Wall clock time and date at job start Mon Mar 30 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00269 * 2 1 4 4 C 1.50703 * 119.99792 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47152 * 359.97438 * 4 2 1 6 6 C 1.52999 * 109.47466 * 240.00050 * 4 2 1 7 7 C 1.52997 * 109.47317 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 4 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 8 7 13 13 H 1.09001 * 109.47289 * 180.02562 * 12 11 8 14 14 O 1.42895 * 109.47269 * 60.00152 * 12 11 8 15 15 C 1.42900 * 114.00078 * 89.99684 * 14 12 11 16 16 C 1.53004 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47116 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47164 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00110 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47246 * 59.99792 * 22 20 18 24 24 H 1.48502 * 109.47161 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47005 * 299.99610 * 22 20 18 26 26 H 1.08004 * 120.00708 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46959 * 270.00161 * 3 2 1 29 29 H 1.08996 * 109.46770 * 30.00244 * 3 2 1 30 30 H 1.08998 * 109.46982 * 150.00096 * 3 2 1 31 31 H 1.08996 * 109.46929 * 59.99194 * 6 4 2 32 32 H 1.09002 * 109.46716 * 299.99999 * 6 4 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 7 6 4 34 34 H 1.09001 * 109.46832 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47508 * 59.99571 * 10 8 7 36 36 H 1.09000 * 109.47437 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47109 * 299.99380 * 10 8 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 11 8 7 39 39 H 1.09002 * 109.47075 * 300.00932 * 11 8 7 40 40 H 1.09000 * 109.47088 * 300.00088 * 15 14 12 41 41 H 1.09004 * 109.46923 * 60.00486 * 15 14 12 42 42 H 1.09000 * 109.46997 * 299.99940 * 16 15 14 43 43 H 1.09000 * 109.47055 * 59.99816 * 16 15 14 44 44 H 1.09001 * 109.47425 * 300.00061 * 17 16 15 45 45 H 1.09000 * 109.47463 * 59.99877 * 17 16 15 46 46 H 0.96994 * 120.00505 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3551 -2.1336 -0.0005 6 6 2.9430 -1.3869 1.2486 7 6 3.7084 -2.7116 1.2476 8 6 4.5881 -2.7915 -0.0017 9 1 5.2961 -1.9628 -0.0011 10 6 5.3530 -4.1166 -0.0029 11 6 3.7085 -2.7099 -1.2509 12 6 2.9431 -1.3851 -1.2499 13 1 2.3160 -1.3271 -2.1396 14 8 3.8713 -0.2987 -1.2492 15 6 4.2489 0.1441 -2.5543 16 6 5.2401 1.3033 -2.4327 17 6 5.6439 1.7777 -3.8301 18 6 6.6197 2.9198 -3.7104 19 1 6.9220 3.2718 -2.7351 20 6 7.1274 3.5148 -4.8458 21 7 6.7597 3.0859 -6.0335 22 14 8.3375 4.9300 -4.6974 23 1 9.5439 4.4746 -3.9610 24 1 8.7293 5.3906 -6.0537 25 1 7.7008 6.0505 -3.9595 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 2.2451 1.6197 -1.0276 29 1 1.4744 2.0646 0.5139 30 1 3.0159 1.1746 0.5138 31 1 2.3164 -1.3294 2.1386 32 1 3.6514 -0.5584 1.2489 33 1 3.0004 -3.5404 1.2471 34 1 4.3354 -2.7696 2.1374 35 1 4.6447 -4.9451 -0.0036 36 1 5.9801 -4.1733 -0.8926 37 1 5.9797 -4.1751 0.8870 38 1 4.3350 -2.7672 -2.1409 39 1 3.0003 -3.5386 -1.2514 40 1 4.7166 -0.6782 -3.0958 41 1 3.3633 0.4781 -3.0950 42 1 4.7728 2.1257 -1.8911 43 1 6.1256 0.9689 -1.8922 44 1 6.1111 0.9555 -4.3722 45 1 4.7582 2.1122 -4.3703 46 1 7.1170 3.5042 -6.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205671379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:44 Heat of formation + Delta-G solvation = -77.283992 kcal Electronic energy + Delta-G solvation = -21180.315281 eV Core-core repulsion = 18261.519322 eV Total energy + Delta-G solvation = -2918.795960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83743 -36.46138 -35.52812 -33.75714 -31.65210 -31.15387 -29.78752 -27.11455 -26.58621 -26.20369 -23.03765 -22.45927 -21.60161 -20.13968 -19.53320 -18.32253 -16.46601 -15.77682 -15.63262 -15.44042 -14.78783 -14.42802 -14.34158 -13.84987 -13.70396 -13.44339 -12.93150 -12.76429 -12.52660 -12.25846 -11.99805 -11.97991 -11.76570 -11.56447 -11.50253 -11.34778 -11.17168 -10.90644 -10.75455 -10.57038 -10.54088 -10.29173 -10.24367 -9.98727 -9.73773 -9.41089 -9.10408 -9.07674 -8.78395 -8.33839 -5.99277 -4.01474 2.29943 3.34765 3.38743 3.41570 4.05207 4.48171 4.60400 4.69967 4.78792 4.98024 5.11359 5.18963 5.25157 5.36670 5.39052 5.46792 5.50879 5.59839 5.73381 5.75195 5.78293 5.80257 5.83071 5.87186 5.88165 5.95799 6.03038 6.06739 6.12075 6.23370 6.26072 6.32663 6.34941 6.37454 6.54056 6.71258 6.74349 6.79697 7.00089 7.12930 7.65464 7.72296 7.81061 8.00442 8.43545 9.05118 9.62491 11.12246 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.004227 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.429449 B = 6621.880025 C = 7362.017387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.098 4.098 3 C -0.112 4.112 4 C -0.048 4.048 5 H 0.078 0.922 6 C -0.107 4.107 7 C -0.111 4.111 8 C -0.088 4.088 9 H 0.082 0.918 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.098 3.902 13 H 0.055 0.945 14 O -0.371 6.371 15 C 0.062 3.938 16 C -0.105 4.105 17 C 0.024 3.976 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -12.546 13.251 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.098 4.098 3 C -0.168 4.168 4 C -0.067 4.067 5 H 0.097 0.903 6 C -0.145 4.145 7 C -0.148 4.148 8 C -0.106 4.106 9 H 0.100 0.900 10 C -0.204 4.204 11 C -0.172 4.172 12 C 0.039 3.961 13 H 0.073 0.927 14 O -0.291 6.291 15 C -0.014 4.014 16 C -0.142 4.142 17 C -0.013 4.013 18 C -0.557 4.557 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.860 -12.428 13.224 20.653 hybrid contribution 0.487 0.597 -0.433 0.884 sum -9.373 -11.831 12.790 19.785 Atomic orbital electron populations 1.23605 0.95212 1.01375 1.05209 1.21764 0.94830 0.96028 0.97210 1.20835 1.00068 0.93098 1.02823 1.20420 0.95966 0.94974 0.95313 0.90346 1.21483 0.98460 0.98429 0.96086 1.21572 0.98287 0.97268 0.97696 1.21024 0.97267 0.98192 0.94137 0.90002 1.21839 0.99886 0.97101 1.01590 1.22075 0.99205 0.97317 0.98648 1.21920 0.90168 0.87119 0.96845 0.92669 1.87946 1.62403 1.49844 1.28863 1.22772 0.97816 0.97224 0.83561 1.21616 0.96556 0.94776 1.01289 1.19033 0.96366 0.96031 0.89887 1.21182 1.25649 1.16428 0.92467 0.92639 1.25016 0.96748 0.97281 0.95378 1.69952 1.44337 1.41954 0.97366 0.86646 0.81586 0.82661 0.77045 1.20216 1.21299 1.20217 0.89050 0.88695 0.90954 0.93149 0.90874 0.92461 0.90430 0.92584 0.92149 0.93179 0.92742 0.92921 0.91603 0.91756 0.94194 0.94183 0.92717 0.92756 0.96623 0.96615 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.39 13.91 29.02 0.40 -1.99 16 2 C -0.10 -1.19 4.86 -101.06 -0.49 -1.69 16 3 C -0.11 -1.47 8.40 36.00 0.30 -1.17 16 4 C -0.05 -0.55 2.26 -91.77 -0.21 -0.76 16 5 H 0.08 0.81 7.78 -51.93 -0.40 0.40 16 6 C -0.11 -1.17 4.88 -26.73 -0.13 -1.31 16 7 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 8 C -0.09 -0.98 2.58 -90.62 -0.23 -1.22 16 9 H 0.08 1.10 7.68 -51.93 -0.40 0.70 16 10 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 11 C -0.13 -1.56 4.91 -26.73 -0.13 -1.69 16 12 C 0.10 1.26 2.34 -26.73 -0.06 1.20 16 13 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 14 O -0.37 -5.75 6.15 -35.23 -0.22 -5.97 16 15 C 0.06 1.10 5.75 37.16 0.21 1.32 16 16 C -0.10 -2.21 5.52 -26.73 -0.15 -2.36 16 17 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 18 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.09 0.89 7.83 -52.48 -0.41 0.48 16 27 H 0.09 0.99 8.04 -52.48 -0.42 0.57 16 28 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.05 0.60 8.06 -51.93 -0.42 0.18 16 30 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.98 6.34 -51.93 -0.33 0.65 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 41 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -29.20 356.63 -8.90 -38.11 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.95 Total: -2.80 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -0.83 Total: -25.14 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.22 Total: -5.97 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.20 -8.90 -38.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.178 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds