Wall clock time and date at job start Mon Mar 30 2020 00:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48499 * 109.46973 * 270.00094 * 3 2 1 5 5 H 1.48491 * 109.47034 * 30.00241 * 3 2 1 6 6 H 1.48500 * 109.47012 * 150.00109 * 3 2 1 7 7 C 1.37873 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00070 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00173 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00207 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47269 * 149.99740 * 11 10 9 13 13 C 1.53002 * 109.46817 * 60.00152 * 12 11 10 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 11 15 15 C 1.53002 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46711 * 300.00001 * 15 14 13 17 17 C 1.53002 * 109.46711 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47233 * 59.99999 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.47415 * 179.97438 * 15 14 13 21 21 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 14 13 23 23 H 0.96993 * 119.99916 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46950 * 60.00164 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99707 * 9 7 2 26 26 H 1.09001 * 109.47098 * 29.99460 * 11 10 9 27 27 H 1.08993 * 109.47194 * 299.99633 * 12 11 10 28 28 H 1.09002 * 109.46695 * 179.97438 * 12 11 10 29 29 H 1.08992 * 109.47063 * 299.99823 * 13 12 11 30 30 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 32 32 H 1.09002 * 109.47075 * 59.99068 * 15 14 13 33 33 H 1.09002 * 109.46589 * 299.99365 * 16 15 14 34 34 H 1.08996 * 109.47165 * 59.99875 * 16 15 14 35 35 H 1.08992 * 109.47063 * 299.99627 * 17 16 15 36 36 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 39 39 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 40 40 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.47140 * 300.00024 * 20 15 14 42 42 H 1.09002 * 109.47045 * 59.99931 * 20 15 14 43 43 H 1.08996 * 109.47853 * 180.02562 * 21 14 13 44 44 H 1.09002 * 109.47153 * 300.00319 * 21 14 13 45 45 H 1.09000 * 109.47486 * 180.02562 * 22 21 14 46 46 H 1.09002 * 109.46716 * 60.00091 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 8 3.9881 -2.5412 -0.0022 11 6 5.4126 -2.6540 -0.0022 12 6 5.8224 -3.9401 0.7180 13 6 5.2154 -5.1446 -0.0043 14 6 5.7239 -5.1837 -1.4468 15 6 5.1174 -6.3886 -2.1689 16 6 5.5277 -7.6745 -1.4484 17 6 4.9207 -8.8793 -2.1701 18 6 5.4287 -8.9187 -3.6128 19 6 5.0183 -7.6329 -4.3332 20 6 5.6253 -6.4274 -3.6115 21 6 5.3141 -3.8976 -2.1670 22 6 5.9210 -2.6930 -1.4448 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8912 26 1 5.8450 -1.7958 0.5122 27 1 5.4602 -3.9122 1.7456 28 1 6.9090 -4.0263 0.7175 29 1 4.1289 -5.0586 -0.0042 30 1 5.5077 -6.0609 0.5086 31 1 6.8105 -5.2698 -1.4468 32 1 4.0307 -6.3031 -2.1687 33 1 6.6144 -7.7600 -1.4485 34 1 5.1655 -7.6466 -0.4207 35 1 3.8342 -8.7935 -2.1696 36 1 5.2134 -9.7954 -1.6570 37 1 4.9959 -9.7768 -4.1271 38 1 6.5153 -9.0045 -3.6132 39 1 3.9317 -7.5471 -4.3328 40 1 5.3797 -7.6610 -5.3611 41 1 5.3327 -5.5113 -4.1246 42 1 6.7120 -6.5128 -3.6119 43 1 5.6759 -3.9255 -3.1948 44 1 4.2275 -3.8116 -2.1670 45 1 5.6287 -1.7767 -1.9577 46 1 7.0076 -2.7791 -1.4449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:16 Heat of formation + Delta-G solvation = -116.559230 kcal Electronic energy + Delta-G solvation = -21319.083065 eV Core-core repulsion = 18398.584004 eV Total energy + Delta-G solvation = -2920.499062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78085 -39.12403 -36.80480 -34.83432 -32.87858 -32.15826 -31.11485 -30.10489 -28.65593 -24.38286 -24.12449 -23.91509 -22.48183 -21.59754 -20.63859 -20.30484 -18.99992 -17.37347 -16.74102 -16.47702 -16.26228 -15.74646 -15.24304 -15.02190 -14.82710 -14.74676 -14.53363 -14.10746 -13.98748 -13.68138 -13.34748 -13.33234 -13.02872 -12.76513 -12.70382 -12.52061 -12.44259 -11.98115 -11.94552 -11.91039 -11.83088 -11.53290 -11.47221 -11.27129 -11.12016 -11.08892 -10.93382 -10.61768 -10.53254 -10.09205 -8.39365 -6.46816 1.29966 1.33089 1.44070 2.26902 2.93202 3.13661 3.71296 3.74843 3.86807 3.97341 4.06700 4.11409 4.27774 4.31580 4.47003 4.51622 4.55195 4.57415 4.61644 4.63160 4.69013 4.71927 4.77313 4.81132 4.87409 4.93072 4.97454 5.01721 5.06872 5.09102 5.23284 5.25475 5.31326 5.31561 5.35637 5.39388 5.42268 5.45738 5.49192 5.50167 5.61518 5.63484 5.78445 5.97432 6.57396 6.81714 7.18360 8.78019 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.004190 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.353298 B = 6680.746645 C = 6960.766228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.543 4.543 8 H 0.028 0.972 9 C 0.182 3.818 10 O -0.393 6.393 11 C 0.068 3.932 12 C -0.109 4.109 13 C -0.108 4.108 14 C -0.068 4.068 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.136 4.136 23 H 0.273 0.727 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.045 0.955 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.455 -14.091 -5.555 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.581 4.581 8 H 0.046 0.954 9 C 0.106 3.894 10 O -0.312 6.312 11 C 0.010 3.990 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.086 4.086 15 C -0.098 4.098 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.173 4.173 23 H 0.082 0.918 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.167 -14.150 -5.552 23.687 hybrid contribution -0.677 1.149 0.074 1.335 sum 17.490 -13.002 -5.478 22.471 Atomic orbital electron populations 1.70032 1.08233 1.28747 1.51194 1.25825 0.95774 1.03332 0.93473 0.85632 0.79440 0.77652 0.79784 1.18412 1.19637 1.17063 1.21164 0.91050 0.93702 1.52166 0.95391 1.20265 0.93120 0.81576 0.94394 1.87926 1.21114 1.27343 1.94846 1.22359 0.81705 0.98577 0.96352 1.21625 1.01471 0.93074 0.98432 1.21496 0.99458 0.97641 0.95903 1.21097 1.00423 0.93322 0.93795 1.21130 0.98876 0.94500 0.95329 1.21602 1.01126 0.93405 0.98715 1.21554 0.99871 0.98244 0.96227 1.21512 1.01306 0.97165 0.95235 1.21562 1.00056 0.95041 0.99268 1.21611 1.00826 0.97902 0.94611 1.21465 0.99525 0.94380 0.99031 1.21996 1.01348 0.98449 0.95542 0.91803 0.97584 0.97737 0.92981 0.92572 0.88142 0.94874 0.90332 0.89507 0.94049 0.90839 0.92231 0.93394 0.91134 0.91715 0.91200 0.93441 0.91305 0.92643 0.90871 0.90918 0.95066 0.93588 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.54 -33.98 9.99 25.60 0.26 -33.72 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C 0.18 9.45 4.57 71.24 0.33 9.77 16 10 O -0.39 -18.63 8.62 -148.98 -1.28 -19.91 16 11 C 0.07 2.34 2.92 30.60 0.09 2.43 16 12 C -0.11 -3.02 5.66 30.59 0.17 -2.85 16 13 C -0.11 -2.98 4.71 30.60 0.14 -2.84 16 14 C -0.07 -1.64 1.77 -10.79 -0.02 -1.66 16 15 C -0.08 -1.81 1.77 -10.79 -0.02 -1.83 16 16 C -0.11 -2.09 4.85 30.60 0.15 -1.94 16 17 C -0.12 -2.12 5.92 30.60 0.18 -1.94 16 18 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 19 C -0.12 -2.20 5.92 30.61 0.18 -2.02 16 20 C -0.11 -2.20 4.86 30.61 0.15 -2.05 16 21 C -0.11 -3.12 4.71 30.59 0.14 -2.98 16 22 C -0.14 -4.01 5.63 30.60 0.17 -3.84 16 23 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.01 0.33 7.14 -2.39 -0.02 0.31 16 25 H 0.00 0.24 7.30 -2.39 -0.02 0.23 16 26 H 0.05 1.73 7.79 -2.39 -0.02 1.71 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.03 1.19 7.68 -2.39 -0.02 1.17 16 30 H 0.08 1.80 6.43 -2.39 -0.02 1.79 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.18 6.43 -2.39 -0.02 1.17 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.19 6.43 -2.39 -0.02 1.18 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.84 6.43 -2.39 -0.02 1.83 16 44 H 0.03 1.18 7.68 -2.39 -0.02 1.16 16 45 H 0.05 1.49 7.87 -2.39 -0.02 1.47 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.95 338.86 4.32 -65.63 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.85 Total: 13.95 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 2.57 Total: -45.79 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.28 Total: -19.91 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -69.95 4.32 -65.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.928 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds