Wall clock time and date at job start Mon Mar 30 2020 00:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 110.44808 * 2 1 4 4 C 1.56524 * 111.30366 * 237.01511 * 2 1 3 5 5 H 1.09000 * 110.54458 * 122.72450 * 4 2 1 6 6 O 1.42903 * 110.08630 * 0.42585 * 4 2 1 7 7 C 1.42904 * 113.99645 * 94.74367 * 6 4 2 8 8 C 1.53001 * 109.46859 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47160 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47076 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00018 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99813 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46752 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46855 * 120.00108 * 14 12 10 17 17 H 1.48499 * 109.46996 * 240.00361 * 14 12 10 18 18 C 1.55926 * 104.82220 * 241.69136 * 4 2 1 19 19 C 1.53005 * 116.52683 * 199.33188 * 18 4 2 20 20 C 1.55923 * 104.49806 * 70.00797 * 18 4 2 21 21 C 1.54580 * 104.64370 * 289.72169 * 20 18 4 22 22 C 1.55926 * 104.64170 * 359.97438 * 21 20 18 23 23 H 1.09007 * 115.91651 * 199.96645 * 22 21 20 24 24 C 1.56945 * 100.65499 * 326.22250 * 22 21 20 25 25 H 1.09004 * 109.47349 * 289.59745 * 1 2 3 26 26 H 1.09002 * 109.46923 * 49.59316 * 1 2 3 27 27 H 1.08996 * 109.46953 * 169.59495 * 1 2 3 28 28 H 1.09007 * 109.46707 * 182.38805 * 3 2 1 29 29 H 1.08997 * 109.47548 * 302.38525 * 3 2 1 30 30 H 1.09003 * 109.47137 * 62.39207 * 3 2 1 31 31 H 1.08999 * 109.47321 * 299.99707 * 7 6 4 32 32 H 1.08999 * 109.46861 * 60.00286 * 7 6 4 33 33 H 1.09001 * 109.47204 * 300.00394 * 8 7 6 34 34 H 1.08995 * 109.47099 * 59.99956 * 8 7 6 35 35 H 1.08999 * 109.47083 * 299.99738 * 9 8 7 36 36 H 1.08999 * 109.46798 * 60.00132 * 9 8 7 37 37 H 0.96995 * 120.00137 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47287 * 297.98362 * 19 18 4 39 39 H 1.09002 * 109.47307 * 57.98980 * 19 18 4 40 40 H 1.09000 * 109.46779 * 177.98566 * 19 18 4 41 41 H 1.09003 * 110.40211 * 48.51089 * 20 18 4 42 42 H 1.08998 * 110.40649 * 170.92862 * 20 18 4 43 43 H 1.09000 * 110.40428 * 118.79228 * 21 20 18 44 44 H 1.09005 * 110.40273 * 241.20535 * 21 20 18 45 45 H 1.08998 * 112.02477 * 296.82942 * 24 22 21 46 46 H 1.08998 * 112.03003 * 170.30350 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0987 -0.7939 -1.2232 5 1 2.7517 -0.1585 -1.8215 6 8 1.0266 -1.2999 -2.0212 7 6 0.6710 -0.4568 -3.1189 8 6 -0.4811 -1.0936 -3.8987 9 6 -0.8614 -0.1913 -5.0743 10 6 -1.9958 -0.8189 -5.8427 11 1 -2.4048 -1.7663 -5.5241 12 6 -2.5121 -0.1830 -6.9518 13 7 -2.0144 0.9710 -7.3394 14 14 -3.9187 -0.9605 -7.9039 15 1 -4.2950 -2.2483 -7.2673 16 1 -5.0876 -0.0447 -7.8959 17 1 -3.4919 -1.2064 -9.3048 18 6 2.9096 -1.9680 -0.5946 19 6 3.9444 -2.6438 -1.4966 20 6 1.8260 -2.9054 0.0207 21 6 1.2723 -2.1204 1.2318 22 6 2.0740 -0.7830 1.2345 23 1 2.0862 -0.2368 2.1778 24 6 3.4648 -1.2773 0.7011 25 1 -0.3634 0.3447 0.9682 26 1 -0.3633 0.6662 -0.7825 27 1 -0.3633 -1.0107 -0.1856 28 1 3.1536 1.4153 -0.0428 29 1 1.6758 1.9664 -0.8678 30 1 1.7452 1.9405 0.9107 31 1 0.3597 0.5176 -2.7426 32 1 1.5315 -0.3344 -3.7766 33 1 -0.1702 -2.0683 -4.2749 34 1 -1.3414 -1.2157 -3.2407 35 1 -1.1722 0.7835 -4.6984 36 1 -0.0009 -0.0697 -5.7321 37 1 -2.3773 1.4182 -8.1198 38 1 3.4418 -3.0923 -2.3536 39 1 4.6632 -1.9017 -1.8443 40 1 4.4654 -3.4188 -0.9345 41 1 1.0335 -3.0963 -0.7029 42 1 2.2760 -3.8424 0.3487 43 1 0.2076 -1.9254 1.1036 44 1 1.4501 -2.6715 2.1553 45 1 3.9314 -1.9928 1.3782 46 1 4.1317 -0.4473 0.4680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:03 Heat of formation + Delta-G solvation = -71.383373 kcal Electronic energy + Delta-G solvation = -21613.532538 eV Core-core repulsion = 18694.992449 eV Total energy + Delta-G solvation = -2918.540089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00145 -36.81269 -33.78474 -33.69777 -31.53464 -30.80011 -28.62854 -27.06743 -26.70542 -25.58866 -24.17949 -22.78593 -21.18299 -20.14134 -19.04912 -18.10608 -16.47497 -16.10490 -15.69211 -15.50182 -14.79367 -14.42315 -13.98032 -13.66432 -13.49209 -13.07649 -12.75950 -12.58302 -12.35976 -12.20999 -12.19456 -11.87129 -11.63444 -11.49662 -11.40293 -11.11593 -10.96324 -10.92325 -10.65090 -10.58497 -10.52937 -10.44204 -10.36674 -9.93318 -9.74848 -9.71964 -9.39272 -9.05906 -8.89970 -8.34222 -5.99322 -4.01273 3.32337 3.39611 3.44459 3.99362 4.33580 4.46768 4.48309 4.57663 4.89997 5.05611 5.12666 5.21092 5.30238 5.36814 5.37572 5.40508 5.53406 5.59829 5.69659 5.73185 5.75435 5.80258 5.82223 5.87879 5.92926 5.94878 5.99697 6.03332 6.07754 6.12580 6.22876 6.24813 6.29066 6.34473 6.49011 6.54667 6.61833 6.74176 6.81303 7.13687 7.66993 7.75771 7.81599 8.00756 8.44091 9.05795 9.62794 11.12307 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.003972 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.483972 B = 7047.973886 C = 7234.915080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.140 4.140 4 C 0.100 3.900 5 H 0.059 0.941 6 O -0.371 6.371 7 C 0.062 3.938 8 C -0.106 4.106 9 C 0.023 3.977 10 C -0.517 4.517 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.072 4.072 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.093 4.093 23 H 0.092 0.908 24 C -0.120 4.120 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -3.305 17.948 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.197 4.197 4 C 0.041 3.959 5 H 0.077 0.923 6 O -0.290 6.290 7 C -0.014 4.014 8 C -0.143 4.143 9 C -0.014 4.014 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.072 4.072 19 C -0.178 4.178 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.111 4.111 23 H 0.110 0.890 24 C -0.158 4.158 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.408 -3.350 17.838 21.438 hybrid contribution -0.628 0.062 -0.703 0.945 sum 10.780 -3.288 17.135 20.509 Atomic orbital electron populations 1.21753 0.93607 1.03073 1.00555 1.22404 0.96384 0.94433 0.95204 1.21869 1.00515 0.95553 1.01804 1.23480 0.88109 0.93600 0.90665 0.92336 1.87895 1.52012 1.47481 1.41640 1.22800 0.98045 0.93575 0.86939 1.21618 0.95038 1.00114 0.97550 1.19042 0.96445 0.94481 0.91392 1.21265 1.17057 1.06242 1.11015 0.92523 1.25024 0.97119 0.94942 0.97404 1.69976 1.42152 1.15683 1.25801 0.86527 0.82225 0.79415 0.79813 1.19686 1.21018 1.21011 1.22911 0.94532 0.95275 0.94490 1.21307 0.97411 0.99934 0.99194 1.22471 0.98325 0.96831 0.97173 1.22753 1.00640 0.95350 0.97602 1.23548 0.94860 0.95854 0.96819 0.89006 1.23556 0.96450 0.99404 0.96346 0.93484 0.92700 0.90819 0.92834 0.92562 0.92637 0.94019 0.94277 0.92778 0.92735 0.96586 0.96605 0.93075 0.91758 0.92636 0.92425 0.90025 0.92697 0.90599 0.92693 0.91204 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 6.71 37.16 0.25 -1.49 16 2 C -0.08 -1.00 0.74 -151.01 -0.11 -1.11 16 3 C -0.14 -1.53 8.39 37.16 0.31 -1.21 16 4 C 0.10 1.34 2.43 -23.27 -0.06 1.29 16 5 H 0.06 0.80 7.44 -51.93 -0.39 0.42 16 6 O -0.37 -6.06 6.81 -35.23 -0.24 -6.30 16 7 C 0.06 1.14 5.47 37.16 0.20 1.34 16 8 C -0.11 -2.28 5.52 -26.73 -0.15 -2.42 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.07 -0.83 1.35 -149.22 -0.20 -1.04 16 19 C -0.12 -1.30 9.68 37.16 0.36 -0.94 16 20 C -0.11 -1.31 5.78 -24.34 -0.14 -1.45 16 21 C -0.13 -1.36 5.88 -24.34 -0.14 -1.51 16 22 C -0.09 -0.95 4.27 -85.33 -0.36 -1.32 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 C -0.12 -1.19 6.04 -22.44 -0.14 -1.32 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.79 6.98 -51.93 -0.36 0.43 16 27 H 0.07 1.05 5.57 -51.93 -0.29 0.76 16 28 H 0.05 0.53 7.29 -51.92 -0.38 0.15 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.75 7.04 -51.93 -0.37 0.38 16 32 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.15 6.81 -51.93 -0.35 0.80 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.88 5.43 -51.93 -0.28 0.60 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -29.65 344.80 -8.74 -38.38 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.68 Total: -3.28 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -0.73 Total: -24.41 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.24 Total: -6.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.65 -8.74 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.001 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds