.087 18 H 0.084 0.916 19 C -0.097 4.097 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.143 4.143 25 H 0.080 0.920 26 H -0.004 1.004 27 H -0.005 1.005 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.055 -17.629 -5.691 18.963 hybrid contribution -0.358 1.620 0.339 1.694 sum 3.697 -16.009 -5.353 17.280 Atomic orbital electron populations 1.70071 1.07774 1.28676 1.50434 1.25958 0.95948 1.03346 0.93865 0.85275 0.78188 0.76820 0.79403 1.19044 1.19741 1.18944 1.21362 0.93963 0.90991 1.52320 0.92251 1.19672 0.88425 0.84825 0.92579 1.87818 1.35283 1.14250 1.94777 1.22248 0.95726 0.83960 0.95345 0.94552 1.22020 1.00855 0.97981 0.96896 1.21488 0.98761 0.93083 1.01496 1.21559 0.99867 0.98608 0.95198 1.21674 1.01174 0.94218 0.97468 1.21183 0.98281 0.94337 0.94874 0.91601 1.21028 0.96136 0.98781 0.93751 1.21616 0.96583 1.01398 0.95224 1.21551 0.99763 0.98864 0.95864 1.21484 0.94637 1.00005 0.98558 1.21563 0.97698 1.00861 0.95679 1.21580 0.98016 0.99372 0.95284 0.92040 1.00402 1.00494 0.91912 0.94609 0.92273 0.90595 0.89536 0.91656 0.91525 0.89118 0.94565 0.89683 0.95399 0.94616 0.91610 0.91503 0.90444 0.93952 0.90192 0.92312 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 45.71 29.54 68.60 2.03 47.73 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -34.03 9.43 25.60 0.24 -33.79 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.22 13.01 5.50 71.24 0.39 13.40 16 10 O -0.40 -20.64 9.20 -148.98 -1.37 -22.01 16 11 C 0.09 3.36 1.81 30.59 0.06 3.41 16 12 H 0.04 1.52 6.23 -2.39 -0.01 1.51 16 13 C -0.14 -4.89 5.54 30.59 0.17 -4.72 16 14 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 15 C -0.12 -2.33 5.92 30.59 0.18 -2.15 16 16 C -0.11 -2.38 4.46 30.59 0.14 -2.24 16 17 C -0.07 -2.09 1.70 -10.80 -0.02 -2.10 16 18 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 19 C -0.08 -2.42 1.89 -10.79 -0.02 -2.44 16 20 C -0.11 -3.28 4.46 30.60 0.14 -3.14 16 21 C -0.12 -3.34 5.92 30.59 0.18 -3.16 16 22 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 23 C -0.12 -2.63 5.93 30.61 0.18 -2.45 16 24 C -0.11 -2.43 4.97 30.61 0.15 -2.28 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H -0.02 -1.35 7.87 -2.39 -0.02 -1.37 16 27 H -0.02 -1.41 8.09 -2.39 -0.02 -1.43 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.41 7.87 -2.39 -0.02 1.39 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.47 6.34 -2.39 -0.02 1.46 16 35 H 0.09 1.57 6.58 -2.38 -0.02 1.56 16 36 H 0.04 1.46 7.52 -2.39 -0.02 1.44 16 37 H 0.08 2.04 6.34 -2.39 -0.02 2.02 16 38 H 0.03 1.00 6.58 -2.39 -0.02 0.99 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.08 1.55 6.58 -2.39 -0.02 1.53 16 Total: -1.00 -68.85 340.16 4.46 -64.39 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.91 Total: 12.78 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 2.61 Total: -45.51 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.38 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.37 Total: -22.01 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.85 4.46 -64.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.300 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds