Wall clock time and date at job start Mon Mar 30 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00024 * 2 1 4 4 C 1.50706 * 119.99645 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47066 * 0.02562 * 4 2 1 6 6 C 1.53000 * 109.46982 * 240.00087 * 4 2 1 7 7 C 1.53001 * 109.47303 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46616 * 59.99801 * 7 6 4 9 9 H 1.09006 * 109.46761 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47073 * 60.00624 * 8 7 6 11 11 C 1.52996 * 109.47612 * 300.00431 * 8 7 6 12 12 C 1.52997 * 109.46783 * 120.00542 * 4 2 1 13 13 H 1.08994 * 109.47251 * 299.99384 * 12 4 2 14 14 O 1.42898 * 109.47469 * 59.99951 * 12 4 2 15 15 C 1.42900 * 114.00221 * 210.00067 * 14 12 4 16 16 C 1.53000 * 109.47277 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46967 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46720 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00105 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99626 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00128 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47389 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47485 * 300.00439 * 22 20 18 25 25 H 1.48505 * 109.46864 * 60.00221 * 22 20 18 26 26 H 1.08002 * 119.99777 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00333 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46976 * 239.99571 * 3 2 1 29 29 H 1.08997 * 109.47503 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47127 * 120.00064 * 3 2 1 31 31 H 1.08995 * 109.47322 * 300.00589 * 6 4 2 32 32 H 1.09010 * 109.47066 * 60.00318 * 6 4 2 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46871 * 300.00402 * 7 6 4 35 35 H 1.09006 * 109.47028 * 71.20542 * 10 8 7 36 36 H 1.08995 * 109.47575 * 191.20703 * 10 8 7 37 37 H 1.09004 * 109.46852 * 311.21213 * 10 8 7 38 38 H 1.09005 * 109.47011 * 299.99634 * 11 8 7 39 39 H 1.09001 * 109.47133 * 180.02562 * 11 8 7 40 40 H 1.08996 * 109.46935 * 59.99497 * 15 14 12 41 41 H 1.09006 * 109.46859 * 300.00014 * 15 14 12 42 42 H 1.08993 * 109.47137 * 59.99811 * 16 15 14 43 43 H 1.09003 * 109.46605 * 299.99765 * 16 15 14 44 44 H 1.08996 * 109.47074 * 59.99499 * 17 16 15 45 45 H 1.08995 * 109.46602 * 299.99808 * 17 16 15 46 46 H 0.96999 * 119.99902 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3551 -2.1336 0.0005 6 6 2.9430 -1.3857 1.2499 7 6 3.7085 -2.7105 1.2502 8 6 4.5881 -2.7914 0.0010 9 1 5.1331 -3.7355 0.0010 10 6 5.5820 -1.6282 0.0009 11 6 3.7086 -2.7108 -1.2483 12 6 2.9431 -1.3867 -1.2486 13 1 2.3165 -1.3294 -2.1386 14 8 3.8718 -0.3006 -1.2490 15 6 4.2495 0.1407 -2.5546 16 6 5.2412 1.2995 -2.4342 17 6 5.6461 1.7715 -3.8321 18 6 6.6224 2.9134 -3.7135 19 1 6.9236 3.2673 -2.7386 20 6 7.1311 3.5062 -4.8496 21 7 6.7640 3.0755 -6.0368 22 14 8.3407 4.9220 -4.7027 23 1 8.7338 5.3801 -6.0594 24 1 7.7031 6.0437 -3.9676 25 1 9.5466 4.4682 -3.9642 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1336 -0.0005 30 1 2.6902 1.3628 0.8900 31 1 3.6513 -0.5573 1.2496 32 1 2.3163 -1.3276 2.1399 33 1 4.3347 -2.7680 2.1404 34 1 3.0004 -3.5392 1.2503 35 1 6.3327 -1.7917 0.7741 36 1 6.0698 -1.5671 -0.9719 37 1 5.0516 -0.6971 0.2006 38 1 3.0006 -3.5396 -1.2483 39 1 4.3353 -2.7690 -2.1382 40 1 3.3641 0.4743 -3.0956 41 1 4.7170 -0.6824 -3.0952 42 1 6.1265 0.9654 -1.8933 43 1 4.7741 2.1227 -1.8934 44 1 4.7610 2.1054 -4.3734 45 1 6.1133 0.9482 -4.3724 46 1 6.1356 2.3406 -6.1131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205671384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:47 Heat of formation + Delta-G solvation = -70.673622 kcal Electronic energy + Delta-G solvation = -21633.324213 eV Core-core repulsion = 18714.814901 eV Total energy + Delta-G solvation = -2918.509312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18654 -36.49092 -35.50380 -34.06127 -31.57253 -30.71730 -29.86401 -27.10989 -26.59141 -26.02535 -22.95904 -22.64541 -22.00179 -20.53102 -18.78869 -18.37982 -16.84210 -16.35358 -15.69665 -15.42907 -14.90267 -14.37074 -13.80319 -13.71195 -13.62673 -13.47077 -13.29944 -12.72233 -12.45451 -12.34576 -12.25810 -11.92420 -11.89561 -11.58280 -11.40018 -11.23367 -11.04997 -10.78657 -10.72738 -10.45494 -10.35844 -10.32132 -10.13195 -10.02965 -9.85042 -9.75826 -9.10070 -8.69513 -8.54585 -8.31195 -6.34838 -4.03615 2.26756 3.45456 3.47481 3.66119 3.96477 4.55008 4.56935 4.67745 4.76424 5.02937 5.09283 5.22466 5.25977 5.32588 5.39298 5.42491 5.47169 5.63709 5.66595 5.75670 5.76492 5.79007 5.86215 5.88737 5.93868 6.00842 6.03584 6.09981 6.12466 6.15493 6.32135 6.35648 6.36627 6.44429 6.58302 6.63592 6.70494 6.89967 6.95063 6.97276 7.39869 7.53590 7.60614 8.23536 8.48156 8.89989 9.68478 11.05836 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.004373 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.942750 B = 6400.790558 C = 6899.218412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 C -0.123 4.123 4 C -0.048 4.048 5 H 0.078 0.922 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.083 4.083 9 H 0.060 0.940 10 C -0.149 4.149 11 C -0.137 4.137 12 C 0.098 3.902 13 H 0.055 0.945 14 O -0.363 6.363 15 C 0.058 3.942 16 C -0.098 4.098 17 C 0.011 3.989 18 C -0.599 4.599 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.914 5.914 22 Si 1.069 2.931 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.006 0.994 45 H 0.006 0.994 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 -11.688 13.763 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.099 4.099 3 C -0.179 4.179 4 C -0.066 4.066 5 H 0.097 0.903 6 C -0.147 4.147 7 C -0.150 4.150 8 C -0.101 4.101 9 H 0.078 0.922 10 C -0.205 4.205 11 C -0.174 4.174 12 C 0.040 3.960 13 H 0.073 0.927 14 O -0.282 6.282 15 C -0.018 4.018 16 C -0.135 4.135 17 C -0.026 4.026 18 C -0.638 4.638 19 H 0.068 0.932 20 C -0.189 4.189 21 N -0.550 5.550 22 Si 0.897 3.103 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.028 -10.534 13.042 19.041 hybrid contribution -1.134 -1.363 0.564 1.861 sum -10.162 -11.897 13.606 20.735 Atomic orbital electron populations 1.23632 0.95162 1.01369 1.05193 1.21749 0.94849 0.95977 0.97294 1.21021 0.99988 0.92874 1.04016 1.20396 0.95934 0.94990 0.95294 0.90329 1.21550 0.98435 0.98669 0.96047 1.21552 0.98277 0.97314 0.97856 1.20975 0.96158 0.99032 0.93985 0.92195 1.22119 0.97871 0.99722 1.00833 1.22066 0.99265 0.97360 0.98741 1.21910 0.90100 0.87123 0.96894 0.92669 1.88046 1.61948 1.50066 1.28185 1.22778 0.97801 0.97208 0.84031 1.21488 0.96687 0.94782 1.00573 1.19166 0.96128 0.96207 0.91147 1.22023 1.28397 1.18418 0.94932 0.93245 1.25856 0.99305 1.01334 0.92444 1.70788 1.32581 1.27305 1.24364 0.83547 0.75657 0.75328 0.75766 1.20791 1.21434 1.21433 0.88697 0.89072 0.89146 0.93230 0.91768 0.90044 0.92528 0.92103 0.92633 0.94614 0.93021 0.89031 0.91747 0.91626 0.94241 0.94182 0.92467 0.92569 0.97556 0.97554 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.37 13.93 29.02 0.40 -1.96 16 2 C -0.10 -1.18 4.86 -101.06 -0.49 -1.67 16 3 C -0.12 -1.59 8.99 36.00 0.32 -1.27 16 4 C -0.05 -0.53 2.26 -91.77 -0.21 -0.74 16 5 H 0.08 0.80 7.78 -51.93 -0.40 0.39 16 6 C -0.11 -1.18 4.65 -26.73 -0.12 -1.30 16 7 C -0.11 -1.12 5.45 -26.73 -0.15 -1.27 16 8 C -0.08 -0.93 3.19 -90.62 -0.29 -1.22 16 9 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 10 C -0.15 -1.95 7.81 37.16 0.29 -1.66 16 11 C -0.14 -1.56 5.26 -26.76 -0.14 -1.70 16 12 C 0.10 1.22 2.34 -26.76 -0.06 1.16 16 13 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 14 O -0.36 -5.29 3.03 -35.23 -0.11 -5.40 16 15 C 0.06 0.99 5.20 37.16 0.19 1.18 16 16 C -0.10 -2.03 5.52 -26.73 -0.15 -2.17 16 17 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 18 C -0.60 -17.28 9.11 -34.44 -0.31 -17.59 16 19 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 21 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 22 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.09 0.99 7.83 -52.49 -0.41 0.58 16 27 H 0.09 0.88 7.83 -52.48 -0.41 0.47 16 28 H 0.09 1.35 5.62 -51.93 -0.29 1.06 16 29 H 0.05 0.60 7.78 -51.93 -0.40 0.20 16 30 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 31 H 0.08 1.00 5.08 -51.93 -0.26 0.73 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.09 1.30 3.79 -51.93 -0.20 1.11 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 40 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 45 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 46 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -29.65 345.13 -8.70 -38.35 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.54 Total: -1.33 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -0.93 Total: -29.76 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 0.76 Total: -27.53 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.11 Total: -5.40 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.65 -8.70 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.320 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds