Wall clock time and date at job start Mon Mar 30 2020 00:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48499 * 109.46973 * 270.00094 * 3 2 1 5 5 H 1.48491 * 109.47034 * 30.00241 * 3 2 1 6 6 H 1.48500 * 109.47012 * 150.00109 * 3 2 1 7 7 C 1.37873 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00070 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00173 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00207 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47269 * 149.99740 * 11 10 9 13 13 C 1.53002 * 109.46817 * 60.00152 * 12 11 10 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 11 15 15 C 1.53002 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46711 * 300.00001 * 15 14 13 17 17 C 1.53002 * 109.46711 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47233 * 59.99999 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.47415 * 179.97438 * 15 14 13 21 21 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 14 13 23 23 H 0.96993 * 119.99916 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46950 * 60.00164 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99707 * 9 7 2 26 26 H 1.09001 * 109.47098 * 29.99460 * 11 10 9 27 27 H 1.08993 * 109.47194 * 299.99633 * 12 11 10 28 28 H 1.09002 * 109.46695 * 179.97438 * 12 11 10 29 29 H 1.08992 * 109.47063 * 299.99823 * 13 12 11 30 30 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 32 32 H 1.09002 * 109.47075 * 59.99068 * 15 14 13 33 33 H 1.09002 * 109.46589 * 299.99365 * 16 15 14 34 34 H 1.08996 * 109.47165 * 59.99875 * 16 15 14 35 35 H 1.08992 * 109.47063 * 299.99627 * 17 16 15 36 36 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 39 39 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 40 40 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.47140 * 300.00024 * 20 15 14 42 42 H 1.09002 * 109.47045 * 59.99931 * 20 15 14 43 43 H 1.08996 * 109.47853 * 180.02562 * 21 14 13 44 44 H 1.09002 * 109.47153 * 300.00319 * 21 14 13 45 45 H 1.09000 * 109.47486 * 180.02562 * 22 21 14 46 46 H 1.09002 * 109.46716 * 60.00091 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 8 3.9881 -2.5412 -0.0022 11 6 5.4126 -2.6540 -0.0022 12 6 5.8224 -3.9401 0.7180 13 6 5.2154 -5.1446 -0.0043 14 6 5.7239 -5.1837 -1.4468 15 6 5.1174 -6.3886 -2.1689 16 6 5.5277 -7.6745 -1.4484 17 6 4.9207 -8.8793 -2.1701 18 6 5.4287 -8.9187 -3.6128 19 6 5.0183 -7.6329 -4.3332 20 6 5.6253 -6.4274 -3.6115 21 6 5.3141 -3.8976 -2.1670 22 6 5.9210 -2.6930 -1.4448 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8912 26 1 5.8450 -1.7958 0.5122 27 1 5.4602 -3.9122 1.7456 28 1 6.9090 -4.0263 0.7175 29 1 4.1289 -5.0586 -0.0042 30 1 5.5077 -6.0609 0.5086 31 1 6.8105 -5.2698 -1.4468 32 1 4.0307 -6.3031 -2.1687 33 1 6.6144 -7.7600 -1.4485 34 1 5.1655 -7.6466 -0.4207 35 1 3.8342 -8.7935 -2.1696 36 1 5.2134 -9.7954 -1.6570 37 1 4.9959 -9.7768 -4.1271 38 1 6.5153 -9.0045 -3.6132 39 1 3.9317 -7.5471 -4.3328 40 1 5.3797 -7.6610 -5.3611 41 1 5.3327 -5.5113 -4.1246 42 1 6.7120 -6.5128 -3.6119 43 1 5.6759 -3.9255 -3.1948 44 1 4.2275 -3.8116 -2.1670 45 1 5.6287 -1.7767 -1.9577 46 1 7.0076 -2.7791 -1.4449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:16 Heat of formation + Delta-G solvation = -100.527075 kcal Electronic energy + Delta-G solvation = -21318.387859 eV Core-core repulsion = 18398.584004 eV Total energy + Delta-G solvation = -2919.803855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67125 -37.89155 -35.38543 -32.68956 -31.65965 -31.17963 -30.09052 -28.27527 -27.27709 -23.27660 -23.05526 -21.96547 -21.43140 -20.55328 -19.70932 -19.06146 -16.81642 -15.98511 -15.27310 -15.15386 -14.66016 -14.39249 -14.18997 -14.08888 -13.72004 -13.25498 -13.11576 -12.84470 -12.55467 -12.37657 -12.23124 -11.98191 -11.83233 -11.48510 -11.39426 -11.11600 -11.00523 -10.93311 -10.82909 -10.64646 -10.48994 -10.33640 -10.12638 -10.07575 -9.81911 -9.58819 -9.45792 -9.11993 -8.76867 -8.37069 -6.10368 -4.08839 3.25062 3.32150 3.33830 4.36552 4.58028 4.66406 4.71398 4.78208 5.03994 5.08256 5.15410 5.21205 5.26202 5.33810 5.48435 5.49317 5.51392 5.55851 5.64523 5.65380 5.67806 5.81393 5.88112 5.90739 5.93225 5.96871 6.07964 6.11018 6.13534 6.17964 6.21825 6.24012 6.24832 6.41950 6.50169 6.51504 6.61684 6.64093 6.67862 6.73706 6.92261 7.05414 7.63228 8.09230 8.70975 9.01661 9.49680 11.02785 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.004190 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.353298 B = 6680.746645 C = 6960.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.082 0.918 9 C 0.169 3.831 10 O -0.368 6.368 11 C 0.084 3.916 12 C -0.112 4.112 13 C -0.110 4.110 14 C -0.076 4.076 15 C -0.082 4.082 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.138 4.138 23 H 0.266 0.734 24 H 0.000 1.000 25 H -0.004 1.004 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -14.206 -5.205 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.287 6.287 11 C 0.025 3.975 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.095 4.095 15 C -0.100 4.100 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.176 4.176 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.433 -14.240 -5.202 20.932 hybrid contribution 0.563 1.294 -0.036 1.412 sum 14.996 -12.946 -5.239 20.492 Atomic orbital electron populations 1.69874 1.06050 1.27024 1.50557 1.24760 0.94767 0.98696 0.94708 0.86873 0.80385 0.83897 0.78749 1.19968 1.20816 1.19130 1.20899 0.88363 0.95222 1.50933 0.90015 1.20607 0.96038 0.79978 0.94050 1.87946 1.17250 1.28902 1.94573 1.21906 0.84686 0.96697 0.94244 1.21579 0.99301 0.94659 0.99403 1.21524 1.02086 0.96660 0.94444 1.21136 0.99110 0.94108 0.95097 1.21184 1.00722 0.93956 0.94151 1.21634 1.00238 0.94088 0.99255 1.21544 1.00695 0.98023 0.95528 1.21525 1.00629 0.97481 0.95925 1.21553 1.00926 0.94826 0.98506 1.21641 0.99988 0.97921 0.95698 1.21498 1.02364 0.93197 0.97545 1.21994 0.99255 0.99009 0.97368 0.92417 0.98212 0.98609 0.93558 0.91719 0.91960 0.90612 0.92628 0.92176 0.90966 0.92424 0.91623 0.91993 0.92483 0.92551 0.92349 0.91985 0.92475 0.91589 0.92436 0.92717 0.90553 0.92051 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -15.39 9.99 -34.44 -0.34 -15.73 16 8 H 0.08 2.66 8.06 -52.48 -0.42 2.24 16 9 C 0.17 4.30 4.57 36.01 0.16 4.46 16 10 O -0.37 -8.42 8.62 -35.23 -0.30 -8.72 16 11 C 0.08 1.48 2.92 -26.73 -0.08 1.40 16 12 C -0.11 -1.65 5.66 -26.73 -0.15 -1.81 16 13 C -0.11 -1.55 4.71 -26.73 -0.13 -1.67 16 14 C -0.08 -0.97 1.77 -90.62 -0.16 -1.13 16 15 C -0.08 -0.95 1.77 -90.62 -0.16 -1.11 16 16 C -0.11 -1.18 4.85 -26.73 -0.13 -1.31 16 17 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 18 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 19 C -0.12 -1.16 5.92 -26.71 -0.16 -1.32 16 20 C -0.12 -1.22 4.86 -26.71 -0.13 -1.35 16 21 C -0.11 -1.61 4.71 -26.73 -0.13 -1.74 16 22 C -0.14 -2.16 5.63 -26.73 -0.15 -2.31 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 24 H 0.00 0.01 7.14 -51.93 -0.37 -0.37 16 25 H 0.00 -0.09 7.30 -51.93 -0.38 -0.47 16 26 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.28 7.68 -51.93 -0.40 0.88 16 30 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 44 H 0.08 1.36 7.68 -51.93 -0.40 0.96 16 45 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -30.43 338.86 -9.84 -40.27 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.78 Total: -2.47 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.96 Total: -24.07 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.03 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.30 Total: -8.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.43 -9.84 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.261 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds