Wall clock time and date at job start Mon Mar 30 2020 00:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48498 * 109.47216 * 240.00079 * 3 2 1 5 5 H 1.48508 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47143 * 119.99626 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.52997 * 109.47319 * 270.00076 * 13 12 11 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47106 * 60.00162 * 16 15 13 18 18 H 1.08996 * 109.47407 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47346 * 59.99981 * 17 16 15 20 20 C 1.53002 * 109.47343 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47143 * 60.00066 * 20 19 17 22 22 C 1.53006 * 109.47127 * 299.99835 * 21 20 19 23 23 C 1.52999 * 109.46623 * 60.00064 * 22 21 20 24 24 H 1.09002 * 109.46716 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47269 * 60.00164 * 23 22 21 26 26 H 0.97005 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 28 28 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 29 29 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 30 30 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 31 31 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 32 32 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 33 33 H 1.09002 * 109.47153 * 300.00307 * 15 13 12 34 34 H 1.08998 * 109.47533 * 59.99936 * 15 13 12 35 35 H 1.09002 * 109.47103 * 300.00247 * 16 15 13 36 36 H 1.08996 * 109.47747 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47108 * 300.00289 * 19 17 16 38 38 H 1.09000 * 109.46870 * 60.00183 * 19 17 16 39 39 H 1.09002 * 109.47067 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.46930 * 300.00001 * 20 19 17 41 41 H 1.08996 * 109.46952 * 60.00137 * 21 20 19 42 42 H 1.09001 * 109.46832 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.46884 * 300.00752 * 22 21 20 44 44 H 1.08996 * 109.47129 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47140 * 59.99453 * 25 23 22 46 46 H 1.09002 * 109.47497 * 299.99829 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 8 2.4088 -6.0733 0.0024 13 6 1.7942 -7.3634 0.0035 14 1 0.8343 -7.3090 -0.5101 15 6 1.5753 -7.8228 1.4463 16 6 0.9179 -9.2043 1.4475 17 6 1.8266 -10.2022 0.7268 18 1 1.3581 -11.1863 0.7273 19 6 3.1739 -10.2780 1.4478 20 6 4.0829 -11.2754 0.7267 21 6 4.3016 -10.8154 -0.7160 22 6 2.9543 -10.7397 -1.4370 23 6 2.0454 -9.7423 -0.7159 24 1 1.0857 -9.6880 -1.2298 25 6 2.7026 -8.3606 -0.7166 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6246 -2.5563 0.8919 29 1 2.8725 -3.6040 0.8910 30 1 2.8712 -3.6047 -0.8890 31 1 0.8531 -5.0450 -0.8877 32 1 0.8539 -5.0447 0.8922 33 1 2.5353 -7.8772 1.9599 34 1 0.9284 -7.1118 1.9600 35 1 -0.0420 -9.1503 0.9339 36 1 0.7624 -9.5319 2.4754 37 1 3.6423 -9.2937 1.4470 38 1 3.0180 -10.6053 2.4757 39 1 5.0426 -11.3297 1.2407 40 1 3.6146 -12.2598 0.7272 41 1 4.7698 -9.8311 -0.7164 42 1 4.9488 -11.5263 -1.2297 43 1 2.4861 -11.7240 -1.4364 44 1 3.1101 -10.4116 -2.4647 45 1 2.8585 -8.0329 -1.7444 46 1 3.6625 -8.4145 -0.2030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:54 Heat of formation + Delta-G solvation = -103.524707 kcal Electronic energy + Delta-G solvation = -20773.694053 eV Core-core repulsion = 17853.760210 eV Total energy + Delta-G solvation = -2919.933842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51074 -37.60738 -34.66191 -33.65661 -32.24892 -31.40796 -29.46237 -28.61092 -26.45443 -23.91184 -23.00967 -22.35842 -21.87305 -20.76910 -20.13118 -18.07696 -16.54085 -16.05752 -15.73296 -15.56364 -15.26243 -14.53148 -14.42027 -14.20271 -13.88663 -13.48734 -13.21584 -12.70718 -12.60894 -12.27296 -12.26117 -12.04326 -11.91258 -11.66733 -11.35796 -11.28096 -10.98312 -10.84043 -10.80071 -10.64836 -10.47031 -10.40037 -10.18177 -10.05294 -9.90895 -9.73166 -9.39205 -9.08552 -9.01595 -8.33272 -5.98736 -4.00916 3.35509 3.39159 3.42262 3.93382 4.43221 4.47377 4.48359 4.59334 4.84831 4.92556 5.01834 5.09036 5.20927 5.24730 5.27085 5.35453 5.37096 5.41584 5.46404 5.49233 5.54549 5.65744 5.77210 5.79010 5.83889 5.86522 5.91340 5.94979 5.98880 6.01383 6.05984 6.14918 6.23637 6.25601 6.27836 6.36530 6.46999 6.73570 6.79328 7.13336 7.65946 7.72570 7.81687 8.01034 8.44317 9.05602 9.62940 11.12823 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.003021 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.904555 B = 9266.338900 C = 9462.123386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.063 3.937 12 O -0.386 6.386 13 C 0.090 3.910 14 H 0.054 0.946 15 C -0.143 4.143 16 C -0.112 4.112 17 C -0.081 4.081 18 H 0.067 0.933 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.079 4.079 24 H 0.069 0.931 25 C -0.113 4.113 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -24.716 0.508 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.305 6.305 13 C 0.032 3.968 14 H 0.072 0.928 15 C -0.181 4.181 16 C -0.150 4.150 17 C -0.100 4.100 18 H 0.086 0.914 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.150 4.150 23 C -0.098 4.098 24 H 0.087 0.913 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.096 -24.562 0.507 24.907 hybrid contribution 0.028 0.951 0.036 0.952 sum 4.124 -23.612 0.543 23.975 Atomic orbital electron populations 1.69958 1.06073 1.26726 1.50877 1.25027 0.94871 0.99291 0.95311 0.86627 0.79553 0.82975 0.78671 1.20201 1.21291 1.20198 1.21196 0.93103 0.90904 1.50595 0.92586 1.19039 0.93920 0.91093 0.97264 1.21645 0.99612 0.91858 1.01398 1.22791 0.92169 0.87083 0.99220 1.87918 1.34345 1.13287 1.94990 1.21971 0.95888 0.84111 0.94833 0.92786 1.22074 1.01706 0.96436 0.97871 1.21525 0.98393 0.94680 1.00387 1.21134 0.95769 0.98490 0.94570 0.91416 1.21700 0.95393 1.00197 0.98459 1.21518 0.99419 0.98808 0.95793 1.21589 0.97176 1.01710 0.95610 1.21531 0.95666 0.98892 0.98887 1.21085 0.98773 0.94345 0.95582 0.91267 1.21695 0.99598 0.92890 1.00860 0.92943 0.96542 0.96538 0.92671 0.92673 0.94013 0.94024 0.90966 0.91822 0.92010 0.91838 0.90914 0.92283 0.92268 0.92375 0.91412 0.92383 0.92100 0.91950 0.91563 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.38 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.19 5.75 37.16 0.21 1.40 16 12 O -0.39 -6.73 9.99 -35.23 -0.35 -7.08 16 13 C 0.09 1.22 2.61 -26.78 -0.07 1.15 16 14 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 15 C -0.14 -1.73 5.26 -26.74 -0.14 -1.87 16 16 C -0.11 -1.08 5.45 -26.73 -0.15 -1.22 16 17 C -0.08 -0.71 2.47 -90.62 -0.22 -0.94 16 18 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 19 C -0.12 -1.04 4.59 -26.73 -0.12 -1.17 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 22 C -0.11 -0.91 5.45 -26.73 -0.15 -1.06 16 23 C -0.08 -0.74 2.46 -90.62 -0.22 -0.96 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.11 -1.30 4.23 -26.78 -0.11 -1.41 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 33 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16 34 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.73 4.81 -51.93 -0.25 0.48 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.90 4.81 -51.93 -0.25 0.65 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -30.13 341.30 -10.16 -40.30 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -8.69 Total: -4.53 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -1.98 Total: -24.20 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.35 Total: -7.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.13 -10.16 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.229 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds