Wall clock time and date at job start Mon Mar 30 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00269 * 2 1 4 4 C 1.50703 * 119.99792 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47152 * 359.97438 * 4 2 1 6 6 C 1.52999 * 109.47466 * 240.00050 * 4 2 1 7 7 C 1.52997 * 109.47317 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 4 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 8 7 13 13 H 1.09001 * 109.47289 * 180.02562 * 12 11 8 14 14 O 1.42895 * 109.47269 * 60.00152 * 12 11 8 15 15 C 1.42900 * 114.00078 * 89.99684 * 14 12 11 16 16 C 1.53004 * 109.47217 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47116 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47164 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00110 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47246 * 59.99792 * 22 20 18 24 24 H 1.48502 * 109.47161 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47005 * 299.99610 * 22 20 18 26 26 H 1.08004 * 120.00708 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46959 * 270.00161 * 3 2 1 29 29 H 1.08996 * 109.46770 * 30.00244 * 3 2 1 30 30 H 1.08998 * 109.46982 * 150.00096 * 3 2 1 31 31 H 1.08996 * 109.46929 * 59.99194 * 6 4 2 32 32 H 1.09002 * 109.46716 * 299.99999 * 6 4 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 7 6 4 34 34 H 1.09001 * 109.46832 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47508 * 59.99571 * 10 8 7 36 36 H 1.09000 * 109.47437 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47109 * 299.99380 * 10 8 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 11 8 7 39 39 H 1.09002 * 109.47075 * 300.00932 * 11 8 7 40 40 H 1.09000 * 109.47088 * 300.00088 * 15 14 12 41 41 H 1.09004 * 109.46923 * 60.00486 * 15 14 12 42 42 H 1.09000 * 109.46997 * 299.99940 * 16 15 14 43 43 H 1.09000 * 109.47055 * 59.99816 * 16 15 14 44 44 H 1.09001 * 109.47425 * 300.00061 * 17 16 15 45 45 H 1.09000 * 109.47463 * 59.99877 * 17 16 15 46 46 H 0.96994 * 120.00505 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 1 1.3551 -2.1336 -0.0005 6 6 2.9430 -1.3869 1.2486 7 6 3.7084 -2.7116 1.2476 8 6 4.5881 -2.7915 -0.0017 9 1 5.2961 -1.9628 -0.0011 10 6 5.3530 -4.1166 -0.0029 11 6 3.7085 -2.7099 -1.2509 12 6 2.9431 -1.3851 -1.2499 13 1 2.3160 -1.3271 -2.1396 14 8 3.8713 -0.2987 -1.2492 15 6 4.2489 0.1441 -2.5543 16 6 5.2401 1.3033 -2.4327 17 6 5.6439 1.7777 -3.8301 18 6 6.6197 2.9198 -3.7104 19 1 6.9220 3.2718 -2.7351 20 6 7.1274 3.5148 -4.8458 21 7 6.7597 3.0859 -6.0335 22 14 8.3375 4.9300 -4.6974 23 1 9.5439 4.4746 -3.9610 24 1 8.7293 5.3906 -6.0537 25 1 7.7008 6.0505 -3.9595 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 2.2451 1.6197 -1.0276 29 1 1.4744 2.0646 0.5139 30 1 3.0159 1.1746 0.5138 31 1 2.3164 -1.3294 2.1386 32 1 3.6514 -0.5584 1.2489 33 1 3.0004 -3.5404 1.2471 34 1 4.3354 -2.7696 2.1374 35 1 4.6447 -4.9451 -0.0036 36 1 5.9801 -4.1733 -0.8926 37 1 5.9797 -4.1751 0.8870 38 1 4.3350 -2.7672 -2.1409 39 1 3.0003 -3.5386 -1.2514 40 1 4.7166 -0.6782 -3.0958 41 1 3.3633 0.4781 -3.0950 42 1 4.7728 2.1257 -1.8911 43 1 6.1256 0.9689 -1.8922 44 1 6.1111 0.9555 -4.3722 45 1 4.7582 2.1122 -4.3703 46 1 7.1170 3.5042 -6.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205671379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:44 Heat of formation + Delta-G solvation = -90.385021 kcal Electronic energy + Delta-G solvation = -21180.883384 eV Core-core repulsion = 18261.519322 eV Total energy + Delta-G solvation = -2919.364063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84549 -37.72726 -36.42897 -35.72907 -33.50292 -32.10559 -30.88348 -28.47311 -28.08144 -27.09681 -24.89071 -23.43689 -22.57133 -21.92859 -20.48390 -19.27418 -18.54066 -17.10950 -16.90982 -16.52199 -16.35495 -15.80397 -15.50896 -14.97129 -14.67357 -14.59551 -14.18410 -14.06611 -13.82115 -13.74406 -13.45957 -13.08892 -12.84681 -12.78530 -12.75199 -12.55182 -12.48718 -12.36567 -12.11570 -11.94627 -11.84228 -11.63219 -11.46439 -11.30103 -11.17216 -11.15187 -10.90958 -10.56259 -10.23671 -9.76466 -8.21393 -6.32564 1.39378 1.39851 1.43062 1.51039 2.39904 2.83900 3.11941 3.70659 3.79699 3.86901 4.09809 4.17552 4.22853 4.25200 4.34598 4.37028 4.51542 4.57027 4.62654 4.63330 4.79426 4.82483 4.85804 4.89469 4.92261 4.95188 4.98484 5.00705 5.04220 5.10264 5.16098 5.19839 5.27211 5.30860 5.40561 5.45890 5.48207 5.50211 5.67073 5.70196 5.81663 5.82911 6.05750 6.21135 6.45903 6.83119 7.36634 8.90536 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.004227 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.429449 B = 6621.880025 C = 7362.017387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.043 4.043 5 H 0.100 0.900 6 C -0.105 4.105 7 C -0.106 4.106 8 C -0.088 4.088 9 H 0.052 0.948 10 C -0.143 4.143 11 C -0.132 4.132 12 C 0.090 3.910 13 H 0.052 0.948 14 O -0.375 6.375 15 C 0.078 3.922 16 C -0.090 4.090 17 C 0.029 3.971 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.267 1.267 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.051 0.949 44 H -0.007 1.007 45 H -0.006 1.006 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 -13.330 14.696 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.120 4.120 3 C -0.164 4.164 4 C -0.061 4.061 5 H 0.118 0.882 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.106 4.106 9 H 0.070 0.930 10 C -0.201 4.201 11 C -0.170 4.170 12 C 0.033 3.967 13 H 0.070 0.930 14 O -0.294 6.294 15 C 0.001 3.999 16 C -0.128 4.128 17 C -0.008 4.008 18 C -0.583 4.583 19 H 0.077 0.923 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.012 0.988 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.583 -13.222 14.687 22.417 hybrid contribution 0.639 0.821 -0.875 1.360 sum -9.944 -12.401 13.811 21.058 Atomic orbital electron populations 1.23808 0.94771 1.02483 1.02838 1.21765 0.95352 0.95672 0.99229 1.20748 0.99995 0.94418 1.01255 1.20431 0.95902 0.95350 0.94414 0.88194 1.21449 0.98163 0.98157 0.96427 1.21546 0.98365 0.97254 0.97127 1.20990 0.97014 0.97927 0.94697 0.92956 1.21804 1.00054 0.96691 1.01509 1.22067 0.99408 0.97219 0.98299 1.22175 0.89981 0.86748 0.97826 0.92997 1.87932 1.63299 1.51148 1.27054 1.22372 0.96829 0.95933 0.84738 1.21327 0.97355 0.96065 0.98057 1.18905 0.94909 0.94860 0.92145 1.21613 1.26408 1.17365 0.92871 0.92301 1.25965 0.98642 1.00144 0.94876 1.70081 1.45581 1.43423 0.98200 0.85497 0.79097 0.79051 0.77397 1.19175 1.20634 1.19177 0.87193 0.88342 0.93269 0.92229 0.92075 0.91219 0.92776 0.90728 0.91510 0.91612 0.93592 0.92317 0.93004 0.89458 0.94261 0.94316 0.92838 0.93040 0.98829 0.98804 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.97 13.91 67.79 0.94 -3.03 16 2 C -0.12 -2.75 4.86 -16.48 -0.08 -2.83 16 3 C -0.11 -2.84 8.40 71.24 0.60 -2.25 16 4 C -0.04 -0.90 2.26 -11.54 -0.03 -0.92 16 5 H 0.10 1.70 7.78 -2.39 -0.02 1.68 16 6 C -0.10 -2.12 4.88 30.59 0.15 -1.97 16 7 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 8 C -0.09 -1.87 2.58 -10.79 -0.03 -1.89 16 9 H 0.05 1.42 7.68 -2.39 -0.02 1.40 16 10 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 11 C -0.13 -2.91 4.91 30.59 0.15 -2.75 16 12 C 0.09 2.26 2.34 30.60 0.07 2.33 16 13 H 0.05 1.33 7.79 -2.39 -0.02 1.31 16 14 O -0.37 -11.80 6.15 -148.98 -0.92 -12.72 16 15 C 0.08 2.84 5.75 71.98 0.41 3.25 16 16 C -0.09 -3.94 5.52 30.59 0.17 -3.77 16 17 C 0.03 1.57 4.97 29.85 0.15 1.72 16 18 C -0.54 -31.78 9.11 25.60 0.23 -31.54 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 22 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H 0.11 1.75 7.83 -2.91 -0.02 1.73 16 27 H 0.10 1.85 8.04 -2.91 -0.02 1.83 16 28 H 0.05 1.50 7.88 -2.39 -0.02 1.48 16 29 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 30 H 0.06 1.73 6.16 -2.39 -0.01 1.71 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.36 6.34 -2.39 -0.02 1.34 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.42 7.87 -2.39 -0.02 1.41 16 41 H 0.04 1.41 8.09 -2.38 -0.02 1.39 16 42 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -63.26 356.63 6.31 -56.95 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.89 Total: 12.75 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 4.03 Total: -46.74 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.92 Total: -12.72 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.26 6.31 -56.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.430 kcal (2) G-P(sol) polarization free energy of solvation -63.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds