Wall clock time and date at job start Mon Mar 30 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46752 * 179.97438 * 11 10 9 13 13 C 1.42898 * 113.99824 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47215 * 29.99902 * 13 12 11 15 15 C 1.53002 * 109.47162 * 270.00138 * 13 12 11 16 16 C 1.52999 * 109.47464 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.46871 * 59.99779 * 16 15 13 18 18 H 1.09004 * 109.47184 * 60.00151 * 17 16 15 19 19 C 1.52999 * 109.46871 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47146 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46969 * 300.00340 * 20 19 17 22 22 C 1.52999 * 109.47464 * 59.99855 * 21 20 19 23 23 C 1.52999 * 109.47411 * 300.00012 * 17 16 15 24 24 H 1.08992 * 109.47458 * 300.00341 * 23 17 16 25 25 C 1.52992 * 109.47471 * 150.00327 * 13 12 11 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 28 28 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 29 29 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 31 31 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 32 32 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 33 33 H 1.09001 * 109.47437 * 300.00450 * 15 13 12 34 34 H 1.09011 * 109.47211 * 60.00052 * 15 13 12 35 35 H 1.09000 * 109.46886 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46608 * 299.99895 * 16 15 13 37 37 H 1.09003 * 109.47413 * 300.00014 * 19 17 16 38 38 H 1.08996 * 109.47276 * 60.00378 * 19 17 16 39 39 H 1.08995 * 109.47284 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.46875 * 59.99948 * 20 19 17 41 41 H 1.09004 * 109.46862 * 299.99840 * 21 20 19 42 42 H 1.08997 * 109.46936 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47591 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47189 * 59.99363 * 22 21 20 45 45 H 1.09003 * 109.47101 * 300.00145 * 25 13 12 46 46 H 1.09004 * 109.47248 * 59.99595 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4088 -6.0733 0.0049 13 6 1.7943 -7.3634 0.0060 14 1 0.8343 -7.3090 -0.5075 15 6 1.5755 -7.8229 1.4490 16 6 0.9169 -9.2039 1.4502 17 6 1.8246 -10.2023 0.7291 18 1 2.7846 -10.2571 1.2425 19 6 1.1663 -11.5834 0.7309 20 6 2.0743 -12.5821 0.0104 21 6 2.2931 -12.1233 -1.4327 22 6 2.9514 -10.7421 -1.4345 23 6 2.0433 -9.7429 -0.7138 24 1 1.0835 -9.6881 -1.2272 25 6 2.7024 -8.3616 -0.7148 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8539 -5.0438 0.8948 32 1 0.8532 -5.0459 -0.8851 33 1 2.5354 -7.8772 1.9625 34 1 0.9284 -7.1117 1.9626 35 1 0.7607 -9.5309 2.4782 36 1 -0.0431 -9.1490 0.9368 37 1 1.0108 -11.9105 1.7590 38 1 0.2062 -11.5290 0.2178 39 1 1.6051 -13.5660 0.0113 40 1 3.0342 -12.6365 0.5238 41 1 1.3331 -12.0689 -1.9462 42 1 2.9403 -12.8345 -1.9459 43 1 3.1069 -10.4150 -2.4625 44 1 3.9113 -10.7965 -0.9210 45 1 2.8584 -8.0343 -1.7427 46 1 3.6624 -8.4160 -0.2013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:52 Heat of formation + Delta-G solvation = -110.326793 kcal Electronic energy + Delta-G solvation = -20444.585617 eV Core-core repulsion = 17524.356814 eV Total energy + Delta-G solvation = -2920.228803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11642 -37.72031 -34.92994 -33.65204 -32.50099 -31.42845 -29.61898 -28.46449 -26.42901 -23.49347 -23.04345 -22.11003 -21.87319 -20.35649 -19.99106 -19.66821 -16.56890 -15.99974 -15.49034 -15.33818 -15.05105 -14.57625 -14.48146 -14.36323 -13.93296 -13.54711 -13.32666 -12.95654 -12.48825 -12.26246 -12.14507 -12.04254 -11.63714 -11.55071 -11.52551 -11.24818 -11.04036 -10.97807 -10.85911 -10.70610 -10.55983 -10.54429 -10.28736 -10.05432 -10.01809 -9.73988 -9.39161 -9.07454 -9.02368 -8.33700 -5.98992 -4.01056 3.33778 3.39540 3.43699 3.91448 4.39708 4.43556 4.48147 4.56039 4.78848 4.83000 4.99711 5.08710 5.19080 5.22735 5.24184 5.29679 5.36955 5.39506 5.42272 5.50416 5.52273 5.63749 5.76310 5.77028 5.81517 5.82315 5.86861 5.91790 5.94097 5.99449 6.05328 6.10251 6.17889 6.22691 6.27146 6.31731 6.42154 6.73423 6.79036 7.13199 7.65830 7.72141 7.81554 8.00907 8.44172 9.05697 9.62858 11.12630 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.052646 B = 0.002776 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.726556 B =10083.115831 C =10325.088510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.063 3.937 12 O -0.386 6.386 13 C 0.090 3.910 14 H 0.055 0.945 15 C -0.141 4.141 16 C -0.111 4.111 17 C -0.083 4.083 18 H 0.070 0.930 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.078 4.078 24 H 0.070 0.930 25 C -0.110 4.110 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -25.818 -0.067 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.305 6.305 13 C 0.032 3.968 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.149 4.149 17 C -0.101 4.101 18 H 0.089 0.911 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.096 4.096 24 H 0.088 0.912 25 C -0.148 4.148 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.475 -25.666 -0.062 25.785 hybrid contribution 0.053 0.978 0.038 0.980 sum 2.527 -24.688 -0.024 24.817 Atomic orbital electron populations 1.69965 1.06075 1.26620 1.50985 1.25031 0.94871 0.99309 0.95332 0.86565 0.79848 0.83324 0.78113 1.20640 1.21225 1.19827 1.21232 0.93134 0.90881 1.50433 0.92539 1.19047 0.93931 0.91114 0.97278 1.21646 0.99609 0.91840 1.01413 1.22798 0.92170 0.87080 0.99237 1.87921 1.34353 1.13284 1.94987 1.21987 0.95892 0.84119 0.94828 0.92693 1.22039 1.01565 0.96502 0.97813 1.21542 0.98637 0.94387 1.00343 1.21200 0.99223 0.94057 0.95627 0.91108 1.21590 0.98780 0.94589 1.00250 1.21534 0.99938 0.98297 0.95933 1.21533 1.00776 0.96692 0.96682 1.21579 0.98732 0.94410 1.00417 1.21133 0.99101 0.93779 0.95630 0.91190 1.21632 0.99196 0.93049 1.00915 0.93000 0.96526 0.96524 0.92662 0.92660 0.93995 0.93999 0.91277 0.91693 0.91834 0.92016 0.92109 0.92028 0.92290 0.92083 0.92072 0.92211 0.91899 0.91907 0.91382 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.38 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.19 5.75 37.16 0.21 1.40 16 12 O -0.39 -6.76 9.99 -35.23 -0.35 -7.12 16 13 C 0.09 1.22 2.61 -26.73 -0.07 1.15 16 14 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 15 C -0.14 -1.71 5.54 -26.73 -0.15 -1.86 16 16 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 17 C -0.08 -0.73 1.99 -90.62 -0.18 -0.91 16 18 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 19 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 20 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 22 C -0.11 -0.93 5.21 -26.70 -0.14 -1.07 16 23 C -0.08 -0.72 2.00 -90.57 -0.18 -0.90 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 C -0.11 -1.27 4.86 -26.71 -0.13 -1.40 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.76 7.87 -51.93 -0.41 0.36 16 32 H 0.04 0.76 8.08 -51.93 -0.42 0.35 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.84 7.87 -51.92 -0.41 0.43 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -30.19 351.76 -10.48 -40.66 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -9.22 Total: -5.53 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.93 Total: -23.70 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.35 Total: -7.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.19 -10.48 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.664 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds