Wall clock time and date at job start Mon Mar 30 2020 00:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48498 * 109.47216 * 240.00079 * 3 2 1 5 5 H 1.48508 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47143 * 119.99626 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.52997 * 109.47319 * 270.00076 * 13 12 11 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47106 * 60.00162 * 16 15 13 18 18 H 1.08996 * 109.47407 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47346 * 59.99981 * 17 16 15 20 20 C 1.53002 * 109.47343 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47143 * 60.00066 * 20 19 17 22 22 C 1.53006 * 109.47127 * 299.99835 * 21 20 19 23 23 C 1.52999 * 109.46623 * 60.00064 * 22 21 20 24 24 H 1.09002 * 109.46716 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47269 * 60.00164 * 23 22 21 26 26 H 0.97005 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 28 28 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 29 29 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 30 30 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 31 31 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 32 32 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 33 33 H 1.09002 * 109.47153 * 300.00307 * 15 13 12 34 34 H 1.08998 * 109.47533 * 59.99936 * 15 13 12 35 35 H 1.09002 * 109.47103 * 300.00247 * 16 15 13 36 36 H 1.08996 * 109.47747 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47108 * 300.00289 * 19 17 16 38 38 H 1.09000 * 109.46870 * 60.00183 * 19 17 16 39 39 H 1.09002 * 109.47067 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.46930 * 300.00001 * 20 19 17 41 41 H 1.08996 * 109.46952 * 60.00137 * 21 20 19 42 42 H 1.09001 * 109.46832 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.46884 * 300.00752 * 22 21 20 44 44 H 1.08996 * 109.47129 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47140 * 59.99453 * 25 23 22 46 46 H 1.09002 * 109.47497 * 299.99829 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 8 2.4088 -6.0733 0.0024 13 6 1.7942 -7.3634 0.0035 14 1 0.8343 -7.3090 -0.5101 15 6 1.5753 -7.8228 1.4463 16 6 0.9179 -9.2043 1.4475 17 6 1.8266 -10.2022 0.7268 18 1 1.3581 -11.1863 0.7273 19 6 3.1739 -10.2780 1.4478 20 6 4.0829 -11.2754 0.7267 21 6 4.3016 -10.8154 -0.7160 22 6 2.9543 -10.7397 -1.4370 23 6 2.0454 -9.7423 -0.7159 24 1 1.0857 -9.6880 -1.2298 25 6 2.7026 -8.3606 -0.7166 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6246 -2.5563 0.8919 29 1 2.8725 -3.6040 0.8910 30 1 2.8712 -3.6047 -0.8890 31 1 0.8531 -5.0450 -0.8877 32 1 0.8539 -5.0447 0.8922 33 1 2.5353 -7.8772 1.9599 34 1 0.9284 -7.1118 1.9600 35 1 -0.0420 -9.1503 0.9339 36 1 0.7624 -9.5319 2.4754 37 1 3.6423 -9.2937 1.4470 38 1 3.0180 -10.6053 2.4757 39 1 5.0426 -11.3297 1.2407 40 1 3.6146 -12.2598 0.7272 41 1 4.7698 -9.8311 -0.7164 42 1 4.9488 -11.5263 -1.2297 43 1 2.4861 -11.7240 -1.4364 44 1 3.1101 -10.4116 -2.4647 45 1 2.8585 -8.0329 -1.7444 46 1 3.6625 -8.4145 -0.2030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:54 Heat of formation + Delta-G solvation = -118.110567 kcal Electronic energy + Delta-G solvation = -20774.326543 eV Core-core repulsion = 17853.760210 eV Total energy + Delta-G solvation = -2920.566333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34301 -38.86456 -36.09129 -35.15854 -33.56865 -32.82019 -30.43952 -29.47279 -28.33653 -24.91006 -24.69228 -23.14309 -22.81155 -22.03009 -21.53690 -18.92151 -18.52913 -17.47079 -16.73861 -16.57541 -16.46758 -16.42145 -15.40384 -15.22633 -14.85717 -14.60851 -14.27285 -14.23683 -13.79275 -13.62373 -13.32376 -13.17921 -13.02049 -12.88388 -12.73895 -12.51943 -12.37113 -12.12325 -12.08418 -11.84928 -11.70563 -11.56578 -11.52197 -11.36197 -11.17211 -10.94884 -10.80333 -10.69889 -10.57256 -10.26757 -8.22410 -6.33887 1.39638 1.43215 1.51215 2.39190 2.71090 3.10715 3.67609 3.71066 3.82300 4.00977 4.10477 4.15918 4.18607 4.27607 4.28966 4.41270 4.48184 4.50521 4.56117 4.57349 4.63770 4.71593 4.72712 4.79683 4.86684 4.89860 4.96292 5.00936 5.11766 5.15652 5.18688 5.21332 5.23741 5.25733 5.29351 5.37813 5.47149 5.47870 5.53010 5.56317 5.67425 5.70039 5.80411 6.19012 6.38704 6.81464 7.35293 8.89556 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.003021 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.904555 B = 9266.338900 C = 9462.123386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.076 3.924 12 O -0.401 6.401 13 C 0.082 3.918 14 H 0.055 0.945 15 C -0.140 4.140 16 C -0.108 4.108 17 C -0.078 4.078 18 H 0.084 0.916 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.076 4.076 24 H 0.072 0.928 25 C -0.108 4.108 26 H 0.265 0.735 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -25.963 0.535 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.001 4.001 12 O -0.321 6.321 13 C 0.025 3.975 14 H 0.073 0.927 15 C -0.178 4.178 16 C -0.146 4.146 17 C -0.096 4.096 18 H 0.103 0.897 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.094 4.094 24 H 0.090 0.910 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.745 -25.832 0.535 26.269 hybrid contribution -0.182 1.301 0.030 1.313 sum 4.564 -24.531 0.564 24.958 Atomic orbital electron populations 1.70085 1.07779 1.27998 1.51380 1.25995 0.95837 1.03415 0.94509 0.85463 0.78278 0.77851 0.79242 1.19139 1.20554 1.19141 1.21629 0.93580 0.92282 1.51070 0.92254 1.18910 0.94189 0.92523 0.95199 1.21394 0.98594 0.92248 1.01138 1.22463 0.91704 0.86320 0.99566 1.87876 1.34623 1.14430 1.95191 1.22275 0.96311 0.82686 0.96273 0.92665 1.22035 1.01497 0.97794 0.96464 1.21518 0.98451 0.93186 1.01399 1.21134 0.95700 0.98887 0.93886 0.89736 1.21683 0.95411 0.99575 0.99045 1.21506 0.99457 0.98957 0.95363 1.21592 0.97268 1.01242 0.96052 1.21520 0.95439 0.99109 0.98628 1.21082 0.98930 0.93086 0.96349 0.90979 1.21676 0.99217 0.93728 0.99904 0.92608 0.98566 0.98579 0.92877 0.92836 0.93654 0.93721 0.91430 0.93066 0.91608 0.90684 0.92701 0.91639 0.92022 0.91231 0.92834 0.91371 0.90680 0.91998 0.92328 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.59 4.97 29.85 0.15 1.73 16 10 C -0.10 -4.33 5.52 30.59 0.17 -4.16 16 11 C 0.08 2.89 5.75 71.98 0.41 3.30 16 12 O -0.40 -14.09 9.99 -148.98 -1.49 -15.57 16 13 C 0.08 2.20 2.61 30.56 0.08 2.28 16 14 H 0.06 1.47 7.79 -2.39 -0.02 1.45 16 15 C -0.14 -3.32 5.26 30.59 0.16 -3.16 16 16 C -0.11 -1.90 5.45 30.59 0.17 -1.73 16 17 C -0.08 -1.20 2.47 -10.79 -0.03 -1.22 16 18 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 19 C -0.12 -1.88 4.59 30.59 0.14 -1.74 16 20 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 21 C -0.12 -1.78 5.65 30.60 0.17 -1.61 16 22 C -0.11 -1.55 5.45 30.60 0.17 -1.38 16 23 C -0.08 -1.28 2.46 -10.79 -0.03 -1.31 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 C -0.11 -2.43 4.23 30.56 0.13 -2.30 16 26 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 27 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 28 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 29 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 32 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 33 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 34 H 0.05 1.32 7.87 -2.39 -0.02 1.30 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.06 4.81 -2.38 -0.01 1.05 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.05 0.92 6.43 -2.39 -0.02 0.90 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.68 4.81 -2.39 -0.01 1.67 16 Total: -1.00 -64.28 341.30 4.30 -59.98 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.91 Total: 10.01 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 2.57 Total: -44.21 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.22 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.49 Total: -15.57 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.28 4.30 -59.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.128 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds