Wall clock time and date at job start Mon Mar 30 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46752 * 179.97438 * 11 10 9 13 13 C 1.42898 * 113.99824 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47215 * 29.99902 * 13 12 11 15 15 C 1.53002 * 109.47162 * 270.00138 * 13 12 11 16 16 C 1.52999 * 109.47464 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.46871 * 59.99779 * 16 15 13 18 18 H 1.09004 * 109.47184 * 60.00151 * 17 16 15 19 19 C 1.52999 * 109.46871 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47146 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46969 * 300.00340 * 20 19 17 22 22 C 1.52999 * 109.47464 * 59.99855 * 21 20 19 23 23 C 1.52999 * 109.47411 * 300.00012 * 17 16 15 24 24 H 1.08992 * 109.47458 * 300.00341 * 23 17 16 25 25 C 1.52992 * 109.47471 * 150.00327 * 13 12 11 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 28 28 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 29 29 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 31 31 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 32 32 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 33 33 H 1.09001 * 109.47437 * 300.00450 * 15 13 12 34 34 H 1.09011 * 109.47211 * 60.00052 * 15 13 12 35 35 H 1.09000 * 109.46886 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46608 * 299.99895 * 16 15 13 37 37 H 1.09003 * 109.47413 * 300.00014 * 19 17 16 38 38 H 1.08996 * 109.47276 * 60.00378 * 19 17 16 39 39 H 1.08995 * 109.47284 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.46875 * 59.99948 * 20 19 17 41 41 H 1.09004 * 109.46862 * 299.99840 * 21 20 19 42 42 H 1.08997 * 109.46936 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47591 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47189 * 59.99363 * 22 21 20 45 45 H 1.09003 * 109.47101 * 300.00145 * 25 13 12 46 46 H 1.09004 * 109.47248 * 59.99595 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4088 -6.0733 0.0049 13 6 1.7943 -7.3634 0.0060 14 1 0.8343 -7.3090 -0.5075 15 6 1.5755 -7.8229 1.4490 16 6 0.9169 -9.2039 1.4502 17 6 1.8246 -10.2023 0.7291 18 1 2.7846 -10.2571 1.2425 19 6 1.1663 -11.5834 0.7309 20 6 2.0743 -12.5821 0.0104 21 6 2.2931 -12.1233 -1.4327 22 6 2.9514 -10.7421 -1.4345 23 6 2.0433 -9.7429 -0.7138 24 1 1.0835 -9.6881 -1.2272 25 6 2.7024 -8.3616 -0.7148 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8927 30 1 2.8719 -3.6052 -0.8873 31 1 0.8539 -5.0438 0.8948 32 1 0.8532 -5.0459 -0.8851 33 1 2.5354 -7.8772 1.9625 34 1 0.9284 -7.1117 1.9626 35 1 0.7607 -9.5309 2.4782 36 1 -0.0431 -9.1490 0.9368 37 1 1.0108 -11.9105 1.7590 38 1 0.2062 -11.5290 0.2178 39 1 1.6051 -13.5660 0.0113 40 1 3.0342 -12.6365 0.5238 41 1 1.3331 -12.0689 -1.9462 42 1 2.9403 -12.8345 -1.9459 43 1 3.1069 -10.4150 -2.4625 44 1 3.9113 -10.7965 -0.9210 45 1 2.8584 -8.0343 -1.7427 46 1 3.6624 -8.4160 -0.2013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:52 Heat of formation + Delta-G solvation = -124.578150 kcal Electronic energy + Delta-G solvation = -20445.203602 eV Core-core repulsion = 17524.356814 eV Total energy + Delta-G solvation = -2920.846788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95930 -38.91386 -36.22739 -35.31754 -33.56374 -33.07900 -30.48481 -29.44742 -28.24548 -24.91616 -24.27300 -23.01513 -22.63782 -22.08195 -20.80549 -20.57249 -18.58863 -17.47226 -16.79458 -16.47350 -16.24763 -16.00358 -15.49500 -15.19676 -14.73711 -14.67271 -14.52860 -14.16436 -13.97979 -13.74596 -13.37624 -13.13910 -12.87807 -12.77723 -12.52784 -12.39815 -12.30560 -12.21445 -12.14170 -11.81664 -11.74399 -11.62404 -11.52756 -11.43857 -11.27311 -11.22311 -10.80889 -10.73575 -10.57707 -10.27785 -8.22573 -6.33856 1.39669 1.41401 1.52823 2.39067 2.69677 3.10658 3.65231 3.67930 3.82554 3.99435 4.03213 4.13832 4.17834 4.28298 4.33669 4.36978 4.45865 4.52152 4.55863 4.58559 4.61884 4.66349 4.73518 4.79444 4.88591 4.90174 4.94670 5.05741 5.09633 5.12488 5.14674 5.17689 5.23370 5.25122 5.34450 5.37568 5.42931 5.45047 5.47704 5.53172 5.67588 5.68421 5.80602 6.18880 6.37715 6.81706 7.35343 8.89629 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.052646 B = 0.002776 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.726556 B =10083.115831 C =10325.088510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.096 4.096 11 C 0.075 3.925 12 O -0.401 6.401 13 C 0.081 3.919 14 H 0.057 0.943 15 C -0.139 4.139 16 C -0.106 4.106 17 C -0.080 4.080 18 H 0.067 0.933 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.073 4.073 24 H 0.069 0.931 25 C -0.106 4.106 26 H 0.265 0.735 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -26.917 -0.057 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.134 4.134 11 C -0.001 4.001 12 O -0.321 6.321 13 C 0.024 3.976 14 H 0.075 0.925 15 C -0.177 4.177 16 C -0.144 4.144 17 C -0.098 4.098 18 H 0.086 0.914 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.091 4.091 24 H 0.088 0.912 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.097 -26.789 -0.053 26.967 hybrid contribution -0.152 1.285 0.033 1.295 sum 2.944 -25.504 -0.021 25.673 Atomic orbital electron populations 1.70088 1.07775 1.27933 1.51489 1.25997 0.95839 1.03425 0.94552 0.85404 0.78609 0.78185 0.78602 1.19614 1.20477 1.18844 1.21652 0.93561 0.92262 1.50893 0.92280 1.18919 0.94205 0.92534 0.95230 1.21395 0.98592 0.92224 1.01160 1.22476 0.91707 0.86297 0.99624 1.87877 1.34637 1.14414 1.95190 1.22288 0.96351 0.82704 0.96241 0.92517 1.22007 1.01358 0.97849 0.96450 1.21522 0.98610 0.92936 1.01324 1.21173 0.99028 0.94691 0.94923 0.91410 1.21564 0.98765 0.93689 1.00882 1.21536 0.99905 0.98591 0.95571 1.21527 1.00877 0.96055 0.97047 1.21563 0.98494 0.94753 1.00177 1.21101 0.99083 0.92612 0.96327 0.91215 1.21622 0.98769 0.93808 1.00131 0.92616 0.98531 0.98550 0.92879 0.92802 0.93656 0.93602 0.91763 0.92791 0.90668 0.91731 0.91389 0.91912 0.91234 0.92067 0.91994 0.91327 0.91913 0.91977 0.91905 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.55 4.97 29.85 0.15 1.69 16 10 C -0.10 -4.31 5.52 30.60 0.17 -4.14 16 11 C 0.08 2.85 5.75 71.98 0.41 3.27 16 12 O -0.40 -14.05 9.99 -148.98 -1.49 -15.54 16 13 C 0.08 2.19 2.61 30.59 0.08 2.27 16 14 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 15 C -0.14 -3.30 5.54 30.59 0.17 -3.13 16 16 C -0.11 -1.90 5.20 30.59 0.16 -1.74 16 17 C -0.08 -1.27 1.99 -10.80 -0.02 -1.29 16 18 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 19 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 20 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 21 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 22 C -0.11 -1.65 5.21 30.61 0.16 -1.49 16 23 C -0.07 -1.25 2.00 -10.76 -0.02 -1.28 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 C -0.11 -2.37 4.86 30.61 0.15 -2.23 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.36 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.67 7.87 -2.39 -0.02 1.65 16 32 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.38 7.87 -2.38 -0.02 1.37 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.10 351.76 4.33 -59.77 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.88 Total: 9.11 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 2.62 Total: -43.17 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.49 Total: -15.54 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.10 4.33 -59.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.808 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds