Wall clock time and date at job start Mon Mar 30 2020 00:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 110.44808 * 2 1 4 4 C 1.56524 * 111.30366 * 237.01511 * 2 1 3 5 5 H 1.09000 * 110.54458 * 122.72450 * 4 2 1 6 6 O 1.42903 * 110.08630 * 0.42585 * 4 2 1 7 7 C 1.42904 * 113.99645 * 94.74367 * 6 4 2 8 8 C 1.53001 * 109.46859 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47160 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47076 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00018 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99813 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46752 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46855 * 120.00108 * 14 12 10 17 17 H 1.48499 * 109.46996 * 240.00361 * 14 12 10 18 18 C 1.55926 * 104.82220 * 241.69136 * 4 2 1 19 19 C 1.53005 * 116.52683 * 199.33188 * 18 4 2 20 20 C 1.55923 * 104.49806 * 70.00797 * 18 4 2 21 21 C 1.54580 * 104.64370 * 289.72169 * 20 18 4 22 22 C 1.55926 * 104.64170 * 359.97438 * 21 20 18 23 23 H 1.09007 * 115.91651 * 199.96645 * 22 21 20 24 24 C 1.56945 * 100.65499 * 326.22250 * 22 21 20 25 25 H 1.09004 * 109.47349 * 289.59745 * 1 2 3 26 26 H 1.09002 * 109.46923 * 49.59316 * 1 2 3 27 27 H 1.08996 * 109.46953 * 169.59495 * 1 2 3 28 28 H 1.09007 * 109.46707 * 182.38805 * 3 2 1 29 29 H 1.08997 * 109.47548 * 302.38525 * 3 2 1 30 30 H 1.09003 * 109.47137 * 62.39207 * 3 2 1 31 31 H 1.08999 * 109.47321 * 299.99707 * 7 6 4 32 32 H 1.08999 * 109.46861 * 60.00286 * 7 6 4 33 33 H 1.09001 * 109.47204 * 300.00394 * 8 7 6 34 34 H 1.08995 * 109.47099 * 59.99956 * 8 7 6 35 35 H 1.08999 * 109.47083 * 299.99738 * 9 8 7 36 36 H 1.08999 * 109.46798 * 60.00132 * 9 8 7 37 37 H 0.96995 * 120.00137 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47287 * 297.98362 * 19 18 4 39 39 H 1.09002 * 109.47307 * 57.98980 * 19 18 4 40 40 H 1.09000 * 109.46779 * 177.98566 * 19 18 4 41 41 H 1.09003 * 110.40211 * 48.51089 * 20 18 4 42 42 H 1.08998 * 110.40649 * 170.92862 * 20 18 4 43 43 H 1.09000 * 110.40428 * 118.79228 * 21 20 18 44 44 H 1.09005 * 110.40273 * 241.20535 * 21 20 18 45 45 H 1.08998 * 112.02477 * 296.82942 * 24 22 21 46 46 H 1.08998 * 112.03003 * 170.30350 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0645 1.4336 0.0000 4 6 2.0987 -0.7939 -1.2232 5 1 2.7517 -0.1585 -1.8215 6 8 1.0266 -1.2999 -2.0212 7 6 0.6710 -0.4568 -3.1189 8 6 -0.4811 -1.0936 -3.8987 9 6 -0.8614 -0.1913 -5.0743 10 6 -1.9958 -0.8189 -5.8427 11 1 -2.4048 -1.7663 -5.5241 12 6 -2.5121 -0.1830 -6.9518 13 7 -2.0144 0.9710 -7.3394 14 14 -3.9187 -0.9605 -7.9039 15 1 -4.2950 -2.2483 -7.2673 16 1 -5.0876 -0.0447 -7.8959 17 1 -3.4919 -1.2064 -9.3048 18 6 2.9096 -1.9680 -0.5946 19 6 3.9444 -2.6438 -1.4966 20 6 1.8260 -2.9054 0.0207 21 6 1.2723 -2.1204 1.2318 22 6 2.0740 -0.7830 1.2345 23 1 2.0862 -0.2368 2.1778 24 6 3.4648 -1.2773 0.7011 25 1 -0.3634 0.3447 0.9682 26 1 -0.3633 0.6662 -0.7825 27 1 -0.3633 -1.0107 -0.1856 28 1 3.1536 1.4153 -0.0428 29 1 1.6758 1.9664 -0.8678 30 1 1.7452 1.9405 0.9107 31 1 0.3597 0.5176 -2.7426 32 1 1.5315 -0.3344 -3.7766 33 1 -0.1702 -2.0683 -4.2749 34 1 -1.3414 -1.2157 -3.2407 35 1 -1.1722 0.7835 -4.6984 36 1 -0.0009 -0.0697 -5.7321 37 1 -2.3773 1.4182 -8.1198 38 1 3.4418 -3.0923 -2.3536 39 1 4.6632 -1.9017 -1.8443 40 1 4.4654 -3.4188 -0.9345 41 1 1.0335 -3.0963 -0.7029 42 1 2.2760 -3.8424 0.3487 43 1 0.2076 -1.9254 1.1036 44 1 1.4501 -2.6715 2.1553 45 1 3.9314 -1.9928 1.3782 46 1 4.1317 -0.4473 0.4680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:02 Heat of formation + Delta-G solvation = -85.507726 kcal Electronic energy + Delta-G solvation = -21614.145016 eV Core-core repulsion = 18694.992449 eV Total energy + Delta-G solvation = -2919.152567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95554 -38.16350 -35.77207 -34.67053 -33.47415 -31.77367 -29.54693 -28.82462 -27.62816 -26.84228 -25.18008 -24.60278 -22.31630 -21.78587 -19.96306 -19.13980 -18.55718 -17.31890 -16.85830 -16.73740 -16.44100 -15.97279 -15.14626 -14.86806 -14.52695 -14.35700 -14.08751 -13.92624 -13.75885 -13.39073 -13.24887 -13.08869 -13.00494 -12.83114 -12.59795 -12.47185 -12.40199 -12.15010 -12.03666 -11.88274 -11.81154 -11.58598 -11.46842 -11.43191 -11.33255 -11.18006 -10.88938 -10.63513 -10.58474 -10.12651 -8.22804 -6.34015 1.39293 1.39549 1.53455 2.39006 2.78786 3.10577 3.42763 3.57994 3.64170 3.96616 4.10466 4.17499 4.19833 4.26330 4.28993 4.41841 4.51852 4.56367 4.58661 4.64292 4.69795 4.79589 4.88954 4.91153 4.91547 4.93237 4.96934 5.02370 5.05268 5.10627 5.11503 5.16443 5.20682 5.23980 5.33496 5.39676 5.45911 5.47278 5.51897 5.61234 5.64996 5.67897 5.80640 6.19590 6.45554 6.81807 7.35351 8.89600 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.030182 B = 0.003972 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.483972 B = 7047.973886 C = 7234.915080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.138 4.138 4 C 0.087 3.913 5 H 0.053 0.947 6 O -0.378 6.378 7 C 0.078 3.922 8 C -0.092 4.092 9 C 0.029 3.971 10 C -0.544 4.544 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.075 4.075 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.085 4.085 23 H 0.113 0.887 24 C -0.110 4.110 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.006 1.006 36 H -0.006 1.006 37 H 0.265 0.735 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 -3.981 19.566 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.195 4.195 4 C 0.029 3.971 5 H 0.072 0.928 6 O -0.298 6.298 7 C 0.002 3.998 8 C -0.130 4.130 9 C -0.008 4.008 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.201 1.201 18 C -0.075 4.075 19 C -0.178 4.178 20 C -0.150 4.150 21 C -0.163 4.163 22 C -0.103 4.103 23 H 0.131 0.869 24 C -0.147 4.147 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.073 -4.032 19.472 23.263 hybrid contribution -0.811 0.275 -1.193 1.468 sum 11.262 -3.757 18.279 21.796 Atomic orbital electron populations 1.21706 0.94778 1.01544 1.00599 1.22406 0.95411 0.95215 0.95469 1.21855 1.01223 0.94644 1.01806 1.23820 0.87478 0.94928 0.90845 0.92845 1.87881 1.53375 1.47257 1.41243 1.22410 0.96674 0.93293 0.87473 1.21342 0.96331 0.99039 0.96243 1.18908 0.95126 0.94280 0.92485 1.21667 1.18017 1.06628 1.11887 0.92341 1.25977 0.99935 0.95370 0.98383 1.70096 1.43670 1.17067 1.26448 0.85370 0.78538 0.78736 0.78245 1.18726 1.20159 1.20140 1.23006 0.94539 0.94640 0.95319 1.21318 0.97280 1.00526 0.98667 1.22451 0.97665 0.97787 0.97048 1.22741 0.99959 0.95820 0.97759 1.23584 0.94806 0.95185 0.96680 0.86929 1.23536 0.96234 0.99801 0.95140 0.91839 0.94925 0.92378 0.91576 0.94218 0.91176 0.94122 0.94368 0.93033 0.92974 0.98737 0.98754 0.92649 0.93676 0.91966 0.90559 0.93046 0.91451 0.91834 0.90887 0.89438 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 6.71 71.98 0.48 -2.88 16 2 C -0.08 -1.91 0.74 -49.92 -0.04 -1.95 16 3 C -0.14 -2.79 8.39 71.98 0.60 -2.18 16 4 C 0.09 2.30 2.43 32.84 0.08 2.38 16 5 H 0.05 1.45 7.44 -2.39 -0.02 1.44 16 6 O -0.38 -12.65 6.81 -148.98 -1.02 -13.67 16 7 C 0.08 2.94 5.47 71.98 0.39 3.34 16 8 C -0.09 -4.11 5.52 30.59 0.17 -3.94 16 9 C 0.03 1.60 4.97 29.85 0.15 1.75 16 10 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.07 5.46 84.66 0.46 0.53 16 13 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 14 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C -0.07 -1.62 1.35 -48.76 -0.07 -1.69 16 19 C -0.12 -2.42 9.68 71.98 0.70 -1.73 16 20 C -0.11 -2.53 5.78 32.14 0.19 -2.34 16 21 C -0.13 -2.46 5.88 32.14 0.19 -2.27 16 22 C -0.08 -1.50 4.27 -7.36 -0.03 -1.53 16 23 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 24 C -0.11 -1.81 6.04 33.38 0.20 -1.61 16 25 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.03 0.96 6.98 -2.39 -0.02 0.95 16 27 H 0.06 1.68 5.57 -2.39 -0.01 1.67 16 28 H 0.07 1.16 7.29 -2.38 -0.02 1.14 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.53 7.04 -2.39 -0.02 1.52 16 32 H 0.04 1.43 8.11 -2.39 -0.02 1.42 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.47 6.81 -2.39 -0.02 1.45 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.41 5.43 -2.39 -0.01 1.40 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.15 7.32 -2.39 -0.02 1.13 16 Total: -1.00 -64.40 344.80 5.92 -58.48 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.91 Total: 11.27 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 3.71 Total: -45.92 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.28 Total: -57.25 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.02 Total: -13.67 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.40 5.92 -58.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.027 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds