Wall clock time and date at job start Mon Mar 30 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00024 * 2 1 4 4 C 1.50706 * 119.99645 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47066 * 0.02562 * 4 2 1 6 6 C 1.53000 * 109.46982 * 240.00087 * 4 2 1 7 7 C 1.53001 * 109.47303 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46616 * 59.99801 * 7 6 4 9 9 H 1.09006 * 109.46761 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47073 * 60.00624 * 8 7 6 11 11 C 1.52996 * 109.47612 * 300.00431 * 8 7 6 12 12 C 1.52997 * 109.46783 * 120.00542 * 4 2 1 13 13 H 1.08994 * 109.47251 * 299.99384 * 12 4 2 14 14 O 1.42898 * 109.47469 * 59.99951 * 12 4 2 15 15 C 1.42900 * 114.00221 * 210.00067 * 14 12 4 16 16 C 1.53000 * 109.47277 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46967 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46720 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00105 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99626 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00128 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47389 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47485 * 300.00439 * 22 20 18 25 25 H 1.48505 * 109.46864 * 60.00221 * 22 20 18 26 26 H 1.08002 * 119.99777 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00333 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46976 * 239.99571 * 3 2 1 29 29 H 1.08997 * 109.47503 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47127 * 120.00064 * 3 2 1 31 31 H 1.08995 * 109.47322 * 300.00589 * 6 4 2 32 32 H 1.09010 * 109.47066 * 60.00318 * 6 4 2 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46871 * 300.00402 * 7 6 4 35 35 H 1.09006 * 109.47028 * 71.20542 * 10 8 7 36 36 H 1.08995 * 109.47575 * 191.20703 * 10 8 7 37 37 H 1.09004 * 109.46852 * 311.21213 * 10 8 7 38 38 H 1.09005 * 109.47011 * 299.99634 * 11 8 7 39 39 H 1.09001 * 109.47133 * 180.02562 * 11 8 7 40 40 H 1.08996 * 109.46935 * 59.99497 * 15 14 12 41 41 H 1.09006 * 109.46859 * 300.00014 * 15 14 12 42 42 H 1.08993 * 109.47137 * 59.99811 * 16 15 14 43 43 H 1.09003 * 109.46605 * 299.99765 * 16 15 14 44 44 H 1.08996 * 109.47074 * 59.99499 * 17 16 15 45 45 H 1.08995 * 109.46602 * 299.99808 * 17 16 15 46 46 H 0.96999 * 119.99902 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3551 -2.1336 0.0005 6 6 2.9430 -1.3857 1.2499 7 6 3.7085 -2.7105 1.2502 8 6 4.5881 -2.7914 0.0010 9 1 5.1331 -3.7355 0.0010 10 6 5.5820 -1.6282 0.0009 11 6 3.7086 -2.7108 -1.2483 12 6 2.9431 -1.3867 -1.2486 13 1 2.3165 -1.3294 -2.1386 14 8 3.8718 -0.3006 -1.2490 15 6 4.2495 0.1407 -2.5546 16 6 5.2412 1.2995 -2.4342 17 6 5.6461 1.7715 -3.8321 18 6 6.6224 2.9134 -3.7135 19 1 6.9236 3.2673 -2.7386 20 6 7.1311 3.5062 -4.8496 21 7 6.7640 3.0755 -6.0368 22 14 8.3407 4.9220 -4.7027 23 1 8.7338 5.3801 -6.0594 24 1 7.7031 6.0437 -3.9676 25 1 9.5466 4.4682 -3.9642 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3552 2.1336 -0.0005 30 1 2.6902 1.3628 0.8900 31 1 3.6513 -0.5573 1.2496 32 1 2.3163 -1.3276 2.1399 33 1 4.3347 -2.7680 2.1404 34 1 3.0004 -3.5392 1.2503 35 1 6.3327 -1.7917 0.7741 36 1 6.0698 -1.5671 -0.9719 37 1 5.0516 -0.6971 0.2006 38 1 3.0006 -3.5396 -1.2483 39 1 4.3353 -2.7690 -2.1382 40 1 3.3641 0.4743 -3.0956 41 1 4.7170 -0.6824 -3.0952 42 1 6.1265 0.9654 -1.8933 43 1 4.7741 2.1227 -1.8934 44 1 4.7610 2.1054 -4.3734 45 1 6.1133 0.9482 -4.3724 46 1 6.1356 2.3406 -6.1131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205671384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:46 Heat of formation + Delta-G solvation = -83.955803 kcal Electronic energy + Delta-G solvation = -21633.900172 eV Core-core repulsion = 18714.814901 eV Total energy + Delta-G solvation = -2919.085271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17528 -37.75089 -36.41277 -36.03974 -33.41708 -31.64198 -30.94703 -28.19529 -28.02938 -27.33685 -24.89034 -23.57660 -22.98079 -22.32442 -19.75236 -19.33434 -18.89761 -17.54352 -16.79894 -16.66964 -15.91373 -15.64562 -15.52487 -15.22483 -14.77061 -14.65535 -14.42920 -14.14379 -13.76359 -13.58094 -13.43459 -13.23577 -12.98657 -12.88916 -12.62306 -12.52681 -12.27390 -12.10964 -12.01474 -11.96552 -11.81522 -11.77480 -11.50353 -11.24532 -11.20789 -10.93427 -10.70603 -10.55393 -10.13009 -9.69910 -8.70508 -6.40768 1.38029 1.52293 1.60846 1.80411 2.55163 2.78151 3.14675 3.66338 3.77561 3.86916 4.09054 4.14255 4.19604 4.20164 4.33390 4.37648 4.45480 4.50942 4.53109 4.59565 4.71881 4.75733 4.79260 4.87384 4.90262 4.94186 4.95915 5.00945 5.02802 5.07548 5.09651 5.22190 5.26433 5.30168 5.37179 5.43689 5.48076 5.49754 5.54500 5.78706 5.85320 5.97497 6.04044 6.16792 6.38752 6.57230 7.40965 8.70552 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.004373 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.942750 B = 6400.790558 C = 6899.218412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.120 4.120 4 C -0.042 4.042 5 H 0.099 0.901 6 C -0.108 4.108 7 C -0.107 4.107 8 C -0.082 4.082 9 H 0.070 0.930 10 C -0.146 4.146 11 C -0.135 4.135 12 C 0.091 3.909 13 H 0.052 0.948 14 O -0.361 6.361 15 C 0.075 3.925 16 C -0.083 4.083 17 C 0.012 3.988 18 C -0.619 4.619 19 H 0.050 0.950 20 C -0.038 4.038 21 N -0.937 5.937 22 Si 1.118 2.882 23 H -0.282 1.282 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.053 0.947 44 H -0.010 1.010 45 H -0.011 1.011 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -12.531 15.401 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.118 4.118 3 C -0.177 4.177 4 C -0.060 4.060 5 H 0.117 0.883 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.100 4.100 9 H 0.088 0.912 10 C -0.203 4.203 11 C -0.172 4.172 12 C 0.033 3.967 13 H 0.070 0.930 14 O -0.281 6.281 15 C -0.001 4.001 16 C -0.120 4.120 17 C -0.025 4.025 18 C -0.656 4.656 19 H 0.068 0.932 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.938 3.062 23 H -0.208 1.208 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.008 0.992 45 H 0.008 0.992 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.825 -11.400 14.703 21.040 hybrid contribution -0.957 -1.125 0.085 1.480 sum -10.783 -12.525 14.788 22.177 Atomic orbital electron populations 1.23825 0.94802 1.02393 1.03101 1.21754 0.95312 0.95680 0.99070 1.20947 0.99862 0.94103 1.02749 1.20401 0.95869 0.95260 0.94469 0.88301 1.21518 0.98186 0.98460 0.96317 1.21525 0.98346 0.97394 0.97194 1.20978 0.95956 0.98392 0.94675 0.91194 1.22069 0.98369 1.00264 0.99598 1.22064 0.99475 0.97405 0.98299 1.22145 0.89947 0.86773 0.97796 0.92994 1.88059 1.62725 1.51182 1.26130 1.22342 0.96700 0.95755 0.85347 1.21202 0.97484 0.96126 0.97235 1.19088 0.94799 0.94998 0.93607 1.22463 1.28875 1.19219 0.95092 0.93162 1.27460 1.00622 1.03567 0.91905 1.70923 1.33421 1.27725 1.25413 0.82935 0.74218 0.72798 0.76207 1.20752 1.19370 1.19390 0.88460 0.87290 0.91521 0.92917 0.92023 0.92036 0.91426 0.91486 0.90753 0.94087 0.95302 0.90268 0.89407 0.93001 0.94384 0.94327 0.92934 0.92847 0.99182 0.99231 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.96 13.93 67.78 0.94 -3.02 16 2 C -0.12 -2.62 4.86 -16.48 -0.08 -2.70 16 3 C -0.12 -3.09 8.99 71.24 0.64 -2.45 16 4 C -0.04 -0.84 2.26 -11.54 -0.03 -0.86 16 5 H 0.10 1.63 7.78 -2.39 -0.02 1.61 16 6 C -0.11 -2.08 4.65 30.59 0.14 -1.94 16 7 C -0.11 -1.83 5.45 30.60 0.17 -1.67 16 8 C -0.08 -1.68 3.19 -10.79 -0.03 -1.71 16 9 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 10 C -0.15 -3.79 7.81 71.98 0.56 -3.23 16 11 C -0.13 -2.84 5.26 30.58 0.16 -2.68 16 12 C 0.09 2.16 2.34 30.58 0.07 2.23 16 13 H 0.05 1.27 7.79 -2.39 -0.02 1.25 16 14 O -0.36 -10.58 3.03 -148.98 -0.45 -11.03 16 15 C 0.08 2.62 5.20 71.98 0.37 3.00 16 16 C -0.08 -3.54 5.52 30.60 0.17 -3.37 16 17 C 0.01 0.65 4.28 29.85 0.13 0.78 16 18 C -0.62 -36.28 9.11 25.60 0.23 -36.05 16 19 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 20 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 21 N -0.94 -59.16 13.65 21.45 0.29 -58.86 16 22 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H 0.10 1.82 7.83 -2.91 -0.02 1.80 16 27 H 0.11 1.72 7.83 -2.91 -0.02 1.70 16 28 H 0.07 2.03 5.62 -2.39 -0.01 2.01 16 29 H 0.05 1.27 7.78 -2.39 -0.02 1.25 16 30 H 0.06 1.56 7.38 -2.39 -0.02 1.54 16 31 H 0.06 1.45 5.08 -2.39 -0.01 1.44 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.08 2.26 3.79 -2.38 -0.01 2.25 16 38 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 1.23 7.87 -2.39 -0.02 1.22 16 40 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.04 1.35 7.87 -2.38 -0.02 1.33 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 44 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 45 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 46 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 Total: -1.00 -64.29 345.13 6.81 -57.48 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.01 Total: 14.82 kcal Atomic # 6 Polarization: -59.39 SS G_CDS: 3.91 Total: -55.48 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.29 Total: -58.86 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.45 Total: -11.03 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -64.29 6.81 -57.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.480 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds